Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 7.5e-308 1059.7 529 100.0
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 2.5e-202 709.1 517 69.2
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 1.1e-199 700.3 520 70.4
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 1.5e-199 699.9 519 67.4
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 2.8e-198 695.7 491 70.3
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 3.7e-198 695.3 479 72.0
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.8e-195 685.3 493 69.4
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 8.5e-195 684.1 488 69.3
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 1.5e-194 683.3 474 70.0
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 6.1e-193 677.9 474 69.0
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 1.4e-192 676.8 490 67.1
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 1.8e-192 676.4 524 67.0
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 1.8e-192 676.4 490 67.1
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 2.3e-192 676.0 526 66.9
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 5.2e-192 674.9 523 65.4
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 1.2e-191 673.7 516 67.1
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 1.5e-191 673.3 525 65.7
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 9.7e-191 670.6 517 65.8
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 1.3e-190 670.2 477 68.6
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 1.7e-190 669.8 468 68.6
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 2.2e-190 669.5 514 66.3
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 2.2e-190 669.5 477 69.4
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 2.2e-190 669.5 499 66.5
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 2.8e-190 669.1 512 66.4
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 2.8e-190 669.1 493 68.6
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 3.7e-190 668.7 521 64.7
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 6.3e-190 667.9 499 66.5
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 1.8e-189 666.4 524 65.6
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 2.4e-189 666.0 527 64.9
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 2.4e-189 666.0 537 64.6
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 3.1e-189 665.6 445 73.3
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 2.0e-188 662.9 513 64.9
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 1.3e-187 660.2 509 65.4
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 2.9e-187 659.1 502 65.9
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 3.8e-187 658.7 470 69.1
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 3.8e-187 658.7 467 68.7
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 3.8e-187 658.7 477 69.0
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 2.5e-186 656.0 511 66.3
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 7.2e-186 654.4 503 66.4
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 6.1e-185 651.4 532 65.8
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 8.0e-185 651.0 514 64.4
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 1.0e-184 650.6 475 69.1
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 4.0e-184 648.7 503 65.2
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 6.8e-184 647.9 499 66.3
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 4.4e-183 645.2 524 63.2
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 1.7e-182 643.3 471 68.8
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 2.8e-182 642.5 471 68.6
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 1.1e-181 640.6 465 67.3
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 1.1e-181 640.6 534 62.4
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 2.4e-181 639.4 479 66.0
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 2.4e-181 639.4 469 67.8
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 4.1e-181 638.6 476 66.2
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 5.4e-181 638.3 463 67.4
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 2.0e-180 636.3 486 65.8
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 2.0e-180 636.3 491 65.2
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 1.0e-179 634.0 539 60.9
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 1.1e-178 630.6 528 62.9
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 1.0e-176 624.0 511 61.6
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 1.8e-176 623.2 504 62.3
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 1.8e-176 623.2 511 62.4
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 2.3e-176 622.9 467 66.2
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 5.2e-176 621.7 485 63.9
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 1.5e-175 620.2 483 63.8
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 2.6e-175 619.4 515 61.9
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 2.6e-175 619.4 511 62.2
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 4.4e-175 618.6 504 61.7
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 4.4e-175 618.6 481 64.2
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 7.0e-173 611.3 507 61.5
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 7.0e-173 611.3 531 59.7
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 1.6e-172 610.1 509 61.9
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 2.1e-169 599.7 461 67.7
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 2.8e-169 599.4 479 63.7
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.8e-169 599.4 538 58.6
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 4.7e-169 598.6 518 61.2
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 6.1e-169 598.2 533 58.9
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 1.2e-167 594.0 505 60.6
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 3.4e-167 592.4 459 66.4
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 3.3e-162 575.9 506 58.9
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 6.2e-161 571.6 420 68.1
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.0e-159 566.6 468 60.5
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 9.8e-159 564.3 412 68.0
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 2.4e-157 559.7 465 61.1
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 4.1e-157 558.9 474 58.4
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 8.1e-153 544.7 454 59.5
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 5.2e-152 542.0 472 57.6
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 3.4e-151 539.3 528 55.9
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 2.4e-144 516.5 490 55.7
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 2.4e-128 463.4 470 49.6
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 6.4e-126 455.3 346 67.6
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 1.1e-125 454.5 471 53.1
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 2.4e-125 453.4 458 48.7
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 2.5e-122 443.4 322 69.6
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 3.1e-120 436.4 448 48.7
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.5e-119 434.1 367 62.1
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 2.6e-119 433.3 328 68.3
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 1.8e-112 410.6 351 61.8
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 2.2e-105 387.1 416 51.2
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 5.5e-101 372.5 378 48.4
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 1.8e-96 357.5 305 59.7
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 5.9e-95 352.4 249 67.1
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 3.8e-94 349.7 287 64.8
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 4.5e-87 326.2 362 46.4
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 3.2e-85 320.1 277 60.3
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 2.0e-82 310.8 306 56.5
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 3.3e-82 310.1 216 69.9
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.7e-78 297.7 392 44.1
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 3.7e-65 253.4 525 34.9
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 7.5e-58 229.2 228 55.7
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 5.0e-54 216.5 508 31.7
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 1.6e-52 211.5 126 69.8
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 3.2e-40 170.6 130 63.8
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 9.5e-29 132.5 461 28.0
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 1.7e-25 121.7 100 63.0
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 7.1e-24 116.3 131 51.9
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 6.6e-22 109.8 88 61.4
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 1.8e-19 101.7 73 63.0
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 6.9e-19 99.8 298 27.2
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 2.9e-17 94.4 118 40.7
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 2.1e-15 88.2 181 29.8
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 3.0e-14 84.3 64 59.4
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 5.6e-13 80.1 92 46.7
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.4e-11 75.5 78 55.1
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.4e-11 75.5 88 45.5
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 2.4e-11 74.7 42 71.4
arahy.Tifrunner.gnm1.ann1.3FLP3Q Arachis hypogaea HOM05D005888 ORTHO05D007791 6.0e-07 60.1 36 69.4
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 8.7e-06 56.2 37 59.5


User provided reference genes

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