Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 5.0e-91 337.8 178 100.0
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 2.1e-52 209.5 168 68.5
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 2.3e-51 206.1 164 68.9
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 5.1e-51 204.9 166 67.5
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.1e-50 203.8 172 66.3
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.3e-50 201.8 163 68.1
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 4.3e-50 201.8 168 66.1
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 7.4e-50 201.1 164 68.9
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 7.4e-50 201.1 164 68.3
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.7e-49 198.7 169 66.3
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.7e-49 198.7 171 63.2
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 1.4e-48 196.8 175 63.4
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 2.4e-48 196.1 147 71.4
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 4.0e-48 195.3 174 63.2
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 5.3e-48 194.9 147 71.4
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 5.3e-48 194.9 170 63.5
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 6.9e-48 194.5 170 64.1
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.6e-47 192.6 166 65.7
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 4.5e-47 191.8 113 91.2
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 7.6e-47 191.0 179 57.5
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 7.6e-47 191.0 158 66.5
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 9.9e-47 190.7 162 69.1
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.3e-46 190.3 169 63.3
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 2.9e-46 189.1 165 65.5
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.9e-46 189.1 179 59.2
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 3.8e-46 188.7 163 64.4
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 4.9e-46 188.3 163 61.3
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 4.9e-46 188.3 163 61.3
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 4.9e-46 188.3 163 61.3
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 4.9e-46 188.3 163 61.3
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 6.4e-46 188.0 165 64.2
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 8.4e-46 187.6 162 64.8
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.9e-45 186.4 163 63.2
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 3.2e-45 185.7 170 62.9
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.2e-45 185.7 166 62.7
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 4.2e-45 185.3 146 65.8
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 4.2e-45 185.3 172 59.9
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 5.5e-45 184.9 176 61.4
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 7.1e-45 184.5 179 60.3
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 9.3e-45 184.1 163 60.1
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 9.3e-45 184.1 163 60.1
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.2e-44 183.7 164 62.8
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 1.6e-44 183.3 176 58.0
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.6e-44 183.3 170 62.9
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.1e-44 183.0 173 60.1
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.1e-44 183.0 176 60.8
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.5e-44 182.2 174 60.9
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.6e-44 181.8 173 60.1
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 4.6e-44 181.8 173 57.2
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 6.0e-44 181.4 163 63.2
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 7.9e-44 181.0 171 59.1
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-43 179.9 174 59.8
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.3e-43 179.5 173 57.8
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 3.9e-43 178.7 166 60.2
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 3.9e-43 178.7 167 61.1
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 5.1e-43 178.3 180 59.4
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 5.1e-43 178.3 163 60.7
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 5.1e-43 178.3 179 55.3
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.1e-43 178.3 170 59.4
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.1e-43 178.3 175 56.6
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.1e-43 178.3 175 56.6
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 6.7e-43 177.9 176 58.5
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 8.7e-43 177.6 178 57.9
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 1.1e-42 177.2 183 53.6
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.5e-42 176.8 179 53.6
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 1.5e-42 176.8 166 59.0
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 1.9e-42 176.4 179 55.3
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.9e-42 176.4 166 59.6
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 2.5e-42 176.0 182 57.1
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 2.5e-42 176.0 162 61.1
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 3.3e-42 175.6 163 62.0
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 4.3e-42 175.3 180 55.0
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 9.6e-42 174.1 178 55.6
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 9.6e-42 174.1 165 63.0
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 2.1e-41 172.9 181 55.2
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 2.1e-41 172.9 187 56.7
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 2.8e-41 172.6 141 66.7
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 3.7e-41 172.2 145 65.5
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.7e-41 172.2 142 65.5
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.8e-41 171.8 174 56.9
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 6.2e-41 171.4 174 56.9
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 8.2e-41 171.0 216 46.3
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 8.2e-41 171.0 216 46.3
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.1e-40 170.6 166 59.0
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.4e-40 170.2 164 61.0
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 1.8e-40 169.9 164 56.7
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 1.8e-40 169.9 170 57.1
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 1.8e-40 169.9 170 57.1
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 1.8e-40 169.9 170 57.1
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 1.8e-40 169.9 182 54.9
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 3.1e-40 169.1 171 57.9
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 5.3e-40 168.3 163 58.9
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 1.2e-39 167.2 166 57.8
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 3.4e-39 165.6 179 53.6
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 4.5e-39 165.2 145 63.4
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 5.8e-39 164.9 164 54.9
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 5.8e-39 164.9 185 53.0
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 7.6e-39 164.5 170 55.3
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 7.6e-39 164.5 180 51.7
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 1.0e-38 164.1 180 56.7
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.3e-38 163.7 143 60.1
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 1.3e-38 163.7 166 57.2
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 1.3e-38 163.7 173 53.8
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 2.2e-38 162.9 165 60.6
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 2.9e-38 162.5 186 54.3
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 3.8e-38 162.2 180 55.6
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 4.9e-38 161.8 167 57.5
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 6.5e-38 161.4 142 61.3
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 8.4e-38 161.0 224 46.9
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.9e-37 159.8 133 63.9
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 3.2e-37 159.1 164 53.7
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 4.2e-37 158.7 178 54.5
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 7.1e-37 157.9 178 55.1
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 9.3e-37 157.5 163 54.0
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 1.2e-36 157.1 134 66.4
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.6e-36 156.8 179 50.3
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 2.1e-36 156.4 166 54.2
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 3.5e-36 155.6 173 53.8
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 7.9e-36 154.5 165 53.9
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 1.8e-35 153.3 143 59.4
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 2.3e-35 152.9 163 54.6
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 8.7e-35 151.0 173 50.9
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.1e-34 150.6 142 59.2
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 3.3e-34 149.1 140 60.0
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 3.3e-34 149.1 124 66.9
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 5.3e-32 141.7 121 61.2
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 1.2e-31 140.6 159 50.9
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.5e-31 140.2 138 58.0
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.0e-30 137.5 136 55.1
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 2.9e-30 136.0 134 61.2
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 1.9e-29 133.3 167 49.1
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 2.7e-28 129.4 152 51.3
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 4.6e-28 128.6 106 67.9
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 3.3e-26 122.5 168 46.4
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 5.7e-26 121.7 138 58.0
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 2.0e-23 113.2 186 41.4
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 2.6e-23 112.8 117 54.7
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 1.1e-21 107.5 172 44.2
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 7.2e-21 104.8 135 51.1
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.4e-19 100.5 126 51.6
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 1.8e-19 100.1 55 87.3
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.9e-19 99.0 128 46.9
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 2.6e-15 86.3 83 59.0
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 2.9e-14 82.8 120 42.5
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 6.5e-14 81.6 62 69.4
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 4.2e-13 79.0 144 43.8
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 6.7e-11 71.6 95 49.5
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 6.7e-11 71.6 149 37.6
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 1.7e-09 67.0 78 52.6
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 2.2e-06 56.6 72 41.7
MBI04_g25319_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 5.0e-06 55.5 99 39.4


User provided reference genes

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