Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu012766.1 Olea europaea HOM05D001750 ORTHO05D001825 8.3e-88 327.0 167 100.0
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 4.2e-63 245.0 182 71.4
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 6.2e-59 231.1 184 69.0
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 6.2e-59 231.1 184 69.0
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 6.2e-59 231.1 184 69.0
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 6.2e-59 231.1 184 69.0
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 4.0e-58 228.4 184 67.9
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 5.3e-58 228.0 178 69.1
Nn212s45208 Nelumbo nucifera HOM05D001750 ORTHO05D001825 5.3e-58 228.0 178 69.1
Solyc00g500195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 9.0e-58 227.3 184 67.4
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 1.2e-57 226.9 183 69.9
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 1.5e-57 226.5 185 68.1
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 7.6e-57 224.2 183 69.4
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 7.6e-57 224.2 183 69.4
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 9.9e-57 223.8 181 67.4
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 1.1e-55 220.3 181 66.3
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 1.4e-55 219.9 184 65.8
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 1.9e-55 219.5 184 66.8
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 2.7e-54 215.7 193 64.2
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.5e-54 215.3 175 66.3
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.5e-54 215.3 175 66.3
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.5e-54 215.3 175 66.3
HanXRQChr08g0212841 Helianthus annuus HOM05D001750 ORTHO05D001825 4.6e-54 214.9 174 69.0
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 3.0e-53 212.2 185 63.8
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 3.9e-53 211.8 185 63.8
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 3.9e-53 211.8 185 63.8
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 3.9e-53 211.8 185 63.8
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.9e-53 211.8 173 65.3
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 3.9e-53 211.8 181 63.5
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 3.9e-53 211.8 181 63.5
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 5.1e-53 211.5 185 63.8
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 5.1e-53 211.5 185 63.8
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 5.1e-53 211.5 175 65.7
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 6.7e-53 211.1 181 63.0
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 1.1e-52 210.3 185 63.8
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 6.2e-51 204.5 182 61.5
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 8.2e-51 204.1 178 62.4
Psat5g142840 Pisum sativum HOM05D001750 ORTHO05D001825 1.8e-50 203.0 166 65.7
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 6.9e-50 201.1 178 62.4
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 7.6e-49 197.6 157 68.8
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 7.6e-49 197.6 141 75.2
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 4.9e-48 194.9 168 67.3
HanXRQChr17g0557801 Helianthus annuus HOM05D001750 ORTHO05D001825 6.5e-48 194.5 141 73.8
Lalb_Chr03g0039401 Lupinus albus HOM05D001750 ORTHO05D001825 8.4e-48 194.1 153 67.3
Medtr0002s0200 Medicago truncatula HOM05D001750 ORTHO05D001825 2.5e-47 192.6 173 62.4
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 3.2e-47 192.2 161 64.6
EL10As28g24255 Beta vulgaris HOM05D001750 ORTHO05D001825 1.8e-45 186.4 185 58.4
