Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 1.2e-289 999.2 545 100.0
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 3.5e-111 406.4 550 50.4
Migut.B01162 Erythranthe guttata HOM05D007286 ORTHO05D008955 6.7e-94 349.0 559 47.2
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 4.5e-90 336.3 602 40.7
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.0e-89 335.1 598 41.6
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 7.2e-88 328.9 598 41.0
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.0e-86 325.1 623 40.3
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 1.0e-86 325.1 602 39.5
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 1.5e-85 321.2 603 40.5
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 5.7e-85 319.3 591 41.1
SGA_v2.0_scaffold143G35713 Striga asiatica HOM05D007286 ORTHO05D008955 1.3e-84 318.2 557 43.3
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.7e-84 317.8 610 41.6
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 3.4e-82 310.1 618 39.5
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 6.5e-81 305.8 605 40.8
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 6.5e-81 305.8 605 40.8
SalBow8G2801 Salvia bowleyana HOM05D007286 ORTHO05D008955 3.2e-80 303.5 431 48.7
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 1.7e-73 281.2 603 40.3
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 1.4e-72 278.1 392 46.2
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 3.2e-72 276.9 618 36.9
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 2.7e-71 273.9 619 38.3
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 5.2e-70 269.6 623 36.9
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 1.5e-69 268.1 602 38.4
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 3.1e-67 260.4 609 37.8
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 7.0e-67 259.2 621 37.4
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 1.3e-65 255.0 628 36.0
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 7.2e-64 249.2 618 36.6
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 9.4e-64 248.8 625 34.6
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 2.1e-63 247.7 593 35.6
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 3.6e-63 246.9 635 35.0
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 1.4e-62 245.0 592 37.5
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 6.7e-62 242.7 609 36.6
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 8.8e-62 242.3 618 35.0
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.5e-61 241.5 621 36.1
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 4.4e-61 240.0 629 35.1
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 5.7e-61 239.6 621 35.9
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 8.3e-60 235.7 620 36.1
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 5.3e-59 233.0 614 34.5
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 5.3e-59 233.0 637 34.4
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 1.6e-58 231.5 629 35.6
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 2.0e-58 231.1 587 35.8
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 2.0e-58 231.1 598 35.3
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 4.5e-58 229.9 592 36.3
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 2.9e-57 227.3 593 35.1
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 3.8e-57 226.9 567 35.4
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 8.5e-57 225.7 567 35.4
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 1.1e-56 225.3 578 35.6
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 1.4e-54 218.4 605 35.5
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 4.0e-54 216.9 578 34.3
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 1.5e-53 214.9 576 35.6
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 2.0e-53 214.5 569 33.9
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 1.3e-52 211.8 602 35.5
VMungo1127G2168 Vigna mungo HOM05D007286 ORTHO05D008955 3.7e-52 210.3 298 45.0
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 1.6e-50 204.9 547 34.2
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 2.9e-49 200.7 616 32.6
Cc07_g21350 Coffea canephora HOM05D007286 ORTHO05D008955 5.0e-49 199.9 279 47.3
EL10Ac4g08793 Beta vulgaris HOM05D007286 ORTHO05D008955 6.6e-49 199.5 592 34.0
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 1.5e-48 198.4 561 33.7
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 4.2e-48 196.8 531 33.5
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 5.5e-48 196.4 602 33.1
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 9.5e-48 195.7 601 33.3
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 2.1e-47 194.5 602 33.1
Sed0010854 Sechium edule HOM05D007286 ORTHO05D008955 6.1e-47 193.0 618 35.1
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 6.1e-47 193.0 307 40.7
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 2.3e-46 191.0 601 32.9
