Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu011579.3 Olea europaea HOM05D005797 ORTHO05D006479 1.7e-279 965.3 475 100.0
MSTRG.9312 Avicennia marina HOM05D005797 ORTHO05D006479 2.8e-35 154.1 288 36.1
CSS0032554 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 1.2e-30 138.7 535 27.3
TAR629G0979 Trochodendron aralioides HOM05D005797 ORTHO05D006479 1.2e-30 138.7 542 25.6
CSS0021207 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 2.0e-30 137.9 535 27.7
CSS0028554 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 8.6e-29 132.5 547 26.1
GSVIVG01007552001 Vitis vinifera HOM05D005797 ORTHO05D006479 8.6e-29 132.5 551 24.9
Oeu011581.1 Olea europaea HOM05D005797 ORTHO05D006479 2.1e-27 127.9 137 48.9
Dinv38477 Davidia involucrata HOM05D005797 ORTHO05D006479 6.1e-27 126.3 300 29.7
AUR62001271 Chenopodium quinoa HOM05D005797 ORTHO05D006479 3.7e-24 117.1 500 25.4
Eucgr.K02760 Eucalyptus grandis HOM05D005797 ORTHO05D006479 3.7e-24 117.1 492 24.8
AUR62025735 Chenopodium quinoa HOM05D005797 ORTHO05D006479 6.4e-24 116.3 526 25.7
Prupe.5G157600 Prunus persica HOM05D005797 ORTHO05D006479 4.1e-23 113.6 285 28.1
CiPaw.11G012700 Carya illinoinensis HOM05D005797 ORTHO05D006479 5.4e-23 113.2 571 23.8
Haze_07281 Corylus avellana HOM05D005797 ORTHO05D006479 7.0e-23 112.8 505 24.0
QL05p054837 Quercus lobata HOM05D005797 ORTHO05D006479 7.0e-23 112.8 255 31.0
Atru.chr9.1003 Acer truncatum HOM05D005797 ORTHO05D006479 7.8e-22 109.4 317 28.4
Oeu007751.1 Olea europaea HOM05D005797 ORTHO05D006479 7.8e-22 109.4 147 49.0
QL10p005358 Quercus lobata HOM05D005797 ORTHO05D006479 1.7e-21 108.2 265 30.2
EL10Ac7g18067 Beta vulgaris HOM05D005797 ORTHO05D006479 2.3e-21 107.8 442 26.5
Nitab4.5_0010042g0010 Nicotiana tabacum HOM05D005797 ORTHO05D006479 3.0e-21 107.5 487 24.4
EL10Ac7g18068 Beta vulgaris HOM05D005797 ORTHO05D006479 6.6e-21 106.3 560 21.6
Nitab4.5_0003282g0040 Nicotiana tabacum HOM05D005797 ORTHO05D006479 6.6e-21 106.3 518 24.7
Oeu021116.1 Olea europaea HOM05D007775 ORTHO05D009858 1.9e-20 104.8 102 49.0
Peaxi162Scf00089g00723 Petunia axillaris HOM05D005797 ORTHO05D006479 1.9e-20 104.8 227 30.8
ClCG03G003480 Citrullus lanatus HOM05D005797 ORTHO05D006479 1.6e-19 101.7 523 25.0
Peaxi162Scf00536g00111 Petunia axillaris HOM05D005797 ORTHO05D006479 2.1e-19 101.3 115 40.9
Nn4g22471 Nelumbo nucifera HOM05D005797 ORTHO05D006479 8.0e-19 99.4 269 31.6
Nitab4.5_0010931g0020 Nicotiana tabacum HOM05D005797 ORTHO05D006479 8.0e-19 99.4 522 23.0
Rhsim01G0114700 Rhododendron simsii HOM05D005797 ORTHO05D006479 8.0e-19 99.4 110 46.4
Migut.O00498 Erythranthe guttata HOM05D005797 ORTHO05D006479 1.8e-18 98.2 111 40.5
MD06G1157600 Malus domestica HOM05D005797 ORTHO05D006479 3.1e-18 97.4 108 46.3
Solyc03g007140.3 Solanum lycopersicum HOM05D005797 ORTHO05D006479 4.0e-18 97.1 521 22.5
SalBow1G3539 Salvia bowleyana HOM05D005797 ORTHO05D006479 5.2e-18 96.7 570 25.1