Ciclev10030453m.g Citrus clementina HOM05D001750 ORTHO05D001825 3.9e-45 185.3 150 67.3
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 1.9e-44 183.0 166 59.0
Ciclev10013979m.g Citrus clementina HOM05D001750 ORTHO05D001825 1.9e-44 183.0 149 67.1
Ciclev10013982m.g Citrus clementina HOM05D001750 ORTHO05D001825 1.9e-44 183.0 149 67.1
Ciclev10013998m.g Citrus clementina HOM05D001750 ORTHO05D001825 1.9e-44 183.0 149 67.1
Ciclev10014001m.g Citrus clementina HOM05D001750 ORTHO05D001825 1.9e-44 183.0 149 67.1
Ciclev10018421m.g Citrus clementina HOM05D001750 ORTHO05D001825 1.9e-44 183.0 149 67.1
PGSC0003DMG400010958 Solanum tuberosum HOM05D001750 ORTHO05D001825 2.5e-44 182.6 130 73.1
Ciclev10013988m.g Citrus clementina HOM05D001750 ORTHO05D001825 5.7e-44 181.4 149 66.4
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 7.4e-44 181.0 140 69.3
Gorai.006G066100 Gossypium raimondii HOM05D001750 ORTHO05D001825 3.7e-43 178.7 139 69.1
AL7G50360 Arabidopsis lyrata HOM05D001750 ORTHO05D001825 1.1e-42 177.2 139 69.8
Gohir.D09G044501 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.1e-42 177.2 139 68.3
EL10Ac1g00371 Beta vulgaris HOM05D001750 ORTHO05D001825 1.8e-42 176.4 178 57.3
GSVIVG01004971001 Vitis vinifera HOM05D001750 ORTHO05D001825 3.1e-42 175.6 141 68.1
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 5.3e-42 174.9 166 58.4
HanXRQChr01g0020101 Helianthus annuus HOM05D001750 ORTHO05D001825 5.0e-40 168.3 126 73.0
Gohir.A07G167090 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.4e-39 166.8 130 68.5
Solyc12g033070.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.5e-36 156.0 132 62.9
Psat0ss8367g0120 Pisum sativum HOM05D001750 ORTHO05D001825 2.8e-35 152.5 122 68.9
Gorai.010G151000 Gossypium raimondii HOM05D001750 ORTHO05D001825 8.2e-35 151.0 134 61.9
SEGI_32159 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.8e-34 149.8 185 52.4
SEGI_35420 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.8e-34 149.8 185 52.4
BolC9t56810H Brassica oleracea HOM05D001750 ORTHO05D001825 2.7e-30 136.0 122 63.1
Oeu016296.1 Olea europaea HOM05D001750 ORTHO05D001825 6.1e-30 134.8 82 86.6
Nn031s41610 Nelumbo nucifera HOM05D001750 ORTHO05D001825 3.9e-29 132.1 114 65.8
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 1.5e-28 130.2 134 53.0
Solyc02g011710.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.2e-27 126.3 123 57.7
Oeu058353.1 Olea europaea HOM05D001750 ORTHO05D001825 3.8e-24 115.5 73 84.9
unitig_736.g22737 Utricularia gibba HOM05D001750 ORTHO05D001825 6.5e-24 114.8 97 64.9
Solyc11g044645.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.5e-20 103.6 122 51.6
CARHR212490 Cardamine hirsuta HOM05D001750 ORTHO05D001825 4.4e-20 102.1 94 62.8
BolSC43t60806H Brassica oleracea HOM05D001750 ORTHO05D001825 1.3e-19 100.5 92 63.0
Lalb_Chr07g0191701 Lupinus albus HOM05D001750 ORTHO05D001825 2.2e-19 99.8 92 57.6
Glyma.11G081100 Glycine max HOM05D001750 ORTHO05D001825 4.8e-19 98.6 94 59.6
SEGI_32489 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 6.3e-19 98.2 93 61.3
Lsat_1_v5_gn_5_52761 Lactuca sativa HOM05D001750 ORTHO05D001825 1.4e-18 97.1 91 62.6
arahy.Tifrunner.gnm1.ann1.4DVC71 Arachis hypogaea HOM05D001750 ORTHO05D001825 2.4e-18 96.3 72 66.7
Migut.D01382 Erythranthe guttata HOM05D001750 ORTHO05D001825 7.0e-18 94.7 132 47.7
Lalb_Chr16g0388571 Lupinus albus HOM05D001750 ORTHO05D001825 7.0e-18 94.7 90 57.8
Lj9P89T20 Lonicera japonica HOM05D001750 ORTHO05D001825 9.1e-18 94.4 69 71.0
SMO086G0048 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 7.7e-17 91.3 127 48.0
SEGI_16404 Sequoiadendron giganteum HOM05D001387 ORTHO05D001250 7.2e-15 84.7 78 62.8
Solyc12g033000.1 Solanum lycopersicum HOM05D000388 ORTHO05D000473 1.2e-14 84.0 81 59.3
Psat0s6638g0080 Pisum sativum HOM05D001750 ORTHO05D001825 2.7e-14 82.8 71 63.4
