Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 0.0e+00 1239.9 626 100.0
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 1.6e-293 1012.3 641 83.5
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 1.0e-271 939.9 633 78.4
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 6.2e-269 930.6 630 77.8
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 4.0e-268 927.9 625 77.4
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 4.4e-267 924.5 586 80.7
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 1.7e-266 922.5 630 76.7
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 2.2e-266 922.2 630 76.7
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 6.4e-266 920.6 624 76.9
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.1e-265 919.8 601 79.2
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 1.4e-265 919.5 630 76.5
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 2.4e-265 918.7 622 77.0
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 2.4e-265 918.7 599 79.3
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 2.4e-265 918.7 626 77.2
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 5.4e-265 917.5 629 77.4
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 7.1e-265 917.1 635 76.7
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 1.6e-264 916.0 623 77.0
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 1.0e-263 913.3 640 76.2
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 2.3e-263 912.1 629 76.3
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 6.6e-263 910.6 623 76.4
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 6.6e-263 910.6 625 76.2
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 6.6e-263 910.6 630 76.2
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 8.6e-263 910.2 583 80.4
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 1.1e-262 909.8 627 75.9
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 3.3e-262 908.3 653 74.4
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 7.3e-262 907.1 628 76.1
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 2.8e-261 905.2 585 79.7
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 3.6e-261 904.8 630 76.0
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 4.7e-261 904.4 610 77.5
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 8.1e-261 903.7 626 76.0
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 1.8e-260 902.5 580 80.2
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 2.4e-260 902.1 587 79.4
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 3.1e-260 901.7 630 75.9
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 5.2e-260 901.0 607 76.4
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 5.2e-260 901.0 630 75.6
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 6.8e-260 900.6 633 75.2
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 1.5e-259 899.4 609 76.8
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 2.6e-259 898.7 630 75.6
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 2.6e-259 898.7 628 74.4
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 1.3e-258 896.3 606 76.7
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 1.7e-258 896.0 607 76.3
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.4e-257 892.9 613 76.3
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.4e-257 892.1 634 74.3
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 5.4e-257 891.0 629 74.6
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 7.1e-257 890.6 612 76.3
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 7.1e-257 890.6 627 74.0
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 1.2e-256 889.8 600 76.8
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.1e-256 889.0 613 75.9
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 2.1e-256 889.0 593 77.6
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 6.0e-256 887.5 630 74.9
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 6.0e-256 887.5 628 74.0
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 1.0e-255 886.7 609 75.4
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 1.7e-255 885.9 628 74.2
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.1e-254 883.2 648 72.5
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 1.9e-254 882.5 628 73.7
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.9e-254 882.5 636 73.9
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 2.5e-254 882.1 626 74.1
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 3.3e-254 881.7 628 74.5
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 7.3e-254 880.6 626 74.3
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 9.6e-254 880.2 632 75.0
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 4.8e-253 877.9 607 76.1
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 1.1e-252 876.7 630 73.0
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 1.1e-252 876.7 607 74.3
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.8e-252 875.9 596 76.0
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 4.0e-252 874.8 627 72.4
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 6.9e-252 874.0 607 73.8
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 2.6e-251 872.1 607 74.5
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 5.8e-251 870.9 613 73.1
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 7.6e-251 870.5 624 73.7
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 9.9e-251 870.2 607 74.0
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 2.2e-250 869.0 612 72.9
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 3.2e-249 865.1 609 73.7
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 1.2e-248 863.2 623 72.2
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 1.6e-248 862.8 626 72.5
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 1.6e-248 862.8 607 75.5
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 3.9e-247 858.2 624 71.8
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 3.9e-247 858.2 618 73.0
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 1.5e-246 856.3 661 70.2
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 2.5e-246 855.5 625 71.8
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 3.3e-246 855.1 623 71.6
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 5.6e-246 854.4 630 71.4
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 5.6e-246 854.4 619 73.0
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.4e-244 849.0 642 70.7
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 6.9e-244 847.4 630 72.1
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 2.0e-243 845.9 625 71.7
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 5.8e-243 844.3 628 70.5
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 1.9e-241 839.3 634 70.7
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.1e-240 835.9 626 70.9
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 4.6e-240 834.7 640 70.5
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.9e-238 829.3 626 70.9
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 4.8e-237 824.7 577 72.3
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 6.2e-237 824.3 626 70.4
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 2.9e-234 815.5 571 72.5
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.9e-233 812.8 591 71.1
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.7e-232 808.9 637 69.1
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 1.5e-230 803.1 580 70.5
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 2.0e-227 792.7 513 78.9
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 2.9e-226 788.9 607 69.5
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 2.9e-226 788.9 610 70.2
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 1.1e-225 786.9 607 69.5
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 1.0e-223 780.4 556 74.5
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 1.9e-222 776.2 586 67.2
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 4.2e-217 758.4 473 82.0
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 8.8e-215 750.7 497 77.7
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 5.7e-214 748.0 583 66.7
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 9.7e-214 747.3 598 67.6
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 3.7e-213 745.3 573 66.3
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 1.9e-209 733.0 565 66.0
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 7.2e-209 731.1 577 65.0
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 1.1e-198 697.2 586 65.4
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.6e-192 676.8 624 61.4
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 6.1e-184 648.3 555 65.4
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.3e-178 630.6 431 77.0
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 6.8e-175 618.2 593 55.5
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 6.4e-149 531.9 599 53.9
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 3.2e-148 529.6 548 54.0
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 7.1e-148 528.5 446 66.4
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 5.6e-145 518.8 377 74.0
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.7e-141 507.3 579 49.4
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 4.9e-141 505.8 392 69.4
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 3.7e-120 436.4 605 44.1
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 2.3e-114 417.2 290 76.9
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 8.5e-93 345.5 258 68.6
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 1.1e-92 345.1 256 68.4
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 1.0e-74 285.4 414 46.1
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 5.5e-68 263.1 208 64.9
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 3.7e-56 223.8 199 58.8
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 1.5e-44 185.3 143 69.2
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 3.3e-44 184.1 111 82.9
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.4e-39 168.7 133 63.2
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 1.9e-39 168.3 186 53.2
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 5.1e-37 160.2 129 66.7
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 3.6e-27 127.5 347 30.5
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.8e-26 125.2 82 79.3
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 5.6e-20 103.6 57 84.2
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 1.2e-17 95.9 58 81.0
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 1.6e-14 85.5 126 43.7
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 2.7e-14 84.7 119 41.2
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 7.9e-14 83.2 107 47.7
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 1.0e-13 82.8 93 41.9
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 6.7e-13 80.1 41 85.4
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 2.1e-11 75.1 42 81.0
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 2.6e-09 68.2 52 73.1
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 9.9e-09 66.2 89 51.7
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 2.4e-07 61.6 112 38.4
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 3.2e-07 61.2 36 75.0
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 5.5e-07 60.5 37 81.1


User provided reference genes

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