CAN.G1022.3 Capsicum annuum HOM05D005797 ORTHO05D006479 6.8e-18 96.3 108 41.7
PGR044G0013 Punica granatum HOM05D005797 ORTHO05D006479 6.8e-18 96.3 536 24.6
RcHm_v2.0_Chr7g0191351 Rosa chinensis HOM05D005797 ORTHO05D006479 6.8e-18 96.3 396 26.8
Sc10g0010330 Simmondsia chinensis HOM05D005797 ORTHO05D006479 6.8e-18 96.3 116 37.9
CSS0013181 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 8.9e-18 95.9 95 44.2
Nn3g16589 Nelumbo nucifera HOM05D005797 ORTHO05D006479 8.9e-18 95.9 247 32.4
Sed0027282 Sechium edule HOM05D005797 ORTHO05D006479 8.9e-18 95.9 575 23.1
Nitab4.5_0002062g0010 Nicotiana tabacum HOM05D005797 ORTHO05D006479 2.0e-17 94.7 474 23.4
CAN.G472.30 Capsicum annuum HOM05D005797 ORTHO05D006479 3.4e-17 94.0 90 43.3
Sopen03g003130 Solanum pennellii HOM05D005797 ORTHO05D006479 7.5e-17 92.8 521 22.3
TWI39G1083 Tripterygium wilfordii HOM05D005797 ORTHO05D006479 9.8e-17 92.4 267 26.6
FvH4_5g07280 Fragaria vesca HOM05D005797 ORTHO05D006479 1.7e-16 91.7 105 44.8
FAN18G3318 Fragaria x ananassa HOM05D005797 ORTHO05D006479 1.7e-16 91.7 105 44.8
PGSC0003DMG400031024 Solanum tuberosum HOM05D005797 ORTHO05D006479 1.7e-16 91.7 499 23.2
Hund18537 Selenicereus undatus HOM05D005797 ORTHO05D006479 2.2e-16 91.3 522 23.8
vmacro21190 Vaccinium macrocarpon HOM05D005797 ORTHO05D006479 2.2e-16 91.3 90 44.4
Lj5A100T65 Lonicera japonica HOM05D005797 ORTHO05D006479 2.9e-16 90.9 234 29.5
CANSAT80G2591 Cannabis sativa HOM05D005797 ORTHO05D006479 3.7e-16 90.5 512 24.0
Aqoxy3G01381 Aquilegia oxysepala HOM05D005797 ORTHO05D006479 6.4e-16 89.7 125 40.8
FAN08G2881 Fragaria x ananassa HOM05D005797 ORTHO05D006479 6.4e-16 89.7 110 42.7
Sopen03g030640 Solanum pennellii HOM05D005797 ORTHO05D006479 8.3e-16 89.4 87 42.5
FAN13G0931 Fragaria x ananassa HOM05D005797 ORTHO05D006479 1.1e-15 89.0 105 43.8
Sabra12G0067900 Salix brachista HOM05D005797 ORTHO05D006479 1.9e-15 88.2 107 40.2
CAN.G769.1 Capsicum annuum HOM05D005797 ORTHO05D006479 2.4e-15 87.8 90 40.0
Ciclev10019558m.g Citrus clementina HOM05D005797 ORTHO05D006479 2.4e-15 87.8 334 26.0
Potri.012G093200 Populus trichocarpa HOM05D005797 ORTHO05D006479 3.2e-15 87.4 126 36.5
RcHm_v2.0_Chr2g0149281 Rosa chinensis HOM05D005797 ORTHO05D006479 5.4e-15 86.7 107 38.3
PGSC0003DMG400034759 Solanum tuberosum HOM05D005797 ORTHO05D006479 5.4e-15 86.7 91 40.7
Actinidia19380 Actinidia chinensis HOM05D005797 ORTHO05D006479 7.0e-15 86.3 85 45.9
Psat5g141720 Pisum sativum HOM05D005797 ORTHO05D006479 7.0e-15 86.3 518 22.4
PGSC0003DMG400046794 Solanum tuberosum HOM05D005797 ORTHO05D006479 7.0e-15 86.3 94 41.5
FAN04G0892 Fragaria x ananassa HOM05D005797 ORTHO05D006479 9.2e-15 85.9 105 41.9
CAN.G1022.5 Capsicum annuum HOM05D005797 ORTHO05D006479 1.2e-14 85.5 89 41.6
CsaV3_1G009280 Cucumis sativus L. HOM05D005797 ORTHO05D006479 1.6e-14 85.1 546 22.5
PGSC0003DMG401015175 Solanum tuberosum HOM05D005797 ORTHO05D006479 1.6e-14 85.1 500 21.8
