Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 1.1e-108 396.7 207 100.0
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 6.5e-74 281.2 205 70.7
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 3.2e-73 278.9 207 69.1
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 3.6e-72 275.4 205 70.2
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 8.8e-71 270.8 207 70.0
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 5.7e-70 268.1 207 68.1
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 9.7e-70 267.3 205 68.3
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 1.3e-69 266.9 207 70.0
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.8e-68 263.1 205 65.9
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 1.8e-68 263.1 207 65.7
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 3.1e-68 262.3 207 68.1
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 5.3e-68 261.5 205 65.9
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 1.6e-67 260.0 208 68.8
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 2.6e-67 259.2 207 66.2
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 2.6e-67 259.2 207 65.2
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 2.6e-67 259.2 207 65.2
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 1.3e-66 256.9 207 64.7
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 3.2e-65 252.3 207 62.8
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 3.2e-65 252.3 207 63.3
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 5.5e-65 251.5 207 63.8
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 2.7e-64 249.2 206 63.1
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 3.6e-64 248.8 209 64.1
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 6.1e-64 248.1 207 62.8
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.4e-63 246.9 208 63.5
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 2.3e-63 246.1 208 63.5
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 3.0e-63 245.7 207 61.4
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 4.0e-63 245.4 208 63.0
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 4.0e-63 245.4 208 65.4
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 1.2e-62 243.8 207 62.8
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 1.5e-62 243.4 207 63.8
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 2.0e-62 243.0 197 65.0
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 9.7e-62 240.7 192 66.1
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 1.1e-60 237.3 207 60.9
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 3.1e-60 235.7 205 61.5
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 4.1e-60 235.3 205 58.0
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 1.6e-59 233.4 208 61.5
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 5.9e-59 231.5 207 60.4
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 2.2e-58 229.6 213 58.7
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 2.5e-57 226.1 192 61.5
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 7.2e-57 224.6 193 62.7
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 9.4e-57 224.2 207 58.0
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.6e-56 223.4 213 56.8
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 3.6e-56 222.2 192 60.9
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 6.1e-56 221.5 172 68.0
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 1.8e-55 219.9 212 58.5
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 1.8e-55 219.9 207 57.5
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 1.8e-55 219.9 207 56.5
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 2.3e-55 219.5 205 58.0
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 5.2e-55 218.4 207 56.5
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 6.8e-55 218.0 204 54.9
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 6.8e-55 218.0 192 62.5
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 1.5e-54 216.9 205 56.6
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 2.6e-54 216.1 207 55.6
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 3.4e-54 215.7 207 55.6
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 5.7e-54 214.9 192 60.9
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 9.8e-54 214.2 207 56.0
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 9.8e-54 214.2 205 57.1
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 1.3e-53 213.8 201 57.2
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 1.3e-53 213.8 195 62.1
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.8e-53 212.6 192 60.9
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.7e-53 212.2 193 60.1
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 4.8e-53 211.8 201 57.2
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 6.3e-53 211.5 205 53.2
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.8e-52 209.9 205 51.7
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 1.8e-52 209.9 156 67.3
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 2.4e-52 209.5 246 49.2
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 3.1e-52 209.1 205 53.2
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 4.1e-52 208.8 205 55.1
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 5.4e-52 208.4 207 55.1
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 9.1e-52 207.6 204 52.0
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 1.6e-51 206.8 205 50.7
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 2.0e-51 206.5 193 57.0
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 2.0e-51 206.5 189 56.1
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 7.7e-51 204.5 205 56.1
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 1.0e-50 204.1 207 51.2
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 2.3e-50 203.0 205 54.6
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.3e-50 203.0 240 50.4
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 2.9e-50 202.6 192 56.8
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 6.5e-50 201.4 205 53.7
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 1.1e-49 200.7 205 55.1
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 1.9e-49 199.9 205 54.1
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 2.5e-49 199.5 205 53.2
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 3.3e-49 199.1 168 64.3
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 4.2e-49 198.7 204 52.5
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 9.5e-49 197.6 254 46.9
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 1.2e-48 197.2 205 53.2
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 8.0e-48 194.5 205 52.2
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.3e-47 193.0 195 54.4
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 6.8e-47 191.4 211 49.3
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 8.9e-47 191.0 207 50.7
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 1.7e-45 186.8 192 53.6
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 4.5e-43 178.7 174 58.6
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 1.9e-41 173.3 147 59.9
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 4.3e-41 172.2 202 46.5
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 1.6e-40 170.2 193 48.7
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 1.8e-39 166.8 164 55.5
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.7e-37 160.2 136 62.5
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 4.9e-37 158.7 145 59.3
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.9e-36 156.8 118 69.5
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 3.2e-36 156.0 194 49.0
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 6.0e-35 151.8 201 42.3
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 3.0e-34 149.4 117 66.7
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 1.9e-33 146.7 192 44.3
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 3.3e-33 146.0 161 46.6
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 7.3e-33 144.8 145 51.7
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.8e-32 142.9 150 52.0
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.7e-32 142.1 163 46.6
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.4e-31 140.6 111 67.6
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 3.1e-31 139.4 151 53.0
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.2e-27 127.5 90 71.1
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 4.6e-27 125.6 107 58.9
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.3e-23 113.2 90 67.8
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 6.8e-23 111.7 79 65.8
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 2.0e-22 110.2 110 49.1
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 2.2e-21 106.7 159 38.4
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 4.9e-21 105.5 198 31.8
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 5.4e-20 102.1 202 33.2
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 5.4e-20 102.1 131 45.8
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 3.3e-17 92.8 61 72.1
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 4.3e-17 92.4 90 55.6
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 4.4e-14 82.4 108 39.8
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 3.6e-08 62.8 60 53.3
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 2.4e-07 60.1 102 43.1
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 6.9e-07 58.5 61 47.5
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 1.5e-06 57.4 34 76.5
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 7.6e-06 55.1 45 55.6


User provided reference genes

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