Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 4.6e-222 774.2 388 100.0
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 7.8e-137 491.1 354 69.2
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 2.5e-135 486.1 313 74.8
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 2.5e-135 486.1 346 67.9
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 1.2e-134 483.8 376 64.9
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 1.6e-134 483.4 370 65.4
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 6.8e-133 478.0 387 61.8
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 1.2e-132 477.2 380 63.7
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 1.7e-131 473.4 387 62.0
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 2.9e-131 472.6 335 69.6
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 4.1e-130 468.8 366 62.3
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 7.0e-130 468.0 381 59.8
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.0e-128 464.2 328 68.6
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 1.7e-128 463.4 381 61.2
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 3.0e-128 462.6 383 60.8
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 1.9e-127 459.9 332 68.7
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 3.3e-127 459.1 381 59.1
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 7.3e-127 458.0 381 58.5
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 6.2e-126 454.9 372 60.5
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 2.3e-125 453.0 383 59.5
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 4.4e-124 448.7 385 57.4
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 1.3e-123 447.2 354 63.6
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 1.3e-123 447.2 381 56.7
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 1.3e-123 447.2 373 59.2
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 1.7e-123 446.8 373 59.2
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 2.2e-123 446.4 373 59.2
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 1.9e-122 443.4 370 59.5
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 5.4e-122 441.8 370 60.3
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 7.0e-122 441.4 370 60.5
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 6.0e-121 438.3 369 56.6
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 1.5e-119 433.7 345 62.0
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 4.3e-119 432.2 354 58.5
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 9.5e-119 431.0 376 58.8
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 1.2e-118 430.6 340 61.5
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 1.6e-118 430.3 334 60.2
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 2.1e-118 429.9 384 56.2
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 1.2e-116 424.1 388 56.2
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 1.5e-116 423.7 373 56.8
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 2.0e-116 423.3 382 55.5
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 2.0e-116 423.3 354 57.1
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 1.7e-115 420.2 366 57.1
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 6.4e-115 418.3 314 63.4
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 6.4e-115 418.3 333 61.0
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.9e-114 416.8 284 71.5
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 7.1e-114 414.8 372 53.8
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 7.1e-114 414.8 367 57.8
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 1.2e-113 414.1 334 59.0
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 1.2e-113 414.1 367 56.1
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.6e-113 413.7 370 54.3
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 4.6e-113 412.1 369 54.7
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 4.6e-113 412.1 361 54.6
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 6.0e-113 411.8 369 54.7
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 7.8e-113 411.4 359 57.1
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 1.0e-112 411.0 369 54.2
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 1.0e-112 411.0 369 54.5
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.3e-112 410.6 359 56.8
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 1.7e-112 410.2 369 53.9
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 3.0e-112 409.5 335 60.9
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 6.6e-112 408.3 359 57.1
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 6.6e-112 408.3 323 61.3
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 4.3e-111 405.6 369 52.6
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 1.2e-110 404.1 369 53.7
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 2.1e-110 403.3 369 53.4
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 1.8e-109 400.2 369 53.1
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 2.4e-109 399.8 369 53.1
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 2.4e-109 399.8 298 65.4
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 3.1e-109 399.4 336 58.9
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 4.0e-109 399.1 369 53.1
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 4.4e-108 395.6 343 58.0
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 1.3e-107 394.0 343 57.4
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 8.4e-107 391.3 328 60.7
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 4.2e-106 389.0 352 56.0
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 7.1e-106 388.3 361 51.8
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 9.2e-106 387.9 385 53.8
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 8.7e-104 381.3 334 54.5
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 4.3e-103 379.0 381 51.7
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 9.6e-103 377.9 335 56.4
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 1.3e-102 377.5 369 52.3
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 1.3e-102 377.5 381 50.7
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 5.3e-101 372.1 417 48.4
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 9.0e-101 371.3 369 49.3
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 7.6e-100 368.2 374 51.9
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 2.9e-99 366.3 355 54.1
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 2.9e-99 366.3 377 51.5
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 6.0e-97 358.6 369 48.0
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 5.1e-96 355.5 246 68.7
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 6.2e-94 348.6 327 54.7
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 2.4e-90 336.7 331 53.5
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 4.2e-90 335.9 246 63.0
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 1.2e-89 334.3 232 67.2
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 1.3e-88 330.9 333 49.8
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 3.0e-88 329.7 372 48.4
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 7.6e-84 315.1 303 55.1
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 4.9e-83 312.4 333 47.4
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 4.6e-81 305.8 217 68.2
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 1.3e-80 304.3 366 46.2
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 4.8e-78 295.8 336 49.7
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 5.3e-77 292.4 290 51.7
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 1.9e-74 283.9 299 48.2
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 6.7e-72 275.4 205 65.9
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 5.7e-71 272.3 248 54.8
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 8.5e-67 258.5 332 45.5
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 7.2e-58 228.8 175 65.7
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 6.7e-48 195.7 182 54.9
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 1.5e-42 177.9 167 54.5
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 2.7e-41 173.7 232 41.8
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 4.7e-41 172.9 199 47.7
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 1.2e-36 158.3 167 51.5
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.8e-32 144.4 210 41.4
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 7.0e-21 105.9 132 43.2
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 2.3e-19 100.9 244 30.7
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 1.0e-16 92.0 241 32.0
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.2e-15 88.6 176 35.2
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 1.3e-14 85.1 195 30.3
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.7e-14 84.7 200 33.5
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 1.9e-13 81.3 198 31.8
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 9.2e-13 79.0 188 31.4
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 1.2e-12 78.6 196 32.7
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 4.6e-12 76.6 188 29.3
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 7.8e-12 75.9 183 33.9
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 7.8e-12 75.9 199 32.2
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 7.8e-12 75.9 196 30.6
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 7.8e-12 75.9 187 31.0
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 7.8e-12 75.9 201 29.4
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 1.0e-11 75.5 204 29.4
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 1.7e-11 74.7 183 33.3
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 5.0e-11 73.2 180 34.4
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 5.0e-11 73.2 193 31.1
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 1.9e-10 71.2 190 28.9
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 1.9e-10 71.2 190 28.4
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 3.3e-10 70.5 185 28.6
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 9.5e-10 68.9 201 26.9
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 9.5e-10 68.9 201 26.9
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 1.2e-09 68.6 184 30.4
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 1.6e-09 68.2 161 31.1
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 4.7e-09 66.6 156 31.4
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 8.1e-09 65.9 154 31.8
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 2.3e-08 64.3 153 30.7
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 6.8e-08 62.8 158 29.7
THA.LOC104818297 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 8.9e-08 62.4 284 23.2
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 2.0e-07 61.2 195 26.7
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 1.7e-06 58.2 41 61.0
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 4.9e-06 56.6 165 25.5


User provided reference genes

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