ECA232G3585 Erigeron canadensis HOM05D005797 ORTHO05D006479 2.1e-14 84.7 111 37.8
Sed0007512 Sechium edule HOM05D005797 ORTHO05D006479 2.1e-14 84.7 595 22.7
Lsat_1_v5_gn_4_78921 Lactuca sativa HOM05D005797 ORTHO05D006479 2.7e-14 84.3 125 36.0
unitig_699.g19758 Utricularia gibba HOM05D005797 ORTHO05D006479 3.5e-14 84.0 128 36.7
Nn3g16591 Nelumbo nucifera HOM05D005797 ORTHO05D006479 4.6e-14 83.6 239 30.5
PGSC0003DMG400044028 Solanum tuberosum HOM05D005797 ORTHO05D006479 7.8e-14 82.8 91 38.5
Lalb_Chr23g0273471 Lupinus albus HOM05D005797 ORTHO05D006479 1.0e-13 82.4 164 34.8
Cc04_g10490 Coffea canephora HOM05D005797 ORTHO05D006479 1.3e-13 82.0 244 25.4
Solyc03g111500.3 Solanum lycopersicum HOM05D005797 ORTHO05D006479 1.3e-13 82.0 487 22.6
SGA_v2.0_scaffold172G39027 Striga asiatica HOM05D005797 ORTHO05D006479 1.3e-13 82.0 551 23.2
MELO3C002331.2 Cucumis melo HOM05D005797 ORTHO05D006479 1.7e-13 81.6 103 38.8
PGSC0003DMG400037834 Solanum tuberosum HOM05D005797 ORTHO05D006479 1.7e-13 81.6 98 39.8
Oeu036024.1 Olea europaea HOM05D005797 ORTHO05D006479 2.3e-13 81.3 178 32.0
Hund05629 Selenicereus undatus HOM05D005797 ORTHO05D006479 2.3e-13 81.3 90 43.3
PGSC0003DMG400031023 Solanum tuberosum HOM05D005797 ORTHO05D006479 3.0e-13 80.9 76 46.1
Sopen03g030540 Solanum pennellii HOM05D005797 ORTHO05D006479 3.9e-13 80.5 89 39.3
HanXRQChr16g0497931 Helianthus annuus HOM05D005797 ORTHO05D006479 1.1e-12 79.0 106 37.7
Hund05636 Selenicereus undatus HOM05D005797 ORTHO05D006479 1.1e-12 79.0 90 42.2
PGSC0003DMG400046008 Solanum tuberosum HOM05D005797 ORTHO05D006479 1.1e-12 79.0 94 39.4
Solyc03g111410.3 Solanum lycopersicum HOM05D005797 ORTHO05D006479 1.5e-12 78.6 89 38.2
Glyma.04G192400 Glycine max HOM05D005797 ORTHO05D006479 1.9e-12 78.2 110 37.3
HPP92_021432 Vanilla planifolia HOM05D022286 ORTHO05D006479 3.3e-12 77.4 94 36.2
CAN.G352.1 Capsicum annuum HOM05D005797 ORTHO05D006479 9.5e-12 75.9 90 35.6
PGSC0003DMG400035342 Solanum tuberosum HOM05D005797 ORTHO05D006479 3.6e-11 73.9 83 39.8
CiPaw.01G027400 Carya illinoinensis HOM05D000823 ORTHO05D000088 8.1e-11 72.8 136 30.1
DCAR_005590 Daucus carota HOM05D001479 ORTHO05D006479 1.1e-10 72.4 128 35.2
Medtr3g075140 Medicago truncatula HOM05D005797 ORTHO05D006479 1.8e-10 71.6 73 45.2
Solyc10g053890.2 Solanum lycopersicum HOM05D005797 ORTHO05D006479 1.8e-10 71.6 104 40.4
SEGI_18580 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 2.3e-10 71.2 95 34.7
TAR376G0714 Trochodendron aralioides HOM05D000823 ORTHO05D000088 2.3e-10 71.2 104 35.6
PSO063G1422 Papaver somniferum HOM05D005797 ORTHO05D006479 4.0e-10 70.5 347 25.1
Os02g0598200 Oryza sativa ssp. japonica HOM05D005797 ORTHO05D006479 5.2e-10 70.1 158 32.3
TPR.G26145 Trifolium pratense HOM05D005797 ORTHO05D006479 5.2e-10 70.1 89 39.3
CDE09G0812 Ceratophyllum demersum HOM05D005797 ORTHO05D006479 6.8e-10 69.7 70 40.0
TAR628G1487 Trochodendron aralioides HOM05D000823 ORTHO05D000088 8.9e-10 69.3 106 34.9
