Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 2.1e-266 921.8 465 100.0
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 2.9e-223 778.5 503 82.3
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 3.8e-223 778.1 503 82.3
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 9.1e-193 677.2 497 71.0
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.9e-186 655.6 561 64.2
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.5e-174 616.7 564 62.1
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 7.3e-174 614.4 532 63.5
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 7.3e-174 614.4 553 61.5
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 6.2e-173 611.3 564 61.9
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 2.3e-172 609.4 529 64.3
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 8.9e-172 607.4 560 60.9
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 9.8e-171 604.0 564 60.1
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.3e-170 603.6 571 60.2
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 2.9e-170 602.4 561 59.7
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 6.4e-170 601.3 559 59.9
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 6.4e-170 601.3 559 60.1
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 1.9e-169 599.7 552 60.0
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 4.1e-169 598.6 564 59.8
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 5.4e-169 598.2 559 60.3
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.2e-168 597.0 556 60.4
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 1.6e-168 596.7 463 68.0
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 3.5e-168 595.5 555 61.1
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 2.3e-167 592.8 571 59.0
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.1e-164 583.9 563 59.9
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 5.2e-164 581.6 496 65.5
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 1.5e-163 580.1 573 59.0
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.1e-161 573.9 556 60.1
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 7.1e-161 571.2 560 58.9
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.7e-160 569.3 558 57.9
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.0e-159 567.4 572 57.5
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 3.9e-159 565.5 560 55.9
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.1e-158 563.9 550 58.5
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.5e-158 563.5 565 56.8
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 5.6e-158 561.6 557 56.2
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 7.3e-158 561.2 568 56.2
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 9.6e-158 560.8 572 57.0
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.6e-157 560.1 553 58.0
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 8.1e-157 557.8 564 56.6
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.4e-156 557.0 559 57.1
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 4.4e-155 552.0 550 57.5
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.7e-154 550.1 564 56.2
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 6.4e-154 548.1 564 55.9
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.9e-153 546.6 544 57.7
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.2e-153 545.8 564 56.2
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 4.2e-153 545.4 549 54.8
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 3.5e-152 542.3 571 56.4
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.0e-151 540.8 571 56.0
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 5.1e-151 538.5 562 55.0
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 5.6e-150 535.0 561 54.2
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 9.6e-150 534.3 565 54.9
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.6e-149 533.5 565 55.2
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 1.6e-149 533.5 565 54.7
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 1.6e-149 533.5 565 54.7
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 2.1e-149 533.1 427 67.2
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 2.1e-149 533.1 549 54.3
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 3.6e-149 532.3 565 55.0
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 4.8e-149 531.9 567 55.7
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.1e-148 530.8 559 53.7
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.8e-148 530.0 555 54.1
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 4.0e-148 528.9 563 53.8
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.9e-148 528.1 555 54.1
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 9.0e-148 527.7 561 55.3
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 7.6e-147 524.6 566 54.9
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.9e-147 524.2 561 54.0
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.9e-147 524.2 561 54.0
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 8.4e-146 521.2 558 55.0
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 8.4e-146 521.2 570 54.0
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 3.2e-145 519.2 544 54.6
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 4.2e-145 518.8 572 53.1
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 7.1e-145 518.1 585 52.3
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 2.1e-144 516.5 565 54.3
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 2.1e-144 516.5 566 52.8
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.3e-143 513.8 567 52.0
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 8.7e-143 511.1 566 53.2
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 3.3e-142 509.2 574 52.1
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 4.3e-142 508.8 528 54.7
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 5.6e-142 508.4 540 55.2
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 9.6e-142 507.7 556 53.1
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 9.6e-142 507.7 565 54.2
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 2.1e-141 506.5 565 52.9
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 2.8e-141 506.1 565 52.2
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 2.4e-140 503.1 512 56.8
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.4e-140 503.1 559 51.9
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 5.3e-140 501.9 568 51.9
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 3.4e-139 499.2 550 51.6
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 5.8e-139 498.4 556 52.7
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 5.8e-139 498.4 556 52.7
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 7.6e-139 498.0 556 52.2
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 7.6e-139 498.0 556 52.7
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 9.9e-139 497.7 519 55.3
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 3.8e-138 495.7 561 51.7
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-137 493.8 550 52.4
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 3.2e-137 492.7 532 54.9
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 2.1e-136 490.0 562 50.9
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.0e-135 487.6 554 51.1
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 1.3e-133 480.7 561 51.0
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 3.4e-131 472.6 569 49.7
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 8.4e-130 468.0 563 48.8
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 4.2e-129 465.7 555 49.2
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 4.2e-129 465.7 557 47.9
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 7.1e-129 464.9 558 48.6
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 9.3e-129 464.5 555 48.3
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 1.6e-128 463.8 561 49.0
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.5e-128 462.6 474 55.3
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 2.5e-126 456.4 563 49.6
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 2.8e-125 453.0 549 47.9
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 6.9e-124 448.4 457 54.7
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 3.4e-123 446.0 552 47.8
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.0e-122 444.5 554 48.7
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.0e-122 444.5 559 46.2
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.7e-122 443.7 413 58.4
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-121 441.0 527 50.7
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 4.6e-120 435.6 412 60.2
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 4.6e-120 435.6 566 47.0
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.8e-117 425.6 530 49.4
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.2e-113 412.9 513 49.7
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 7.9e-112 408.3 402 56.0
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.0e-111 407.9 339 67.6
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 2.3e-111 406.8 567 45.7
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 1.1e-110 404.4 528 46.2
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 5.7e-110 402.1 579 42.1
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.6e-104 384.0 385 54.3
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.7e-90 337.4 558 38.7
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.3e-87 327.0 520 40.2
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 8.8e-87 325.1 389 50.4
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.2e-86 324.7 302 59.9
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.1e-80 302.4 291 57.4
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 5.2e-79 299.3 325 56.9
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.5e-78 297.7 478 36.4
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 5.7e-78 295.8 456 42.5
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 2.0e-67 260.8 331 48.3
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.5e-62 244.6 285 50.9
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.7e-61 241.1 179 74.3
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 6.4e-61 239.2 265 56.2
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 7.8e-59 232.3 335 39.4
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 1.5e-57 228.0 207 62.8
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 1.4e-52 211.5 190 57.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.1e-44 185.3 210 45.7
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 2.3e-42 177.6 118 70.3
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.8e-32 143.3 83 79.5
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 2.6e-30 137.5 83 74.7
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 2.2e-29 134.4 83 73.5
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.9e-26 123.6 79 70.9
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 2.0e-22 111.3 247 38.5
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 7.9e-19 99.4 75 60.0
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.3e-18 98.6 61 73.8
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 3.9e-18 97.1 61 72.1
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 5.1e-18 96.7 61 72.1
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 5.6e-17 93.2 127 46.5
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 1.6e-16 91.7 73 58.9
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.0e-14 84.7 78 59.0
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 7.6e-14 82.8 51 72.5
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.0e-10 70.9 125 41.6


User provided reference genes

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