Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu012217.1 Olea europaea HOM05D002272 ORTHO05D005405 1.3e-47 192.6 90 100.0
MSTRG.10168 Avicennia marina HOM05D002272 ORTHO05D005405 1.2e-43 179.5 90 88.9
Migut.G00004 Erythranthe guttata HOM05D002272 ORTHO05D005405 1.5e-43 179.1 90 90.0
Migut.O00400 Erythranthe guttata HOM05D002272 ORTHO05D005405 1.5e-43 179.1 90 90.0
SGA_v2.0_scaffold157G37389 Striga asiatica HOM05D002272 ORTHO05D005405 3.4e-43 177.9 90 90.0
SalBow8G2239 Salvia bowleyana HOM05D002272 ORTHO05D005405 6.4e-42 173.7 90 85.6
FAN07G0753 Fragaria x ananassa HOM05D002272 ORTHO05D005405 4.1e-41 171.0 90 84.4
FAN17G2520 Fragaria x ananassa HOM05D002272 ORTHO05D005405 4.1e-41 171.0 90 84.4
RcHm_v2.0_Chr4g0427531 Rosa chinensis HOM05D002272 ORTHO05D005405 4.1e-41 171.0 90 84.4
unitig_8.g3105 Utricularia gibba HOM05D002272 ORTHO05D005405 4.1e-41 171.0 90 84.4
Lj6A701G45 Lonicera japonica HOM05D002272 ORTHO05D005405 7.0e-41 170.2 90 85.6
Cc03_g00130 Coffea canephora HOM05D002272 ORTHO05D005405 9.2e-41 169.9 90 85.6
MD13G1139500 Malus domestica HOM05D002272 ORTHO05D005405 9.2e-41 169.9 90 85.6
FvH4_4g21510 Fragaria vesca HOM05D002272 ORTHO05D005405 1.2e-40 169.5 90 83.3
FAN12G3762 Fragaria x ananassa HOM05D002272 ORTHO05D005405 1.2e-40 169.5 90 83.3
Solyc03g117320.4 Solanum lycopersicum HOM05D002272 ORTHO05D005405 3.5e-40 167.9 90 86.7
Sopen03g036210 Solanum pennellii HOM05D002272 ORTHO05D005405 3.5e-40 167.9 90 86.7
Cfa015730 Carpinus fangiana HOM05D002272 ORTHO05D005405 4.6e-40 167.5 90 84.4
CDE01G0715 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 6.0e-40 167.2 90 85.6
Dinv29507 Davidia involucrata HOM05D002272 ORTHO05D005405 6.0e-40 167.2 90 85.6
MD16G1136200 Malus domestica HOM05D002272 ORTHO05D005405 7.8e-40 166.8 90 84.4
arahy.Tifrunner.gnm1.ann1.E0PE5U Arachis hypogaea HOM05D002272 ORTHO05D005405 1.0e-39 166.4 90 85.6
MBI13_g24903_MAGBIO Magnolia biondii HOM05D002272 ORTHO05D005405 1.0e-39 166.4 90 85.6
PGSC0003DMG400014202 Solanum tuberosum HOM05D002272 ORTHO05D005405 1.0e-39 166.4 90 85.6
Glyma.12G225000 Glycine max HOM05D002272 ORTHO05D005405 1.7e-39 165.6 90 83.3
CDE12G0965 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 2.3e-39 165.2 90 84.4
Actinidia18507 Actinidia chinensis HOM05D002272 ORTHO05D005405 3.0e-39 164.9 90 83.3
CSS0028739 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 3.0e-39 164.9 90 83.3
CSS0045814 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 3.0e-39 164.9 90 83.3
Thhalv10021142m.g Eutrema salsugineum HOM05D002272 ORTHO05D005405 3.0e-39 164.9 90 83.3
Glyma.13G276300 Glycine max HOM05D002272 ORTHO05D005405 3.0e-39 164.9 90 83.3
Hma1.2p1_0013F.1_g007910 Hydrangea macrophylla HOM05D002272 ORTHO05D005405 3.0e-39 164.9 90 83.3
Medtr6g006970 Medicago truncatula HOM05D002272 ORTHO05D005405 3.0e-39 164.9 90 82.2
Nn4g26701 Nelumbo nucifera HOM05D002272 ORTHO05D005405 3.0e-39 164.9 90 84.4
Phvul.005G012100 Phaseolus vulgaris HOM05D002272 ORTHO05D005405 3.0e-39 164.9 90 83.3
Hund14390 Selenicereus undatus HOM05D002272 ORTHO05D005405 3.0e-39 164.9 90 83.3
