Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 2.0e-166 589.0 283 100.0
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 3.8e-125 451.8 259 80.7
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 1.5e-118 429.9 279 73.1
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 3.8e-117 425.2 270 74.4
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 1.1e-116 423.7 270 74.4
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.9e-116 422.9 272 72.8
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 3.0e-114 415.6 277 72.6
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 3.9e-114 415.2 273 72.2
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 8.8e-114 414.1 271 73.8
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 3.3e-113 412.1 269 72.1
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 3.3e-113 412.1 276 71.4
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 4.4e-113 411.8 279 72.0
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 7.4e-113 411.0 267 71.9
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.7e-112 409.8 272 71.3
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 2.2e-112 409.5 273 70.0
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 4.8e-112 408.3 280 70.7
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.4e-111 406.8 256 73.8
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.4e-111 406.8 254 74.0
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 1.4e-111 406.8 266 71.4
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 4.5e-110 401.7 273 68.5
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 3.8e-109 398.7 275 69.1
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 1.1e-108 397.1 272 69.5
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 7.2e-108 394.4 273 68.5
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 9.4e-108 394.0 284 66.5
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 1.6e-107 393.3 276 67.8
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 4.7e-107 391.7 266 67.7
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 1.4e-106 390.2 277 69.0
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 1.8e-106 389.8 272 68.4
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.8e-106 389.8 274 66.8
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 8.8e-106 387.5 271 68.6
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 8.8e-106 387.5 272 68.4
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 8.8e-106 387.5 275 68.0
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.2e-105 387.1 272 68.0
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.2e-105 387.1 280 67.5
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 2.0e-105 386.3 270 68.1
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 7.5e-105 384.4 277 65.3
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 7.5e-105 384.4 262 69.1
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.3e-104 383.6 279 65.2
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 4.8e-104 381.7 276 67.4
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 1.8e-103 379.8 255 68.2
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 4.1e-103 378.6 261 68.2
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 7.0e-103 377.9 229 76.4
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 7.0e-103 377.9 271 65.7
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.0e-101 374.0 282 63.8
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 1.7e-101 373.2 282 62.8
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 2.2e-101 372.9 256 68.8
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 2.9e-101 372.5 273 64.5
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 3.8e-101 372.1 269 66.2
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 5.0e-101 371.7 276 65.6
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 5.0e-101 371.7 268 66.0
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 6.5e-101 371.3 268 66.0
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 8.5e-101 370.9 267 63.3
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 2.5e-100 369.4 256 66.4
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 7.2e-100 367.9 253 68.0
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 7.2e-100 367.9 270 63.3
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 7.2e-100 367.9 271 66.8
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.2e-99 367.1 276 64.5
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 2.1e-99 366.3 255 67.1
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 2.1e-99 366.3 264 64.8
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 2.7e-99 365.9 270 64.8
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 3.6e-99 365.5 275 63.6
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 6.1e-99 364.8 268 66.8
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 6.1e-99 364.8 271 64.9
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 1.0e-98 364.0 274 64.6
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 1.4e-98 363.6 273 63.4
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.8e-98 363.2 275 64.0
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 3.0e-98 362.5 271 62.4
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 3.4e-97 359.0 271 64.2
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 3.4e-97 359.0 263 64.3
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 5.7e-97 358.2 253 66.8
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 1.3e-96 357.1 244 68.0
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 1.7e-96 356.7 269 63.6
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 2.2e-96 356.3 244 68.0
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 2.2e-96 356.3 271 63.8
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 1.4e-95 353.6 249 66.7
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 5.4e-95 351.7 266 64.7
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 9.1e-95 350.9 252 64.3
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 3.8e-93 345.5 265 63.0
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 6.5e-93 344.7 273 60.1
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 1.1e-92 344.0 266 62.0
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 1.9e-92 343.2 267 60.7
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 1.9e-92 343.2 276 61.2
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 3.3e-92 342.4 282 57.8
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 3.6e-91 339.0 281 58.4
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 1.0e-90 337.4 259 61.4
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 9.8e-89 330.9 244 65.6
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 2.8e-88 329.3 261 58.6
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 2.4e-87 326.2 293 55.3
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 9.5e-84 314.3 270 56.3
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 2.3e-82 309.7 255 57.6
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 8.3e-80 301.2 255 54.9
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 6.6e-77 291.6 213 62.9
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 1.1e-76 290.8 262 51.5
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 9.8e-73 277.7 237 56.1
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 4.6e-70 268.9 287 49.1
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.7e-69 266.9 284 46.5
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 3.0e-69 266.2 288 46.2
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 3.0e-69 266.2 288 46.2
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 3.0e-69 266.2 284 47.2
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 3.9e-69 265.8 287 48.1
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 5.0e-69 265.4 279 48.4
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 5.0e-69 265.4 288 47.2
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 6.6e-69 265.0 284 46.8
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 8.6e-69 264.6 285 47.7
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 4.3e-68 262.3 295 46.1
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 5.6e-68 261.9 296 46.6
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 9.5e-68 261.2 289 47.4
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 6.2e-67 258.5 288 46.9
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 6.2e-67 258.5 217 61.3
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 8.9e-66 254.6 284 47.2
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 1.3e-64 250.8 258 48.1
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 1.7e-64 250.4 271 50.2
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.7e-64 249.2 283 48.1
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 1.7e-61 240.4 255 47.1
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 6.6e-61 238.4 230 47.8
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.1e-50 204.5 250 43.2
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.2e-48 196.8 198 47.0
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 2.4e-47 193.4 240 42.1
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 1.6e-46 190.7 266 39.5
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 1.7e-45 187.2 245 38.0
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 5.3e-42 175.6 186 45.2
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 1.2e-38 164.5 181 49.2
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 1.8e-37 160.6 255 39.6
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 1.8e-37 160.6 200 43.0
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 3.9e-37 159.5 201 43.3
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 6.7e-37 158.7 179 45.8
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 1.5e-36 157.5 175 44.6
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 2.5e-36 156.8 222 41.4
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 3.3e-36 156.4 175 45.1
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 2.1e-35 153.7 175 43.4
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 2.1e-35 153.7 226 40.7
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 2.8e-35 153.3 201 43.3
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 7.1e-31 138.7 207 39.6
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 2.7e-30 136.7 283 35.0
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 1.3e-29 134.4 139 48.2
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.3e-29 133.7 87 69.0
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.9e-29 132.9 149 42.3
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 8.2e-27 125.2 139 47.5
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 1.7e-24 117.5 170 37.1
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-23 114.4 201 36.3
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-23 114.4 201 36.3
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 5.5e-23 112.5 190 36.3
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 1.8e-18 97.4 93 52.7
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 1.2e-17 94.7 67 64.2
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 6.5e-16 89.0 80 48.8
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 6.5e-16 89.0 80 48.8
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 8.5e-16 88.6 89 51.7
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 5.5e-15 85.9 116 42.2
Cre06.g258000 Chlamydomonas reinhardtii HOM05D004840 ORTHO05D005751 7.2e-07 58.9 151 27.8


User provided reference genes

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