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 2.3e-46 191.0 591 33.5
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 8.9e-46 189.1 564 33.2
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 3.7e-44 183.7 602 32.1
MELO3C012308.2 Cucumis melo HOM05D007286 ORTHO05D008955 2.4e-43 181.0 630 33.3
Hund06829 Selenicereus undatus HOM05D007286 ORTHO05D008955 3.2e-43 180.6 582 32.1
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 4.1e-43 180.3 583 34.5
vmacro23447 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 1.6e-42 178.3 376 38.6
vmacro13789 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 4.5e-42 176.8 376 38.3
ClCG05G022150 Citrullus lanatus HOM05D007286 ORTHO05D008955 2.3e-41 174.5 626 33.5
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 8.6e-41 172.6 505 32.7
AUR62034104 Chenopodium quinoa HOM05D007286 ORTHO05D008955 1.2e-39 168.7 625 32.6
arahy.Tifrunner.gnm1.ann1.VD1ICN Arachis hypogaea HOM05D007286 ORTHO05D008955 1.6e-39 168.3 639 30.7
AUR62041274 Chenopodium quinoa HOM05D007286 ORTHO05D008955 8.0e-39 166.0 628 31.8
Cpa.g.sc54.34 Carica papaya HOM05D007286 ORTHO05D008955 1.8e-38 164.9 170 52.9
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 1.2e-37 162.2 419 34.8
CsaV3_5G034980 Cucumis sativus L. HOM05D007286 ORTHO05D008955 3.4e-37 160.6 607 32.0
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 1.7e-36 158.3 631 31.5
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.2e-34 152.1 575 31.3
CDE04G1177 Ceratophyllum demersum HOM05D007286 ORTHO05D008955 5.0e-33 146.7 538 32.0
DCAR_025313 Daucus carota HOM05D007286 ORTHO05D008955 2.3e-30 137.9 413 34.4
HPP92_018000 Vanilla planifolia HOM05D007286 ORTHO05D008955 4.4e-29 133.7 593 30.4
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 5.8e-29 133.3 172 48.8
Zm00001eb093550 Zea mays HOM05D007286 ORTHO05D008955 1.9e-27 128.3 268 38.1
Os11g0129800 Oryza sativa ssp. japonica HOM05D007286 ORTHO05D008955 6.0e-26 123.2 267 35.6
Hma1.2p1_0892F.1_g233190 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 7.3e-24 116.3 97 59.8
unitig_22.g5338 Utricularia gibba HOM05D007286 ORTHO05D008955 7.3e-24 116.3 254 38.2
vmacro13790 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 2.8e-23 114.4 226 38.1
vmacro23446 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 2.8e-23 114.4 226 38.1
Cc07_g21330 Coffea canephora HOM05D007286 ORTHO05D008955 6.2e-23 113.2 257 39.3
Glyma.15G221551 Glycine max HOM05D007286 ORTHO05D008955 8.3e-20 102.8 199 39.2
SalBow8G3990 Salvia bowleyana HOM05D007286 ORTHO05D008955 6.0e-18 96.7 111 46.8
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 1.2e-15 89.0 155 41.3
PSO384G4662 Papaver somniferum HOM05D007286 ORTHO05D008955 8.1e-15 86.3 212 34.9
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 3.1e-14 84.3 281 28.8
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 5.2e-14 83.6 283 29.7
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 5.2e-14 83.6 280 28.2
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 5.2e-14 83.6 317 27.4
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 1.2e-13 82.4 278 29.9
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 1.3e-12 79.0 606 26.2
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 1.3e-12 79.0 631 25.2
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 2.2e-12 78.2 283 30.0
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 2.9e-12 77.8 198 33.8
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 2.9e-12 77.8 306 29.7
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 2.9e-12 77.8 586 27.0
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 8.4e-12 76.3 271 28.4
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 1.4e-11 75.5 314 27.4
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 1.4e-11 75.5 321 24.9
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 2.4e-11 74.7 414 25.4
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 2.4e-11 74.7 608 26.2
Aqoxy386s002 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 5.4e-11 73.6 209 32.5
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 5.4e-11 73.6 292 27.1
HPP92_026687 Vanilla planifolia HOM05D007286 ORTHO05D008955 5.4e-11 73.6 206 33.0
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 7.1e-11 73.2 396 24.7
AUR62025869 Chenopodium quinoa HOM05D005518 ORTHO05D001269 1.6e-10 72.0 115 38.3
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 1.6e-10 72.0 593 26.1
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 2.1e-10 71.6 272 28.3
Lj1g0006481 Lotus japonicus HOM05D005518 ORTHO05D001269 2.1e-10 71.6 584 24.1
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 2.7e-10 71.2 113 38.9
HPP92_026688 Vanilla planifolia HOM05D007286 ORTHO05D008955 2.7e-10 71.2 380 29.5
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 3.5e-10 70.9 429 25.2
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 7.8e-10 69.7 429 25.2