arahy.Tifrunner.gnm1.ann1.Z0DKXY Arachis hypogaea HOM05D002272 ORTHO05D005405 3.9e-39 164.5 90 84.4
C01p46710 Brassica napus HOM05D002272 ORTHO05D005405 3.9e-39 164.5 90 82.2
BolC1t04639H Brassica oleracea HOM05D002272 ORTHO05D005405 3.9e-39 164.5 90 82.2
BcaB04g20838 Brassica carinata HOM05D002272 ORTHO05D005405 5.0e-39 164.1 90 82.2
Dinv18018 Davidia involucrata HOM05D002272 ORTHO05D005405 5.0e-39 164.1 90 84.4
Lalb_Chr04g0247221 Lupinus albus HOM05D002272 ORTHO05D005405 5.0e-39 164.1 90 83.3
QL06p014217 Quercus lobata HOM05D002272 ORTHO05D005405 5.0e-39 164.1 89 80.9
Sp3g15640 Schrenkiella parvula HOM05D002272 ORTHO05D005405 5.0e-39 164.1 90 82.2
VMungo1080G0714 Vigna mungo HOM05D002272 ORTHO05D005405 5.0e-39 164.1 90 83.3
Rhsim04G0248300 Rhododendron simsii HOM05D002272 ORTHO05D005405 6.6e-39 163.7 90 84.4
CiPaw.01G129200 Carya illinoinensis HOM05D002272 ORTHO05D005405 8.6e-39 163.3 90 82.2
Ca_06467_v3 Cicer arietinum L. HOM05D002272 ORTHO05D005405 8.6e-39 163.3 90 82.2
Haze_00766 Corylus avellana HOM05D002272 ORTHO05D005405 8.6e-39 163.3 86 84.9
BcaB06g25841 Brassica carinata HOM05D002272 ORTHO05D005405 1.1e-38 162.9 90 82.2
Ciclev10007196m.g Citrus clementina HOM05D002272 ORTHO05D005405 1.5e-38 162.5 89 82.0
TPR.G18850 Trifolium pratense HOM05D002272 ORTHO05D005405 1.9e-38 162.2 90 80.0
TPR.G2257 Trifolium pratense HOM05D002272 ORTHO05D005405 1.9e-38 162.2 90 78.9
BcaB04g18943 Brassica carinata HOM05D002272 ORTHO05D005405 2.5e-38 161.8 90 80.0
BcaC05g28788 Brassica carinata HOM05D002272 ORTHO05D005405 2.5e-38 161.8 90 82.2
C05p48970 Brassica napus HOM05D002272 ORTHO05D005405 2.5e-38 161.8 90 82.2
BolC5t33637H Brassica oleracea HOM05D002272 ORTHO05D005405 2.5e-38 161.8 90 82.2
DCAR_002551 Daucus carota HOM05D002272 ORTHO05D005405 2.5e-38 161.8 90 82.2
Thecc.04G313100 Theobroma cacao HOM05D002272 ORTHO05D005405 2.5e-38 161.8 90 82.2
GSVIVG01017688001 Vitis vinifera HOM05D002272 ORTHO05D005405 2.5e-38 161.8 90 81.1
Gohir.D02G064300 Gossypium hirsutum HOM05D002272 ORTHO05D005405 3.3e-38 161.4 90 78.9
Psat1g056160 Pisum sativum HOM05D002272 ORTHO05D005405 3.3e-38 161.4 90 80.0
Prupe.1G105200 Prunus persica HOM05D002272 ORTHO05D005405 4.3e-38 161.0 90 82.2
HPP92_026061 Vanilla planifolia HOM05D002272 ORTHO05D005405 4.3e-38 161.0 90 81.1
Carub.0003s1719 Capsella rubella HOM05D002272 ORTHO05D005405 5.6e-38 160.6 90 81.1
CARHR092790 Cardamine hirsuta HOM05D002272 ORTHO05D005405 7.3e-38 160.2 90 78.9
Lj3g0022905 Lotus japonicus HOM05D002272 ORTHO05D005405 7.3e-38 160.2 90 80.0
vmacro08012 Vaccinium macrocarpon HOM05D002272 ORTHO05D005405 7.3e-38 160.2 90 83.3
A01p36790 Brassica napus HOM05D002272 ORTHO05D005405 9.5e-38 159.8 91 81.3
BraA01t03740Z Brassica rapa HOM05D002272 ORTHO05D005405 9.5e-38 159.8 91 81.3
TWI75G1791 Tripterygium wilfordii HOM05D002272 ORTHO05D005405 9.5e-38 159.8 90 80.0
Medtr1g093060 Medicago truncatula HOM05D002272 ORTHO05D005405 1.2e-37 159.5 90 78.9
THA.LOC104815360 Tarenaya hassleriana HOM05D002272 ORTHO05D005405 1.2e-37 159.5 90 81.1
CANSAT78G0846 Cannabis sativa HOM05D002272 ORTHO05D005405 1.6e-37 159.1 90 80.0
