Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 5.9e-109 397.5 195 100.0
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 2.0e-88 329.3 194 80.9
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 1.3e-87 326.6 195 80.5
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 2.8e-87 325.5 193 79.3
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 8.2e-87 323.9 193 78.8
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 1.1e-86 323.6 194 80.4
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 2.9e-84 315.5 194 77.8
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 3.8e-84 315.1 190 78.9
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 9.4e-83 310.5 190 76.3
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.6e-82 309.7 191 76.4
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 2.7e-82 308.9 194 76.8
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 3.6e-82 308.5 189 76.7
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 1.5e-80 303.1 194 73.2
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 7.5e-80 300.8 187 75.4
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 1.7e-79 299.7 189 74.6
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 4.8e-79 298.1 182 75.8
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.4e-78 296.6 189 73.5
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 1.4e-78 296.6 189 74.6
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 3.1e-78 295.4 193 71.5
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 7.0e-78 294.3 190 73.2
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.0e-77 292.7 192 71.4
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 5.9e-77 291.2 192 71.9
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 5.9e-77 291.2 194 72.2
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 5.9e-77 291.2 192 73.4
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 5.9e-77 291.2 192 73.4
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 7.7e-77 290.8 189 70.9
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 2.9e-76 288.9 189 72.0
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 2.9e-76 288.9 190 73.7
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 5.0e-76 288.1 190 72.6
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 6.5e-76 287.7 194 70.1
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 4.2e-75 285.0 189 70.9
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 4.2e-75 285.0 194 72.7
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 9.5e-75 283.9 187 73.3
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 1.2e-74 283.5 193 69.4
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 2.1e-74 282.7 191 68.6
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 1.0e-73 280.4 192 69.8
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 1.0e-73 280.4 192 69.8
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 1.4e-73 280.0 191 70.2
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 3.0e-73 278.9 189 72.5
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.5e-72 276.6 177 78.0
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 2.0e-72 276.2 197 67.5
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 2.6e-72 275.8 176 77.8
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 2.6e-72 275.8 189 67.2
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 7.5e-72 274.2 191 70.7
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 1.3e-71 273.5 194 69.1
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.3e-71 273.5 192 67.7
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 1.3e-71 273.5 192 67.7
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 1.3e-71 273.5 187 69.0
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 2.2e-71 272.7 190 68.9
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 6.3e-71 271.2 192 67.2
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 6.3e-71 271.2 196 66.8
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 8.3e-71 270.8 189 67.7
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 1.1e-70 270.4 188 68.6
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 2.4e-70 269.2 188 69.1
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 3.1e-70 268.9 192 66.7
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 3.1e-70 268.9 166 75.3
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 4.1e-70 268.5 193 67.4
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 4.1e-70 268.5 188 69.1
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 5.4e-70 268.1 192 67.7
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.2e-69 266.9 200 66.0
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 1.2e-69 266.9 166 74.7
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 2.0e-69 266.2 194 67.5
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 3.5e-69 265.4 188 66.0
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 3.5e-69 265.4 177 74.0
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 3.5e-69 265.4 190 70.0
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 4.5e-69 265.0 188 67.6
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 2.3e-68 262.7 197 66.0
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 1.1e-67 260.4 194 64.9
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 1.5e-67 260.0 189 65.6
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.5e-67 260.0 187 66.3
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 2.5e-67 259.2 195 65.1
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 5.6e-67 258.1 197 65.0
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 5.6e-67 258.1 187 66.8
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 7.3e-67 257.7 190 66.8
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 2.8e-66 255.8 189 65.6
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 3.6e-66 255.4 192 64.1
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 4.7e-66 255.0 197 64.0
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 8.0e-66 254.2 190 66.3
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 1.0e-65 253.8 197 64.0
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 1.0e-65 253.8 197 64.0
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.5e-64 250.0 191 63.9
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 2.0e-64 249.6 199 62.3
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.1e-62 243.8 182 63.7
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 2.0e-61 239.6 187 61.0
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 7.3e-59 231.1 188 59.0
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 2.1e-58 229.6 176 64.8
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 2.8e-58 229.2 193 59.1
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 3.6e-58 228.8 193 57.5
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 8.9e-57 224.2 169 65.1
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 6.4e-55 218.0 146 69.2
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 1.1e-51 207.2 187 55.1
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 1.2e-48 197.2 190 54.2
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.7e-47 193.4 149 62.4
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 4.9e-47 191.8 197 50.3
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 3.5e-45 185.7 187 51.3
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 2.5e-43 179.5 115 69.6
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 3.1e-33 146.0 103 66.0
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 6.9e-33 144.8 91 75.8
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 4.9e-31 138.7 79 84.8
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 3.2e-30 136.0 112 63.4
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 4.8e-26 122.1 81 75.3
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 6.0e-21 105.1 94 56.4
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 6.7e-20 101.7 144 44.4
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 2.5e-19 99.8 76 63.2
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 2.5e-19 99.8 76 63.2
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 4.3e-19 99.0 92 53.3
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 4.8e-18 95.5 73 64.4
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 3.3e-11 72.8 49 63.3
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 4.3e-11 72.4 164 29.9
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 5.6e-11 72.0 180 30.0
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.1e-10 70.1 182 28.6
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 2.1e-10 70.1 165 30.9
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 4.8e-10 68.9 179 29.1
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 6.2e-10 68.6 172 30.2
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 8.2e-10 68.2 165 31.5
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 1.1e-09 67.8 148 30.4
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 3.1e-09 66.2 172 31.4
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 3.1e-09 66.2 181 28.7
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 9.0e-09 64.7 187 26.7
Cre06.g305500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 2.0e-08 63.5 147 29.9
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 2.0e-08 63.5 175 30.3
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 7.6e-08 61.6 176 29.0
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 7.6e-08 61.6 176 29.0
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 7.6e-08 61.6 176 29.0
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 7.6e-08 61.6 176 30.1
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.3e-07 60.8 199 26.1
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 2.9e-07 59.7 175 29.1
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 3.8e-07 59.3 180 28.3
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 4.9e-07 58.9 137 27.7
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 7.1e-06 55.1 144 28.5


User provided reference genes

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