Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 0.0e+00 1127.5 568 100.0
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 5.0e-233 811.2 626 72.4
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 8.9e-190 667.5 649 58.9
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 1.7e-188 663.3 637 59.7
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 8.3e-188 661.0 659 58.9
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 7.8e-186 654.4 637 61.1
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 1.3e-185 653.7 656 58.4
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 1.9e-184 649.8 625 60.2
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 4.7e-183 645.2 628 58.6
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 8.0e-183 644.4 625 59.8
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 1.4e-182 643.7 627 59.5
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.4e-182 643.7 643 58.5
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 2.3e-182 642.9 635 58.9
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 2.3e-182 642.9 651 57.5
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 1.5e-181 640.2 628 57.8
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 5.8e-181 638.3 637 58.2
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 7.5e-181 637.9 636 57.9
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 7.5e-181 637.9 636 57.9
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 1.7e-180 636.7 626 59.1
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 3.7e-180 635.6 628 57.6
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.4e-179 633.6 632 58.5
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 3.2e-179 632.5 628 57.8
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 5.4e-179 631.7 624 58.8
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 9.2e-179 630.9 625 59.5
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.6e-178 630.2 629 59.1
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.6e-178 630.2 633 58.3
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 4.6e-178 628.6 635 57.0
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 7.8e-178 627.9 625 59.0
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 1.7e-177 626.7 631 59.1
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.3e-177 626.3 624 58.5
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.0e-177 625.9 632 57.9
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.9e-177 625.5 622 58.2
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 5.0e-177 625.2 622 58.2
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 8.6e-177 624.4 650 56.8
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 1.5e-176 623.6 648 57.6
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 2.5e-176 622.9 624 59.3
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 2.5e-176 622.9 623 59.7
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 3.3e-176 622.5 632 57.1
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 7.3e-176 621.3 629 57.7
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 7.3e-176 621.3 632 57.4
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.2e-175 620.5 640 56.2
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 1.6e-175 620.2 575 60.5
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.1e-175 619.8 622 58.0
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.8e-175 619.4 653 55.3
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.6e-175 619.0 622 57.9
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 4.7e-175 618.6 649 57.2
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 6.2e-175 618.2 650 57.8
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 1.8e-174 616.7 627 57.6
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 4.0e-174 615.5 629 56.9
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 4.0e-174 615.5 623 58.1
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 8.9e-174 614.4 629 57.4
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.0e-173 613.2 624 57.1
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 3.4e-173 612.5 639 56.8
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 2.9e-172 609.4 650 55.1
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 4.9e-172 608.6 651 54.7
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 1.4e-171 607.1 640 56.6
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 3.2e-171 605.9 641 54.9
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 1.2e-170 604.0 633 57.2
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 1.6e-170 603.6 629 56.4
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 2.1e-170 603.2 622 58.2
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 2.1e-170 603.2 623 57.8
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 4.6e-170 602.1 628 56.2
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 3.0e-169 599.4 634 57.3
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 8.6e-169 597.8 614 56.5
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 4.3e-168 595.5 638 55.0
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 7.3e-168 594.7 633 58.3
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 9.5e-168 594.3 624 56.9
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 1.2e-167 594.0 625 57.0
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 1.2e-167 594.0 649 55.0
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 1.1e-166 590.9 759 48.4
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 1.8e-166 590.1 662 55.1
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 6.8e-166 588.2 624 56.6
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 6.8e-166 588.2 621 55.1
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 1.5e-165 587.0 621 57.5
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 2.9e-164 582.8 632 55.4
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 3.7e-164 582.4 627 53.7
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 6.4e-164 581.6 641 53.7
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 8.3e-164 581.3 625 56.8
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 2.4e-163 579.7 629 56.1
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 4.1e-163 578.9 625 56.6
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 7.1e-163 578.2 628 54.0
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 1.2e-162 577.4 627 53.6
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 3.5e-162 575.9 646 52.9
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.3e-161 573.9 599 56.6
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 1.3e-161 573.9 616 54.7
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 5.1e-161 572.0 608 53.3
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 1.1e-160 570.9 608 53.1
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 1.1e-160 570.9 608 53.1
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 1.5e-160 570.5 630 52.9
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 1.9e-160 570.1 649 53.6
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 5.6e-160 568.5 620 52.4
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 8.1e-159 564.7 624 53.2
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 8.1e-159 564.7 616 52.4
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 1.8e-158 563.5 661 52.8
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 2.6e-157 559.7 575 56.3
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 1.3e-156 557.4 578 54.8
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 2.9e-156 556.2 624 52.9
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 6.4e-156 555.1 507 60.2
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 3.2e-155 552.7 628 53.7
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 5.4e-155 552.0 664 52.6
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 9.2e-155 551.2 509 59.9
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 7.8e-154 548.1 596 52.7
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 1.0e-153 547.7 639 54.0
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.9e-153 545.8 625 54.9
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 5.1e-153 545.4 632 52.4
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 6.6e-153 545.0 631 52.0
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 8.7e-153 544.7 631 52.5
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 1.4e-150 537.3 619 50.9
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.8e-150 537.0 488 59.8
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.4e-149 532.7 619 53.6
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 3.8e-148 529.3 301 85.0
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 1.1e-144 517.7 641 50.2
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 1.3e-140 504.2 296 82.1
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 2.2e-140 503.4 304 80.3
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 9.3e-139 498.0 602 48.2
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.2e-138 497.7 297 79.5
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 1.6e-138 497.3 342 73.1
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 3.5e-138 496.1 297 80.5
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 3.5e-138 496.1 297 80.5
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 7.1e-131 471.9 652 48.2
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 5.1e-129 465.7 300 73.7
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 1.1e-126 458.0 551 50.1
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 3.4e-125 453.0 524 50.2
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 1.7e-124 450.7 298 72.5
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 2.9e-124 449.9 652 43.1
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 6.5e-124 448.7 294 73.5
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 2.1e-122 443.7 298 73.2
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 1.8e-121 440.7 641 44.6
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 3.1e-118 429.9 639 42.7
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 8.8e-113 411.8 679 40.1
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 1.8e-102 377.5 251 76.1
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 2.4e-102 377.1 255 71.4
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 2.4e-102 377.1 255 71.4
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 5.9e-101 372.5 553 41.4
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 8.6e-52 209.1 320 38.4
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 9.2e-46 189.1 110 82.7
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 1.4e-38 165.2 178 59.0
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 1.0e-36 159.1 178 52.8
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 9.9e-32 142.5 148 60.8
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.9e-31 141.0 87 78.2
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 1.4e-30 138.7 206 44.7
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 1.1e-25 122.5 162 48.1
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 6.9e-25 119.8 169 50.9
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 1.8e-20 105.1 282 32.3
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.8e-17 95.1 149 47.0
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.8e-17 95.1 295 30.2
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 4.2e-14 84.0 110 50.9
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 1.0e-12 79.3 144 42.4
PGSC0003DMG401024092 Solanum tuberosum HOM05D004716 ORTHO05D005646 6.2e-10 70.1 167 38.9
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 8.2e-10 69.7 152 38.8
Ca_26438_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 9.3e-06 56.2 141 39.0


User provided reference genes

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