MSTRG.16968 Avicennia marina HOM05D000823 ORTHO05D000088 1.2e-09 68.9 119 31.9
Ca_16094_v3 Cicer arietinum L. HOM05D005797 ORTHO05D006479 1.2e-09 68.9 75 44.0
Haze_08007 Corylus avellana HOM05D000823 ORTHO05D000088 1.5e-09 68.6 81 35.8
Haze_08013 Corylus avellana HOM05D000823 ORTHO05D000088 1.5e-09 68.6 81 35.8
Prupe.4G178100 Prunus persica HOM05D000823 ORTHO05D000088 2.0e-09 68.2 105 34.3
SEGI_12498 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 2.0e-09 68.2 106 34.0
Atru.chr5.2872 Acer truncatum HOM05D000823 ORTHO05D000088 7.5e-09 66.2 112 35.7
MBI16_g31478_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 7.5e-09 66.2 91 34.1
VMungo1309G1346 Vigna mungo HOM05D005797 ORTHO05D006479 9.9e-09 65.9 472 23.7
CSS0000969 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 2.2e-08 64.7 94 36.2
CSS0025372 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 2.2e-08 64.7 94 36.2
Phvul.009G169300 Phaseolus vulgaris HOM05D005797 ORTHO05D006479 2.2e-08 64.7 73 42.5
SEGI_06639 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 2.2e-08 64.7 144 27.8
SEGI_41472 Sequoiadendron giganteum HOM05D000823 ORTHO05D006479 2.2e-08 64.7 144 27.8
Haze_08009 Corylus avellana HOM05D000823 ORTHO05D000088 2.9e-08 64.3 70 41.4
CiPaw.02G012800 Carya illinoinensis HOM05D000823 ORTHO05D000088 3.7e-08 63.9 153 28.8
QL06p043952 Quercus lobata HOM05D000395 ORTHO05D000088 3.7e-08 63.9 123 30.1
TAR625G0462 Trochodendron aralioides HOM05D000823 ORTHO05D000088 4.9e-08 63.5 85 32.9
Atru.chr2.2906 Acer truncatum HOM05D000823 ORTHO05D000088 6.4e-08 63.2 91 35.2
Migut.B01169 Erythranthe guttata HOM05D000823 ORTHO05D000088 6.4e-08 63.2 126 30.2
TAR381G0348 Trochodendron aralioides HOM05D000823 ORTHO05D000088 6.4e-08 63.2 104 29.8
SEGI_17947 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 8.3e-08 62.8 104 32.7
Atru.chr2.2842 Acer truncatum HOM05D000823 ORTHO05D000088 1.4e-07 62.0 84 38.1
Atru.chr2.2899 Acer truncatum HOM05D000823 ORTHO05D000088 1.4e-07 62.0 84 38.1
Actinidia36524 Actinidia chinensis HOM05D001349 ORTHO05D001980 1.4e-07 62.0 77 35.1
BraA09t36609Z Brassica rapa HOM05D000823 ORTHO05D000088 1.9e-07 61.6 103 34.0
Cpa.g.sc7.145 Carica papaya HOM05D000823 ORTHO05D000088 1.9e-07 61.6 151 27.8
HPP92_021430 Vanilla planifolia HOM05D000573 ORTHO05D000425 1.9e-07 61.6 78 39.7
Zm00001eb246280 Zea mays HOM05D005797 ORTHO05D006479 2.4e-07 61.2 72 41.7
ATR0626G172 Amborella trichopoda HOM05D000823 ORTHO05D000088 3.2e-07 60.8 87 33.3
SEGI_28063 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 4.1e-07 60.5 110 32.7
Gohir.A12G068300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 5.4e-07 60.1 83 34.9
Gohir.D12G068150 Gossypium hirsutum HOM05D000395 ORTHO05D000088 5.4e-07 60.1 83 34.9
Gorai.008G071600 Gossypium raimondii HOM05D000395 ORTHO05D000088 5.4e-07 60.1 83 34.9
Lj1g0016560 Lotus japonicus HOM05D000395 ORTHO05D000088 5.4e-07 60.1 138 29.7
EL10Ac9g21795 Beta vulgaris HOM05D000823 ORTHO05D000088 7.1e-07 59.7 85 34.1