Lsat_1_v5_gn_6_118081 Lactuca sativa HOM05D002272 ORTHO05D005405 1.6e-37 159.1 90 81.1
Medtr2g090370 Medicago truncatula HOM05D002272 ORTHO05D005405 1.6e-37 159.1 86 81.4
AL3G30550 Arabidopsis lyrata HOM05D002272 ORTHO05D005405 2.1e-37 158.7 90 81.1
AT3G17465 Arabidopsis thaliana HOM05D002272 ORTHO05D005405 2.1e-37 158.7 90 81.1
A05p32330 Brassica napus HOM05D002272 ORTHO05D005405 2.1e-37 158.7 90 80.0
BraA05t22061Z Brassica rapa HOM05D002272 ORTHO05D005405 2.1e-37 158.7 90 80.0
ECA246G1461 Erigeron canadensis HOM05D002272 ORTHO05D005405 2.1e-37 158.7 90 81.1
Hund04488 Selenicereus undatus HOM05D002272 ORTHO05D005405 2.1e-37 158.7 90 80.0
Sc18g0007250 Simmondsia chinensis HOM05D002272 ORTHO05D005405 2.1e-37 158.7 90 80.0
TAR636G1706 Trochodendron aralioides HOM05D002272 ORTHO05D005405 2.8e-37 158.3 90 80.0
Cpa.g.sc146.23 Carica papaya HOM05D002272 ORTHO05D005405 4.7e-37 157.5 90 78.9
HanXRQChr05g0149261 Helianthus annuus HOM05D002272 ORTHO05D005405 6.2e-37 157.1 90 80.0
Peaxi162Scf00126g01027 Petunia axillaris HOM05D002272 ORTHO05D005405 6.2e-37 157.1 90 82.2
PGR004G1245 Punica granatum HOM05D002272 ORTHO05D005405 8.0e-37 156.8 90 80.0
Ah.07g201130 Amaranthus hybridus HOM05D002272 ORTHO05D005405 1.1e-36 156.4 90 78.9
TAR365G0404 Trochodendron aralioides HOM05D002272 ORTHO05D005405 1.1e-36 156.4 90 78.9
CiPaw.02G069200 Carya illinoinensis HOM05D002272 ORTHO05D005405 1.4e-36 156.0 90 80.0
Eucgr.H04124 Eucalyptus grandis HOM05D002272 ORTHO05D005405 2.3e-36 155.2 90 77.8
PSO210G1506 Papaver somniferum HOM05D002272 ORTHO05D005405 2.3e-36 155.2 90 78.9
COL.COLO4_34516 Corchorus olitorius HOM05D002272 ORTHO05D005405 3.1e-36 154.8 90 80.0
Gorai.005G072600 Gossypium raimondii HOM05D002272 ORTHO05D005405 3.1e-36 154.8 90 75.6
Nitab4.5_0001437g0040 Nicotiana tabacum HOM05D002272 ORTHO05D005405 3.1e-36 154.8 90 82.2
Nitab4.5_0005622g0030 Nicotiana tabacum HOM05D002272 ORTHO05D005405 3.1e-36 154.8 90 82.2
PSO761G0243 Papaver somniferum HOM05D002272 ORTHO05D005405 4.0e-36 154.5 90 78.9
EL10Ac5g11978 Beta vulgaris HOM05D002272 ORTHO05D005405 6.8e-36 153.7 90 76.7
AUR62007379 Chenopodium quinoa HOM05D002272 ORTHO05D005405 6.8e-36 153.7 90 75.6
AUR62018609 Chenopodium quinoa HOM05D002272 ORTHO05D005405 6.8e-36 153.7 90 75.6
Sed0028101 Sechium edule HOM05D002272 ORTHO05D005405 6.8e-36 153.7 90 76.7
Aqoxy5G02803 Aquilegia oxysepala HOM05D002272 ORTHO05D005405 8.9e-36 153.3 90 77.8
Sed0025255 Sechium edule HOM05D002272 ORTHO05D005405 8.9e-36 153.3 90 77.8
Potri.008G207000 Populus trichocarpa HOM05D002272 ORTHO05D005405 1.5e-35 152.5 90 78.9
Potri.010G002300 Populus trichocarpa HOM05D002272 ORTHO05D005405 3.4e-35 151.4 90 78.9
Duzib212G0306 Durio zibethinus HOM05D002272 ORTHO05D005405 4.4e-35 151.0 90 81.1
Nitab4.5_0002322g0100 Nicotiana tabacum HOM05D002272 ORTHO05D005405 4.4e-35 151.0 89 79.8
Sabra10G0001800 Salix brachista HOM05D002272 ORTHO05D005405 4.4e-35 151.0 90 78.9
ATR0796G018 Amborella trichopoda HOM05D002272 ORTHO05D005405 5.8e-35 150.6 90 80.0
Manes.02G178300 Manihot esculenta HOM05D002272 ORTHO05D005405 9.8e-35 149.8 90 78.9
