Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 2.5e-175 618.6 302 100.0
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 1.4e-125 453.4 298 74.2
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 6.5e-123 444.5 294 73.1
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 1.9e-122 443.0 296 72.6
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 1.2e-121 440.3 294 72.4
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 8.8e-120 434.1 293 73.0
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 3.7e-118 428.7 298 72.1
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 4.8e-118 428.3 277 74.4
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 6.3e-118 427.9 296 70.3
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.4e-117 426.8 286 71.7
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 3.4e-116 422.2 289 70.2
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.1e-114 417.2 297 69.4
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 1.9e-114 416.4 298 65.8
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 4.2e-114 415.2 297 69.0
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 7.2e-114 414.5 300 66.3
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 3.6e-113 412.1 297 66.7
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 7.9e-113 411.0 284 68.7
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 7.9e-113 411.0 254 76.4
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 3.0e-112 409.1 299 65.9
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 1.1e-111 407.1 291 65.6
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 1.5e-111 406.8 291 69.8
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 2.0e-111 406.4 279 70.6
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 4.4e-111 405.2 275 68.4
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 4.4e-111 405.2 288 69.1
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 4.8e-110 401.7 293 66.2
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 8.2e-110 401.0 290 66.2
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 8.2e-110 401.0 296 65.2
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 8.2e-110 401.0 296 65.2
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 1.1e-109 400.6 294 65.6
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 2.4e-109 399.4 283 66.4
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 5.3e-109 398.3 255 75.7
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 5.3e-109 398.3 290 65.5
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 7.0e-109 397.9 257 73.9
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 7.0e-109 397.9 287 66.6
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 9.1e-109 397.5 257 73.5
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 1.2e-108 397.1 297 67.3
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.0e-108 396.4 290 67.6
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 2.6e-108 396.0 287 67.6
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 3.5e-108 395.6 283 65.4
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.5e-108 395.6 257 73.5
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 3.5e-108 395.6 284 68.0
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 4.5e-108 395.2 271 70.1
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 7.7e-108 394.4 286 65.4
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 1.3e-107 393.7 274 68.2
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.3e-107 393.7 283 66.8
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 5.0e-107 391.7 280 69.3
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 5.0e-107 391.7 255 74.9
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 6.5e-107 391.3 289 68.2
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 2.5e-106 389.4 299 63.5
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 1.6e-105 386.7 285 65.6
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.0e-104 384.0 303 63.7
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 1.8e-104 383.3 286 66.1
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 4.0e-104 382.1 300 64.0
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 4.0e-104 382.1 284 64.8
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 4.0e-104 382.1 300 63.7
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 5.2e-104 381.7 277 67.1
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 5.2e-104 381.7 292 64.7
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 8.8e-104 380.9 283 65.4
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 3.3e-103 379.0 283 65.0
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 7.4e-103 377.9 293 64.8
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 9.7e-103 377.5 294 63.3
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 9.7e-103 377.5 286 65.4
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.3e-102 377.1 232 76.3
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.7e-102 376.7 240 73.8
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 1.7e-102 376.7 288 64.9
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 2.2e-102 376.3 293 63.8
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 2.2e-102 376.3 290 64.1
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.8e-102 375.9 289 66.1
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 2.8e-102 375.9 290 64.1
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 6.3e-102 374.8 282 65.2
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 3.1e-101 372.5 264 67.4
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 4.1e-101 372.1 281 65.1
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 5.9e-100 368.2 296 62.5
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 7.7e-100 367.9 269 65.1
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 1.0e-99 367.5 242 74.4
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 1.7e-99 366.7 256 68.0
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 3.8e-99 365.5 296 62.2
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 7.2e-98 361.3 294 59.2
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 9.4e-98 360.9 295 61.0
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 1.2e-97 360.5 265 64.9
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 5.2e-96 355.1 240 72.9
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 1.4e-93 347.1 263 62.4
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.6e-92 343.6 255 68.6
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.3e-91 340.5 212 77.4
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 1.7e-91 340.1 309 55.7
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 3.8e-91 339.0 284 55.6
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.5e-90 337.0 254 60.2
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 3.2e-90 335.9 232 70.3
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 4.2e-90 335.5 258 60.5
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 7.2e-90 334.7 379 45.6
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 2.1e-89 333.2 269 57.2
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 6.1e-89 331.6 280 57.9
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 6.8e-88 328.2 290 56.6
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 1.2e-87 327.4 265 63.0
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 1.1e-85 320.9 231 67.1
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 7.7e-84 314.7 282 54.6
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.3e-83 313.9 228 65.4
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 3.6e-81 305.8 271 54.2
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 4.7e-81 305.4 269 55.0
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 4.7e-81 305.4 269 55.0
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 4.7e-81 305.4 269 55.0
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 6.1e-81 305.1 255 56.1
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 2.3e-80 303.1 276 53.6
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 4.0e-80 302.4 276 54.0
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 4.0e-80 302.4 276 54.0
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 6.8e-80 301.6 246 56.9
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 6.8e-80 301.6 253 61.3
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 1.5e-79 300.4 269 53.2
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 3.4e-79 299.3 278 52.9
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 9.8e-79 297.7 218 64.7
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 6.4e-78 295.0 267 53.9
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.1e-77 294.3 204 67.6
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 1.4e-77 293.9 276 51.8
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 1.4e-72 277.3 293 47.1
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 1.2e-71 274.2 217 57.1
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 3.7e-70 269.2 252 54.4
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 8.6e-67 258.1 213 55.4
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 3.6e-65 252.7 257 49.4
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 1.1e-58 231.1 229 48.9
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 2.5e-58 229.9 283 46.6
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 4.0e-56 222.6 137 73.7
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 4.4e-55 219.2 201 59.7
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 6.4e-54 215.3 257 44.4
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 7.3e-50 201.8 230 44.8
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 7.3e-42 175.3 121 66.9
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 6.4e-38 162.2 267 34.8
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 3.2e-29 133.3 124 50.0
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 6.0e-28 129.0 100 66.0
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 1.5e-26 124.4 214 33.6
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 4.2e-21 106.3 178 36.5
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 6.7e-19 99.0 158 34.2
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 9.6e-18 95.1 107 49.5
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 1.8e-16 90.9 91 53.8
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 9.0e-16 88.6 77 53.2
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 7.2e-13 79.0 56 62.5
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 1.0e-11 75.1 48 72.9
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 2.8e-09 67.0 48 60.4
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 1.2e-07 61.6 266 26.3
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 8.5e-06 55.5 94 33.0


User provided reference genes

Program Settings