Lj2A600T56 Lonicera japonica HOM05D000395 ORTHO05D000088 7.1e-07 59.7 117 29.9
Haze_08008 Corylus avellana HOM05D000823 ORTHO05D000088 9.2e-07 59.3 149 27.5
Gorai.013G245600 Gossypium raimondii HOM05D000395 ORTHO05D000088 9.2e-07 59.3 76 36.8
SalBow8G3609 Salvia bowleyana HOM05D000823 ORTHO05D000088 9.2e-07 59.3 111 30.6
TPR.G6085 Trifolium pratense HOM05D000395 ORTHO05D000088 9.2e-07 59.3 154 29.2
BcaC04g23179 Brassica carinata HOM05D000823 ORTHO05D000088 1.2e-06 58.9 100 32.0
CDE01G0565 Ceratophyllum demersum HOM05D000823 ORTHO05D000088 1.2e-06 58.9 118 28.8
PGSC0003DMG400005934 Solanum tuberosum HOM05D000823 ORTHO05D000088 1.2e-06 58.9 94 35.1
A07p16940 Brassica napus HOM05D000823 ORTHO05D000088 1.6e-06 58.5 120 34.2
BraA07t29420Z Brassica rapa HOM05D000823 ORTHO05D000088 1.6e-06 58.5 120 34.2
CAN.G760.5 Capsicum annuum HOM05D005797 ORTHO05D006479 1.6e-06 58.5 66 39.4
FAN08G1659 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.6e-06 58.5 114 32.5
MBI16_g26333_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 1.6e-06 58.5 83 31.3
unitig_61.g26370 Utricularia gibba HOM05D000823 ORTHO05D000088 1.6e-06 58.5 92 27.2
BcaB04g20080 Brassica carinata HOM05D000823 ORTHO05D000088 2.1e-06 58.2 103 35.9
A09p09600 Brassica napus HOM05D000823 ORTHO05D000088 2.1e-06 58.2 89 34.8
CSS0048062 Camellia sinensis var. sinensis HOM05D005797 ORTHO05D006479 2.1e-06 58.2 61 44.3
Aqoxy6G00935 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 2.7e-06 57.8 77 33.8
BcaB04g20081 Brassica carinata HOM05D000823 ORTHO05D000088 2.7e-06 57.8 102 31.4
Rhsim02G0167600 Rhododendron simsii HOM05D000395 ORTHO05D000088 2.7e-06 57.8 99 33.3
Hund08735 Selenicereus undatus HOM05D000823 ORTHO05D000088 2.7e-06 57.8 117 29.9
Glyma.03G246400 Glycine max HOM05D000823 ORTHO05D000088 3.5e-06 57.4 117 26.5
BcaC06g34772 Brassica carinata HOM05D000823 ORTHO05D000088 4.6e-06 57.0 120 33.3
C07p24780 Brassica napus HOM05D000823 ORTHO05D000088 4.6e-06 57.0 120 33.3
C09p11350 Brassica napus HOM05D000823 ORTHO05D000088 4.6e-06 57.0 86 32.6
COL.COLO4_22200 Corchorus olitorius HOM05D000395 ORTHO05D000088 4.6e-06 57.0 76 35.5
Prupe.4G178200 Prunus persica HOM05D000823 ORTHO05D000088 4.6e-06 57.0 87 32.2
SEGI_17863 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 4.6e-06 57.0 113 29.2
ATR0923G004 Amborella trichopoda HOM05D000823 ORTHO05D000088 6.0e-06 56.6 87 28.7
MELO3C007522.2 Cucumis melo HOM05D007907 ORTHO05D009079 6.0e-06 56.6 93 26.9
TAR626G0173 Trochodendron aralioides HOM05D005797 ORTHO05D006479 6.0e-06 56.6 50 48.0
COL.COLO4_25308 Corchorus olitorius HOM05D000395 ORTHO05D000088 7.8e-06 56.2 96 30.2
CsaV3_6G042820 Cucumis sativus L. HOM05D007907 ORTHO05D009079 7.8e-06 56.2 92 30.4
Gorai.007G209200 Gossypium raimondii HOM05D000395 ORTHO05D000088 7.8e-06 56.2 102 29.4


User provided reference genes

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