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 1.0e-09 69.3 595 26.4
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 1.0e-09 69.3 429 25.2
Peaxi162Scf00089g00324 Petunia axillaris HOM05D005518 ORTHO05D001269 1.0e-09 69.3 589 28.9
Psat5g139920 Pisum sativum HOM05D005518 ORTHO05D001269 1.0e-09 69.3 566 29.0
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 1.0e-09 69.3 427 26.2
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 1.3e-09 68.9 306 26.1
CSS0040133 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 1.7e-09 68.6 258 29.1
Lalb_Chr08g0237001 Lupinus albus HOM05D005518 ORTHO05D001269 2.3e-09 68.2 603 26.2
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 3.0e-09 67.8 598 25.1
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 3.0e-09 67.8 603 25.7
CiPaw.12G036400 Carya illinoinensis HOM05D005518 ORTHO05D001269 3.0e-09 67.8 603 25.9
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 3.0e-09 67.8 585 23.9
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 3.0e-09 67.8 611 25.2
PGSC0003DMG400015252 Solanum tuberosum HOM05D005518 ORTHO05D001269 3.9e-09 67.4 265 29.1
CARHR258130 Cardamine hirsuta HOM05D005518 ORTHO05D001269 5.1e-09 67.0 235 28.5
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 5.1e-09 67.0 439 29.2
CDE06G2288 Ceratophyllum demersum HOM05D005518 ORTHO05D005913 6.6e-09 66.6 94 46.8
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 6.6e-09 66.6 149 34.9
AT5G50350 Arabidopsis thaliana HOM05D005518 ORTHO05D001269 1.1e-08 65.9 107 43.9
Sabra15G0113400 Salix brachista HOM05D005518 ORTHO05D001269 1.1e-08 65.9 264 28.4
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 1.1e-08 65.9 388 26.3
AUR62029840 Chenopodium quinoa HOM05D005518 ORTHO05D001269 1.5e-08 65.5 296 26.7
Lj5C99T12 Lonicera japonica HOM05D005518 ORTHO05D001269 1.5e-08 65.5 151 35.1
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 1.9e-08 65.1 601 25.0
Sopen03g030200 Solanum pennellii HOM05D005518 ORTHO05D001269 1.9e-08 65.1 262 28.6
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 2.5e-08 64.7 225 29.3
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 2.5e-08 64.7 625 24.5
Sp6g12480 Schrenkiella parvula HOM05D005518 ORTHO05D001269 2.5e-08 64.7 164 33.5
VMungo1309G2768 Vigna mungo HOM05D005518 ORTHO05D001269 2.5e-08 64.7 267 27.3
Lalb_Chr11g0069691 Lupinus albus HOM05D005518 ORTHO05D001269 3.3e-08 64.3 592 25.8
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 4.3e-08 63.9 607 25.7
CAN.G352.49 Capsicum annuum HOM05D005518 ORTHO05D001269 4.3e-08 63.9 265 29.1
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 9.6e-08 62.8 613 25.1
Aa31LG3G5820 Aethionema arabicum HOM05D005518 ORTHO05D001269 1.3e-07 62.4 101 41.6
Haze_07258 Corylus avellana HOM05D005518 ORTHO05D001269 1.6e-07 62.0 94 37.2
Potri.015G091500 Populus trichocarpa HOM05D005518 ORTHO05D001269 1.6e-07 62.0 596 26.7
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 2.1e-07 61.6 618 24.1
Cpa.g.sc54.32 Carica papaya HOM05D007286 ORTHO05D008955 2.8e-07 61.2 87 40.2
Oeu023474.2 Olea europaea HOM05D005518 ORTHO05D001269 2.8e-07 61.2 573 26.0
Solyc03g111030.3 Solanum lycopersicum HOM05D005518 ORTHO05D001269 2.8e-07 61.2 266 28.6
arahy.Tifrunner.gnm1.ann1.QFFJ7D Arachis hypogaea HOM05D005518 ORTHO05D001269 6.2e-07 60.1 592 26.9
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 6.2e-07 60.1 583 23.5
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 8.1e-07 59.7 481 23.7
THA.LOC104825006 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 8.1e-07 59.7 437 26.5
Carub.0008s1043 Capsella rubella HOM05D005518 ORTHO05D001269 1.1e-06 59.3 221 27.6
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 1.4e-06 58.9 586 24.4
arahy.Tifrunner.gnm1.ann1.QJ9WGP Arachis hypogaea HOM05D001134 ORTHO05D001035 1.8e-06 58.5 111 36.0
ECA247G0960 Erigeron canadensis HOM05D005518 ORTHO05D001269 1.8e-06 58.5 269 27.1
Potri.012G094200 Populus trichocarpa HOM05D005518 ORTHO05D001269 1.8e-06 58.5 588 26.0
arahy.Tifrunner.gnm1.ann1.P5I184 Arachis hypogaea HOM05D001134 ORTHO05D001269 2.4e-06 58.2 483 26.5
Migut.I00490 Erythranthe guttata HOM05D005518 ORTHO05D001269 3.1e-06 57.8 127 35.4
Gohir.D11G039100 Gossypium hirsutum HOM05D005518 ORTHO05D001269 3.1e-06 57.8 402 25.1
A03p27800 Brassica napus HOM05D005518 ORTHO05D001269 4.0e-06 57.4 227 28.2
BraA03t11991Z Brassica rapa HOM05D005518 ORTHO05D001269 4.0e-06 57.4 227 28.2
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 5.3e-06 57.0 605 24.6
Gohir.A11G035500 Gossypium hirsutum HOM05D005518 ORTHO05D001269 5.3e-06 57.0 594 25.4
C03p33530 Brassica napus HOM05D005518 ORTHO05D001269 6.9e-06 56.6 223 28.3
BolC3t15674H Brassica oleracea HOM05D005518 ORTHO05D001269 6.9e-06 56.6 223 28.3
Thhalv10013029m.g Eutrema salsugineum HOM05D005518 ORTHO05D001269 6.9e-06 56.6 193 30.1
TWI14G0969 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 9.0e-06 56.2 289 24.9


User provided reference genes

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