Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu011231.1 Olea europaea HOM05D002454 ORTHO05D002581 7.8e-39 163.3 82 100.0
Migut.N00091 Erythranthe guttata HOM05D002454 ORTHO05D002581 4.3e-13 77.8 67 65.7
MSTRG.10103 Avicennia marina HOM05D002454 ORTHO05D002581 1.3e-12 76.3 73 58.9
MSTRG.24796 Avicennia marina HOM05D002454 ORTHO05D002581 2.1e-12 75.5 67 61.2
Oeu035681.1 Olea europaea HOM05D002454 ORTHO05D002581 2.4e-11 72.0 71 60.6
Hund24891 Selenicereus undatus HOM05D002454 ORTHO05D002581 6.9e-11 70.5 67 58.2
Migut.G00144 Erythranthe guttata HOM05D002454 ORTHO05D002581 9.0e-11 70.1 68 58.8
Duzib128G1382 Durio zibethinus HOM05D002454 ORTHO05D002581 1.5e-10 69.3 73 54.8
Sed0014863 Sechium edule HOM05D002454 ORTHO05D002581 1.5e-10 69.3 67 56.7
Manes.08G116900 Manihot esculenta HOM05D002454 ORTHO05D002581 2.0e-10 68.9 67 56.7
Thecc.05G313800 Theobroma cacao HOM05D002454 ORTHO05D002581 2.6e-10 68.6 67 56.7
vmacro15225 Vaccinium macrocarpon HOM05D002454 ORTHO05D002581 2.6e-10 68.6 69 53.6
COL.COLO4_10529 Corchorus olitorius HOM05D002454 ORTHO05D002581 3.4e-10 68.2 67 56.7
Duzib106G1307 Durio zibethinus HOM05D002454 ORTHO05D002581 4.5e-10 67.8 65 56.9
CiPaw.07G022000 Carya illinoinensis HOM05D002454 ORTHO05D002581 5.8e-10 67.4 67 55.2
CiPaw.08G161500 Carya illinoinensis HOM05D002454 ORTHO05D002581 5.8e-10 67.4 67 55.2
ClCG03G017350 Citrullus lanatus HOM05D002454 ORTHO05D002581 5.8e-10 67.4 67 55.2
Duzib177G0919 Durio zibethinus HOM05D002454 ORTHO05D002581 5.8e-10 67.4 67 56.7
Gohir.D13G180400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 7.6e-10 67.0 67 56.7
Gorai.013G205800 Gossypium raimondii HOM05D002454 ORTHO05D002581 7.6e-10 67.0 67 56.7
MELO3C015302.2 Cucumis melo HOM05D002454 ORTHO05D002581 1.0e-09 66.6 67 55.2
CsaV3_1G038780 Cucumis sativus L. HOM05D002454 ORTHO05D002581 1.0e-09 66.6 67 55.2
TAR362G1065 Trochodendron aralioides HOM05D002454 ORTHO05D002581 1.0e-09 66.6 67 55.2
Cpa.g.sc327.6 Carica papaya HOM05D002454 ORTHO05D002581 1.7e-09 65.9 67 53.7
Cc03_g01740 Coffea canephora HOM05D002454 ORTHO05D002581 1.7e-09 65.9 67 55.2
Nitab4.5_0005362g0040 Nicotiana tabacum HOM05D002454 ORTHO05D002581 1.7e-09 65.9 67 55.2
Gohir.A13G174600 Gossypium hirsutum HOM05D002454 ORTHO05D002581 2.9e-09 65.1 67 55.2
Sabra13G0013500 Salix brachista HOM05D002454 ORTHO05D002581 2.9e-09 65.1 67 53.7
Sabra13G0017600 Salix brachista HOM05D002454 ORTHO05D002581 2.9e-09 65.1 67 53.7
arahy.Tifrunner.gnm1.ann1.0W5UIW Arachis hypogaea HOM05D002454 ORTHO05D002581 3.8e-09 64.7 67 52.2
Eucgr.B01597 Eucalyptus grandis HOM05D002454 ORTHO05D002581 3.8e-09 64.7 67 53.7
arahy.Tifrunner.gnm1.ann1.QD5JHM Arachis hypogaea HOM05D002454 ORTHO05D002581 5.0e-09 64.3 67 52.2