Psat0s8829g0080 Pisum sativum HOM05D001750 ORTHO05D001825 2.7e-14 82.8 71 63.4
Psat4g065280 Pisum sativum HOM05D001750 ORTHO05D001825 2.7e-14 82.8 71 63.4
SalBow1G5472 Salvia bowleyana HOM05D001750 ORTHO05D001825 2.7e-14 82.8 68 67.6
Medtr3g032590 Medicago truncatula HOM05D000267 ORTHO05D016230 6.1e-14 81.6 76 57.9
Gohir.D06G115850 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.0e-13 79.3 93 48.4
BolSC46t60963H Brassica oleracea HOM05D001750 ORTHO05D001825 4.0e-13 79.0 65 67.7
Gorai.010G133500 Gossypium raimondii HOM05D001750 ORTHO05D001825 4.0e-13 79.0 91 48.4
Oeu058634.1 Olea europaea HOM05D001750 ORTHO05D001825 4.0e-13 79.0 66 66.7
Solyc05g013100.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.5e-12 77.0 104 48.1
BolSC35t60699H Brassica oleracea HOM05D001750 ORTHO05D001825 2.6e-12 76.3 70 54.3
Nn1g09725 Nelumbo nucifera HOM05D001750 ORTHO05D001825 7.5e-12 74.7 65 63.1
Solyc01g017230.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.8e-10 70.1 62 58.1
Nitab4.5_0007400g0130 Nicotiana tabacum HOM05D001750 ORTHO05D001825 3.1e-10 69.3 75 54.7
Solyc01g017100.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.1e-10 68.9 63 61.9
BraSC138t45539Z Brassica rapa HOM05D001750 ORTHO05D001825 9.1e-10 67.8 61 63.9
SEGI_05928 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.2e-09 67.4 64 60.9
TPR.G33669 Trifolium pratense HOM05D001750 ORTHO05D001825 1.0e-08 64.3 60 60.0
Mapoly0092s0002 Marchantia polymorpha HOM05D001750 ORTHO05D001825 1.3e-08 63.9 77 46.8
Gorai.002G182500 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.7e-08 63.5 91 40.7
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 2.2e-08 63.2 58 56.9
Haze_27121 Corylus avellana HOM05D001750 ORTHO05D001825 5.0e-08 62.0 131 34.4
unitig_91.g26524 Utricularia gibba HOM05D001750 ORTHO05D001825 1.1e-07 60.8 56 62.5
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.5e-07 60.5 125 36.0
TAR022G0005 Trochodendron aralioides HOM05D001750 ORTHO05D001825 1.9e-07 60.1 141 34.0
HanXRQChr11g0323711 Helianthus annuus HOM05D001750 ORTHO05D001825 2.5e-07 59.7 34 85.3
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 2.5e-07 59.7 88 47.7
Solyc11g021190.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 3.2e-07 59.3 57 61.4
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 4.2e-07 58.9 120 35.8
BolSC28t60406H Brassica oleracea HOM05D001750 ORTHO05D001825 4.2e-07 58.9 120 35.0
BolSC28t60420H Brassica oleracea HOM05D001750 ORTHO05D001825 4.2e-07 58.9 120 35.0
BraSC77t46633Z Brassica rapa HOM05D001750 ORTHO05D001825 4.2e-07 58.9 120 35.0
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 4.2e-07 58.9 120 35.8
Sp3g25940 Schrenkiella parvula HOM05D001750 ORTHO05D001825 4.2e-07 58.9 120 35.0
Zm00001eb384430 Zea mays HOM05D001750 ORTHO05D001825 4.2e-07 58.9 120 35.8
Zm00001eb384490 Zea mays HOM05D001750 ORTHO05D001825 4.2e-07 58.9 120 35.8
Zm00001eb437920 Zea mays HOM05D001750 ORTHO05D001825 4.2e-07 58.9 120 35.8
Zm00001eb438010 Zea mays HOM05D001750 ORTHO05D001825 4.2e-07 58.9 120 35.8
Zm00001eb439010 Zea mays HOM05D001750 ORTHO05D001825 4.2e-07 58.9 120 35.8
Zm00001eb440820 Zea mays HOM05D001750 ORTHO05D001825 4.2e-07 58.9 120 35.8
Zm00001eb442540 Zea mays HOM05D001750 ORTHO05D001825 4.2e-07 58.9 120 35.8
Ah.10g027940 Amaranthus hybridus HOM05D001750 ORTHO05D001825 7.2e-07 58.2 120 35.8
Ah.10g028650 Amaranthus hybridus HOM05D001750 ORTHO05D001825 7.2e-07 58.2 120 35.8
Cpa.g.sc900.3 Carica papaya HOM05D001750 ORTHO05D001825 7.2e-07 58.2 120 35.8
AUR62042331 Chenopodium quinoa HOM05D001750 ORTHO05D001825 7.2e-07 58.2 120 35.8
FvH4_c1g00470 Fragaria vesca HOM05D001750 ORTHO05D001825 7.2e-07 58.2 120 35.8
FAN14G4205 Fragaria x ananassa HOM05D001750 ORTHO05D001825 7.2e-07 58.2 120 35.8
