Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 4.7e-208 728.0 406 100.0
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 5.4e-47 193.0 324 46.6
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.4e-39 168.3 319 46.7
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 1.9e-39 167.9 282 56.0
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 7.1e-39 166.0 286 47.2
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 3.5e-38 163.7 321 43.6
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 1.0e-37 162.2 324 45.4
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 2.3e-37 161.0 317 44.2
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.2e-35 155.2 310 44.8
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.2e-35 155.2 316 44.9
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.6e-35 154.8 302 46.7
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 3.6e-35 153.7 316 45.3
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 4.7e-35 153.3 326 41.4
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.1e-34 152.1 316 43.7
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 6.8e-34 149.4 316 38.0
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 2.6e-33 147.5 318 43.1
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 4.4e-33 146.7 315 43.2
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.4e-31 141.7 327 48.0
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 2.1e-30 137.9 317 41.3
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 7.8e-30 136.0 305 41.3
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.3e-29 135.2 319 41.7
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 1.3e-29 135.2 332 42.8
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 1.7e-29 134.8 295 41.7
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 6.6e-29 132.9 302 44.4
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 3.3e-28 130.6 311 43.4
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 3.3e-28 130.6 311 42.8
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 1.2e-27 128.6 304 39.1
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 2.8e-27 127.5 310 32.6
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 3.6e-27 127.1 318 39.9
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 4.7e-27 126.7 258 45.7
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 4.7e-27 126.7 312 42.9
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 1.4e-26 125.2 307 43.0
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 2.0e-25 121.3 311 39.5
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 2.6e-25 120.9 299 41.1
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 5.8e-25 119.8 300 39.3
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 7.6e-25 119.4 304 32.9
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 7.6e-25 119.4 306 33.3
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 1.3e-24 118.6 303 39.9
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 1.3e-24 118.6 295 41.0
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 4.9e-24 116.7 312 41.7
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.1e-23 115.5 303 38.9
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 3.2e-23 114.0 301 39.9
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 4.2e-23 113.6 312 38.1
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 2.1e-22 111.3 295 39.7
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 7.8e-22 109.4 316 38.0
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 1.7e-21 108.2 305 39.0
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 8.7e-21 105.9 302 28.8
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 1.5e-20 105.1 303 38.0
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 1.9e-20 104.8 319 38.6
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.3e-20 104.0 307 31.3
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 3.3e-20 104.0 326 36.5
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 5.6e-20 103.2 304 38.5
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 9.6e-20 102.4 317 39.1
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 9.6e-20 102.4 297 39.4
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 9.6e-20 102.4 306 46.7
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 1.6e-19 101.7 308 37.7
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 2.8e-19 100.9 211 38.9
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.8e-19 100.1 277 38.6
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 6.2e-19 99.8 321 34.6
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.1e-18 99.0 319 32.9
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.1e-18 99.0 310 40.0
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 4.0e-18 97.1 312 35.9
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.5e-17 95.1 306 37.9
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 3.4e-17 94.0 224 44.2
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.3e-16 92.0 310 40.0
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 2.2e-16 91.3 292 38.0
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 6.4e-16 89.7 300 36.7
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 7.1e-15 86.3 276 39.9
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 1.2e-14 85.5 182 34.6
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 2.3e-13 81.3 293 35.8
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 5.1e-13 80.1 307 38.4
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 6.7e-13 79.7 101 42.6
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.1e-12 79.0 84 50.0
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 3.3e-12 77.4 302 35.4
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 7.4e-12 76.3 88 48.9
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 1.6e-11 75.1 290 28.6
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 3.6e-11 73.9 293 35.2
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 6.2e-11 73.2 286 35.3
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 6.2e-11 73.2 169 30.8
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 8.1e-11 72.8 280 40.0
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 5.3e-10 70.1 272 26.8
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 5.3e-10 70.1 77 49.4
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 1.2e-09 68.9 299 41.5
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 1.5e-09 68.6 198 40.9