Lalb_Chr06g0167731 Lupinus albus HOM05D002454 ORTHO05D002581 5.0e-09 64.3 67 52.2
Lalb_Chr21g0310561 Lupinus albus HOM05D002454 ORTHO05D002581 5.0e-09 64.3 67 52.2
PGR031G1098 Punica granatum HOM05D002454 ORTHO05D002581 5.0e-09 64.3 67 55.2
QL03p020088 Quercus lobata HOM05D002454 ORTHO05D002581 5.0e-09 64.3 67 53.7
Glyma.20G236900 Glycine max HOM05D002454 ORTHO05D002581 6.5e-09 63.9 67 53.7
Gohir.A11G268400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 6.5e-09 63.9 67 55.2
Gorai.007G300500 Gossypium raimondii HOM05D002454 ORTHO05D002581 6.5e-09 63.9 67 55.2
Sc09g0002920 Simmondsia chinensis HOM05D002454 ORTHO05D002581 6.5e-09 63.9 67 50.7
THA.LOC104802794 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 6.5e-09 63.9 67 53.7
Aqoxy2G02946 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 8.4e-09 63.5 67 53.7
Glyma.10G151300 Glycine max HOM05D002454 ORTHO05D002581 8.4e-09 63.5 67 53.7
Gohir.D11G278300 Gossypium hirsutum HOM05D002454 ORTHO05D002581 8.4e-09 63.5 67 55.2
BcaC03g17802 Brassica carinata HOM05D002454 ORTHO05D002581 1.1e-08 63.2 67 55.2
BolC2t11893H Brassica oleracea HOM05D002454 ORTHO05D002581 1.1e-08 63.2 67 55.2
DCAR_027067 Daucus carota HOM05D002454 ORTHO05D002581 1.1e-08 63.2 67 50.7
Phvul.007G197500 Phaseolus vulgaris HOM05D002454 ORTHO05D002581 1.1e-08 63.2 67 52.2
Sabra05G0030000 Salix brachista HOM05D002454 ORTHO05D002581 1.1e-08 63.2 67 53.7
Sp2g20920 Schrenkiella parvula HOM05D002454 ORTHO05D002581 1.1e-08 63.2 67 55.2
MD04G1199400 Malus domestica HOM05D002454 ORTHO05D002581 1.4e-08 62.8 67 50.7
Manes.09G171100 Manihot esculenta HOM05D002454 ORTHO05D002581 1.4e-08 62.8 67 52.2
Nn3g21488 Nelumbo nucifera HOM05D002454 ORTHO05D002581 1.4e-08 62.8 67 52.2
THA.LOC104818724 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 1.4e-08 62.8 67 55.2
Atru.chr2.78 Acer truncatum HOM05D002454 ORTHO05D002581 1.9e-08 62.4 67 53.7
AL3G16170 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 1.9e-08 62.4 67 53.7
CSS0040486 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.9e-08 62.4 68 54.4
Lj5g0022176 Lotus japonicus HOM05D002454 ORTHO05D002581 1.9e-08 62.4 67 52.2
MD12G1212200 Malus domestica HOM05D002454 ORTHO05D002581 1.9e-08 62.4 67 50.7
AL6G39160 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 2.5e-08 62.0 67 53.7
A02p38750 Brassica napus HOM05D002454 ORTHO05D002581 2.5e-08 62.0 67 53.7
Ca_10141_v3 Cicer arietinum L. HOM05D002454 ORTHO05D002581 2.5e-08 62.0 67 50.7
Ciclev10002947m.g Citrus clementina HOM05D002454 ORTHO05D002581 2.5e-08 62.0 67 52.2
Medtr1g083420 Medicago truncatula HOM05D002454 ORTHO05D002581 2.5e-08 62.0 67 50.7
Aa31LG11G9520 Aethionema arabicum HOM05D002454 ORTHO05D002581 3.2e-08 61.6 67 55.2
Carub.0006s2479 Capsella rubella HOM05D002454 ORTHO05D002581 3.2e-08 61.6 67 52.2