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 7.2e-07 58.2 120 35.8
RcHm_v2.0_MTg0498221 Rosa chinensis HOM05D001750 ORTHO05D001825 7.2e-07 58.2 120 35.8
Hma1.2p1_1529F.1_g289140 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 9.4e-07 57.8 108 36.1
Hund29121 Selenicereus undatus HOM05D001750 ORTHO05D001825 9.4e-07 57.8 114 35.1
Lalb_Chr17g0337371 Lupinus albus HOM05D001750 ORTHO05D001825 1.2e-06 57.4 120 35.8
RhsimMtG0004100 Rhododendron simsii HOM05D001750 ORTHO05D001825 1.2e-06 57.4 107 36.4
Hund27692 Selenicereus undatus HOM05D001750 ORTHO05D001825 1.2e-06 57.4 120 35.8
Hund29041 Selenicereus undatus HOM05D001750 ORTHO05D001825 1.2e-06 57.4 120 35.8
Hund31001 Selenicereus undatus HOM05D001750 ORTHO05D001825 1.2e-06 57.4 120 35.8
arahy.Tifrunner.gnm1.ann1.BE3YYP Arachis hypogaea HOM05D001750 ORTHO05D001825 1.6e-06 57.0 106 36.8
CAN.G134.25 Capsicum annuum HOM05D001750 ORTHO05D001825 1.6e-06 57.0 120 35.8
Glyma.15G187600 Glycine max HOM05D001750 ORTHO05D001825 1.6e-06 57.0 120 35.0
Glyma.15G187800 Glycine max HOM05D001750 ORTHO05D001825 1.6e-06 57.0 120 35.0
Hma1.2p1_0034F.1_g021420 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.6e-06 57.0 106 36.8
CAN.G1159.8 Capsicum annuum HOM05D001750 ORTHO05D001825 2.1e-06 56.6 109 35.8
Cfa005537 Carpinus fangiana HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
LjContig00315g0010666 Lotus japonicus HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
PSO017G5352 Papaver somniferum HOM05D001750 ORTHO05D001825 2.1e-06 56.6 114 32.5
Phvul.005G088400 Phaseolus vulgaris HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
SabraMtG0002600 Salix brachista HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
SalBow1G5977 Salvia bowleyana HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
Sed0023702 Sechium edule HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
Solyc00g500098.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
Solyc00g500169.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
Solyc00g500271.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
Solyc00g500317.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
SGA_v2.0_scaffold245G44452 Striga asiatica HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
TPR.G28320 Trifolium pratense HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
VMungo0329G0001 Vigna mungo HOM05D001750 ORTHO05D001825 2.1e-06 56.6 120 35.8
Ca_22167_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 2.7e-06 56.2 83 41.0
Ca_22168_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 2.7e-06 56.2 83 41.0
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 2.7e-06 56.2 125 35.2
Gohir.D02G112150 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.6e-06 55.8 34 79.4
Gorai.005G127100 Gossypium raimondii HOM05D001750 ORTHO05D001825 3.6e-06 55.8 34 79.4
SHI35585 Sapria himalayana HOM05D001750 ORTHO05D001825 3.6e-06 55.8 108 34.3
SMO053G0013 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 3.6e-06 55.8 83 41.0
unitig_87.g28030 Utricularia gibba HOM05D001750 ORTHO05D001825 3.6e-06 55.8 120 35.8
Migut.L00571 Erythranthe guttata HOM05D001750 ORTHO05D001825 4.7e-06 55.5 34 76.5
FAN14G0206 Fragaria x ananassa HOM05D001750 ORTHO05D001825 4.7e-06 55.5 120 34.2
Glyma.06G151800 Glycine max HOM05D001750 ORTHO05D001825 4.7e-06 55.5 104 39.4
Gohir.A04G039180 Gossypium hirsutum HOM05D001750 ORTHO05D001825 4.7e-06 55.5 28 96.4
ECA234G2654 Erigeron canadensis HOM05D001750 ORTHO05D001825 6.1e-06 55.1 106 35.8
Nn117s43418 Nelumbo nucifera HOM05D001750 ORTHO05D001825 6.1e-06 55.1 114 34.2
Nn1g10189 Nelumbo nucifera HOM05D001750 ORTHO05D001825 6.1e-06 55.1 114 34.2


User provided reference genes

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