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 2.0e-09 68.2 101 41.6
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 2.6e-09 67.8 88 42.0
Solyc03g005710.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 2.6e-09 67.8 89 43.8
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 5.8e-09 66.6 83 44.6
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 1.3e-08 65.5 122 40.2
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 1.3e-08 65.5 122 40.2
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 1.7e-08 65.1 88 42.0
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 2.2e-08 64.7 92 41.3
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.8e-08 63.9 172 43.0
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 3.8e-08 63.9 81 45.7
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 3.8e-08 63.9 315 41.0
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 3.8e-08 63.9 93 45.2
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 3.8e-08 63.9 127 35.4
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 4.9e-08 63.5 315 41.6
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 8.4e-08 62.8 105 41.0
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 1.1e-07 62.4 121 38.8
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.1e-07 62.4 83 43.4
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 1.1e-07 62.4 112 35.7
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 1.1e-07 62.4 300 30.0
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 1.4e-07 62.0 98 38.8
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 1.4e-07 62.0 81 44.4
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 1.4e-07 62.0 163 30.7
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 3.2e-07 60.8 39 64.1
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 4.2e-07 60.5 78 48.7
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 4.2e-07 60.5 78 48.7
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 4.2e-07 60.5 41 68.3
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 4.2e-07 60.5 115 39.1
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 4.2e-07 60.5 36 69.4
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 4.2e-07 60.5 42 61.9
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 4.2e-07 60.5 42 61.9
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 4.2e-07 60.5 95 37.9
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 5.5e-07 60.1 90 42.2
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 5.5e-07 60.1 58 55.2
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 5.5e-07 60.1 72 44.4
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 5.5e-07 60.1 37 75.7
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 5.5e-07 60.1 37 75.7
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 5.5e-07 60.1 83 42.2
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 5.5e-07 60.1 95 36.8
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 7.1e-07 59.7 72 45.8
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 7.1e-07 59.7 33 81.8
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 7.1e-07 59.7 39 66.7
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 7.1e-07 59.7 81 44.4
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 7.1e-07 59.7 48 56.2
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 9.3e-07 59.3 71 46.5
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 9.3e-07 59.3 43 60.5
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 9.3e-07 59.3 81 44.4
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 9.3e-07 59.3 81 44.4
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 9.3e-07 59.3 68 47.1
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 1.2e-06 58.9 71 47.9
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 1.2e-06 58.9 32 78.1
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 1.2e-06 58.9 42 57.1
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 1.2e-06 58.9 42 57.1
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 1.2e-06 58.9 116 37.1
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 1.2e-06 58.9 129 33.3
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 1.6e-06 58.5 37 73.0
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 1.6e-06 58.5 39 66.7
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 1.6e-06 58.5 36 69.4
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 1.6e-06 58.5 83 39.8
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 2.1e-06 58.2 85 38.8
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 2.1e-06 58.2 41 63.4
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 2.1e-06 58.2 191 39.3
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 2.1e-06 58.2 85 40.0
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 2.1e-06 58.2 80 42.5
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 2.1e-06 58.2 42 71.4
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 2.1e-06 58.2 89 36.0
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 2.7e-06 57.8 87 42.5
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 2.7e-06 57.8 42 57.1
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 2.7e-06 57.8 82 42.7
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 3.5e-06 57.4 74 44.6
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 3.5e-06 57.4 98 34.7
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 3.5e-06 57.4 81 44.4
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 4.6e-06 57.0 33 81.8
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 4.6e-06 57.0 124 35.5
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 4.6e-06 57.0 42 69.0
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 4.6e-06 57.0 134 33.6
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 4.6e-06 57.0 49 61.2
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 6.0e-06 56.6 42 59.5
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 6.0e-06 56.6 70 44.3
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 6.0e-06 56.6 54 53.7
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 6.0e-06 56.6 37 64.9
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 6.0e-06 56.6 42 57.1
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 6.0e-06 56.6 42 59.5
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 7.9e-06 56.2 63 50.8
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 7.9e-06 56.2 74 44.6


User provided reference genes

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