Cc02_g34220 Coffea canephora HOM05D002454 ORTHO05D002581 3.2e-08 61.6 63 57.1
PGR031G0452 Punica granatum HOM05D002454 ORTHO05D002581 3.2e-08 61.6 67 50.7
AT3G05550 Arabidopsis thaliana HOM05D002454 ORTHO05D002581 4.2e-08 61.2 67 53.7
CSS0023853 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 4.2e-08 61.2 68 52.9
TWI36G0108 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 4.2e-08 61.2 67 49.3
AT5G27760 Arabidopsis thaliana HOM05D002454 ORTHO05D002581 5.5e-08 60.8 81 48.1
BcaNung04751 Brassica carinata HOM05D002454 ORTHO05D002581 5.5e-08 60.8 67 53.7
BraA06t26657Z Brassica rapa HOM05D002454 ORTHO05D002581 5.5e-08 60.8 67 53.7
CARHR186270 Cardamine hirsuta HOM05D002454 ORTHO05D002581 5.5e-08 60.8 67 52.2
Lalb_Chr02g0148071 Lupinus albus HOM05D002454 ORTHO05D002581 5.5e-08 60.8 67 49.3
MBI05_g23047_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 5.5e-08 60.8 73 49.3
Potri.005G024500 Populus trichocarpa HOM05D002454 ORTHO05D002581 5.5e-08 60.8 67 52.2
Prupe.6G319900 Prunus persica HOM05D002454 ORTHO05D002581 5.5e-08 60.8 67 50.7
TPR.G17721 Trifolium pratense HOM05D002454 ORTHO05D002581 5.5e-08 60.8 67 50.7
Os02g0592400 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 7.1e-08 60.5 67 47.8
CSS0006290 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 9.3e-08 60.1 67 49.3
CSS0039594 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 9.3e-08 60.1 67 49.3
Carub.0003s0485 Capsella rubella HOM05D002454 ORTHO05D002581 9.3e-08 60.1 67 52.2
CARHR079950 Cardamine hirsuta HOM05D002454 ORTHO05D002581 9.3e-08 60.1 67 52.2
Thhalv10005192m.g Eutrema salsugineum HOM05D002454 ORTHO05D002581 9.3e-08 60.1 67 50.7
Potri.013G015400 Populus trichocarpa HOM05D002454 ORTHO05D002581 9.3e-08 60.1 67 50.7
HPP92_019157 Vanilla planifolia HOM05D002454 ORTHO05D002581 9.3e-08 60.1 62 54.8
BcaB07g34201 Brassica carinata HOM05D002454 ORTHO05D002581 1.2e-07 59.7 67 52.2
CAN.G1485.4 Capsicum annuum HOM05D002454 ORTHO05D002581 1.2e-07 59.7 63 52.4
Eucgr.H04538 Eucalyptus grandis HOM05D002454 ORTHO05D002581 1.2e-07 59.7 67 50.7
Lsat_1_v5_gn_7_72000 Lactuca sativa HOM05D002454 ORTHO05D002581 1.2e-07 59.7 69 52.2
Rhsim02G0008300 Rhododendron simsii HOM05D002454 ORTHO05D002581 1.2e-07 59.7 88 44.3
TAR633G0870 Trochodendron aralioides HOM05D002454 ORTHO05D002581 1.2e-07 59.7 67 50.7
Hund21716 Selenicereus undatus HOM05D002454 ORTHO05D002581 1.6e-07 59.3 67 49.3
Oeu017262.1 Olea europaea HOM05D002454 ORTHO05D002581 2.1e-07 58.9 61 55.7
TAR636G0741 Trochodendron aralioides HOM05D002454 ORTHO05D002581 2.1e-07 58.9 67 46.3
Ah.06g189860 Amaranthus hybridus HOM05D002454 ORTHO05D002581 2.7e-07 58.5 67 49.3
DCAR_029391 Daucus carota HOM05D002454 ORTHO05D002581 2.7e-07 58.5 69 50.7