PSO541G1920 Papaver somniferum HOM05D002272 ORTHO05D005405 1.7e-34 149.1 90 76.7
Rhsim10G0078600 Rhododendron simsii HOM05D002272 ORTHO05D005405 2.9e-34 148.3 81 84.0
Atru.chr4.3151 Acer truncatum HOM05D002272 ORTHO05D005405 6.4e-34 147.1 90 75.6
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 6.4e-34 147.1 80 83.8
Oeu037631.1 Olea europaea HOM05D002272 ORTHO05D005405 6.4e-34 147.1 78 88.5
ClCG05G006870 Citrullus lanatus HOM05D002272 ORTHO05D005405 1.4e-33 146.0 90 73.3
SEGI_24146 Sequoiadendron giganteum HOM05D002272 ORTHO05D005405 1.4e-33 146.0 86 75.6
Sopen01g021790 Solanum pennellii HOM05D002272 ORTHO05D005405 1.4e-33 146.0 93 75.3
CsaV3_3G015540 Cucumis sativus L. HOM05D002272 ORTHO05D005405 1.6e-32 142.5 91 73.6
Mapoly0162s0018 Marchantia polymorpha HOM05D002272 ORTHO05D005405 2.7e-32 141.7 90 67.8
MELO3C006752.2 Cucumis melo HOM05D002272 ORTHO05D005405 1.1e-30 136.3 91 69.2
Actinidia01065 Actinidia chinensis HOM05D002272 ORTHO05D005405 4.3e-30 134.4 67 89.6
Os01g0251100 Oryza sativa ssp. japonica HOM05D002272 ORTHO05D005405 2.1e-29 132.1 90 68.9
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 2.1e-29 132.1 84 71.4
BcaC09g48707 Brassica carinata HOM05D002272 ORTHO05D005405 1.2e-27 126.3 71 80.3
Pp3c23_18210 Physcomitrium patens HOM05D002272 ORTHO05D005405 1.7e-26 122.5 86 61.6
SMO119G0282 Selaginella moellendorffii HOM05D002272 ORTHO05D005405 1.9e-25 119.0 85 62.4
BcaNung06481 Brassica carinata HOM05D002272 ORTHO05D005405 2.1e-24 115.5 66 78.8
Sabra08G0150200 Salix brachista HOM05D002272 ORTHO05D005405 5.1e-23 110.9 58 86.2
CAN.G407.30 Capsicum annuum HOM05D002272 ORTHO05D005405 4.3e-22 107.8 60 83.3
PGSC0003DMG402013065 Solanum tuberosum HOM05D002272 ORTHO05D005405 1.1e-20 103.2 59 81.4
CBR_g27892 Chara braunii HOM05D002272 ORTHO05D005405 1.4e-20 102.8 86 57.0
C03p48820 Brassica napus HOM05D002272 ORTHO05D005405 5.2e-20 100.9 59 79.7
BolC3t17164H Brassica oleracea HOM05D002272 ORTHO05D005405 5.2e-20 100.9 59 79.7
C03p48850 Brassica napus HOM05D002272 ORTHO05D005405 1.2e-19 99.8 61 73.8
BcaC01g03762 Brassica carinata HOM05D002272 ORTHO05D005405 4.4e-19 97.8 75 65.3
BolC1t04644H Brassica oleracea HOM05D002272 ORTHO05D040789 1.7e-18 95.9 54 77.8
C01p46730 Brassica napus HOM05D002272 ORTHO05D040789 3.2e-17 91.7 52 78.8
Cre01.g022250 Chlamydomonas reinhardtii HOM05D002272 ORTHO05D005405 2.9e-10 68.6 70 47.1
arahy.Tifrunner.gnm1.ann1.IDQN4N Arachis hypogaea HOM05D002272 ORTHO05D005405 6.4e-10 67.4 33 90.9
Nitab4.5_0006648g0050 Nicotiana tabacum HOM05D002272 ORTHO05D005405 8.4e-10 67.0 32 90.6
MCO04G432 Micromonas commoda HOM05D002272 ORTHO05D005405 1.4e-09 66.2 57 52.6
Gohir.A02G058500 Gossypium hirsutum HOM05D002272 ORTHO05D005405 4.2e-09 64.7 32 84.4
arahy.Tifrunner.gnm1.ann1.VQU8DB Arachis hypogaea HOM05D002272 ORTHO05D005405 7.1e-09 63.9 31 90.3
PRCOL_00001976 Prasinoderma coloniale HOM05D002272 ORTHO05D005405 2.1e-08 62.4 76 46.1
Zm00001eb333790 Zea mays HOM05D002272 ORTHO05D005405 6.0e-08 60.8 33 78.8


User provided reference genes

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