Sp3g04400 Schrenkiella parvula HOM05D002454 ORTHO05D002581 2.7e-07 58.5 67 52.2
Zm00001eb183530 Zea mays HOM05D002454 ORTHO05D002581 2.7e-07 58.5 67 49.3
Nitab4.5_0003985g0020 Nicotiana tabacum HOM05D002454 ORTHO05D002581 3.5e-07 58.2 60 50.0
Aa31LG5G15820 Aethionema arabicum HOM05D002454 ORTHO05D002581 4.6e-07 57.8 67 50.7
ATR0796G294 Amborella trichopoda HOM05D002454 ORTHO05D002581 4.6e-07 57.8 63 50.8
Lsat_1_v5_gn_9_124081 Lactuca sativa HOM05D002454 ORTHO05D002581 4.6e-07 57.8 63 50.8
Solyc01g066720.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 4.6e-07 57.8 59 54.2
Sopen01g028330 Solanum pennellii HOM05D002454 ORTHO05D002581 4.6e-07 57.8 59 54.2
PGSC0003DMG400011336 Solanum tuberosum HOM05D002454 ORTHO05D002581 4.6e-07 57.8 59 54.2
GSVIVG01035144001 Vitis vinifera HOM05D002454 ORTHO05D002581 4.6e-07 57.8 57 57.9
Rhsim07G0190100 Rhododendron simsii HOM05D002454 ORTHO05D002581 6.1e-07 57.4 65 50.8
Zm00001eb245840 Zea mays HOM05D002454 ORTHO05D002581 7.9e-07 57.0 67 47.8
AUR62000754 Chenopodium quinoa HOM05D002454 ORTHO05D002581 1.0e-06 56.6 71 46.5
HanXRQChr11g0339891 Helianthus annuus HOM05D002454 ORTHO05D002581 1.0e-06 56.6 63 50.8
TWI12G0909 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 1.0e-06 56.6 67 46.3
Zm00001eb111350 Zea mays HOM05D002454 ORTHO05D002581 1.0e-06 56.6 63 49.2
Hma1.2p1_3694F.1_g337270 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 1.3e-06 56.2 67 50.7
Os07g0673900 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 1.3e-06 56.2 67 44.8
CDE02G0786 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 1.8e-06 55.8 67 49.3
CDE09G0549 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 1.8e-06 55.8 67 49.3
CANSAT54G0741 Cannabis sativa HOM05D002454 ORTHO05D002581 2.3e-06 55.5 67 50.7
ECA236G1977 Erigeron canadensis HOM05D002454 ORTHO05D002581 2.3e-06 55.5 63 49.2
Solyc01g099820.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 2.3e-06 55.5 63 49.2
Sopen00g005600 Solanum pennellii HOM05D002454 ORTHO05D002581 2.3e-06 55.5 63 49.2
Sopen01g043330 Solanum pennellii HOM05D002454 ORTHO05D002581 2.3e-06 55.5 63 49.2
CAN.G1459.20 Capsicum annuum HOM05D002454 ORTHO05D002581 3.0e-06 55.1 66 47.0
HanXRQChr09g0248141 Helianthus annuus HOM05D002454 ORTHO05D002581 3.0e-06 55.1 61 49.2
PGSC0003DMG400024718 Solanum tuberosum HOM05D002454 ORTHO05D002581 3.0e-06 55.1 63 49.2
PSO170G3553 Papaver somniferum HOM05D002454 ORTHO05D002581 5.1e-06 54.3 63 46.0
PSO407G0328 Papaver somniferum HOM05D002454 ORTHO05D002581 6.7e-06 53.9 63 46.0
Psat6g150840 Pisum sativum HOM05D002454 ORTHO05D002581 6.7e-06 53.9 73 43.8
Hund07103 Selenicereus undatus HOM05D002454 ORTHO05D002581 8.7e-06 53.5 63 47.6


User provided reference genes

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