Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 2.5e-136 488.8 253 100.0
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 3.3e-80 302.4 260 62.3
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 4.1e-78 295.4 262 62.6
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 6.7e-73 278.1 257 59.9
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 1.8e-70 270.0 259 59.5
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 1.0e-68 264.2 270 57.4
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 2.2e-68 263.1 231 62.8
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 2.9e-68 262.7 248 58.5
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 8.5e-68 261.2 237 59.9
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 1.1e-67 260.8 247 59.1
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 1.1e-67 260.8 253 58.9
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 7.2e-67 258.1 222 61.3
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 3.6e-66 255.8 242 59.5
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 1.8e-65 253.4 201 64.2
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 3.0e-65 252.7 229 62.0
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 5.2e-65 251.9 241 59.8
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 5.2e-65 251.9 186 68.3
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 6.7e-65 251.5 229 60.7
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 8.8e-65 251.1 168 75.6
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 1.2e-64 250.8 217 61.8
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 1.5e-64 250.4 259 53.7
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 4.4e-64 248.8 199 64.8
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 5.7e-64 248.4 169 72.2
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 5.7e-64 248.4 214 62.6
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 7.5e-64 248.1 225 61.3
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 9.7e-64 247.7 215 61.4
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 2.2e-63 246.5 232 59.1
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 2.8e-63 246.1 211 60.7
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 3.7e-63 245.7 206 63.6
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 3.7e-63 245.7 232 59.9
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 3.7e-63 245.7 231 57.1
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 4.8e-63 245.4 196 65.8
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 4.8e-63 245.4 222 60.4
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 6.3e-63 245.0 238 55.5
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 1.1e-62 244.2 226 59.3
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 1.4e-62 243.8 164 73.2
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 1.4e-62 243.8 238 55.0
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 1.4e-62 243.8 255 53.3
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 1.8e-62 243.4 200 63.5
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 2.4e-62 243.0 251 55.4
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 3.1e-62 242.7 232 59.1
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 5.3e-62 241.9 235 57.0
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 7.0e-62 241.5 212 61.3
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 7.0e-62 241.5 193 65.3
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 9.1e-62 241.1 197 65.0
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 9.1e-62 241.1 196 64.8
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 1.2e-61 240.7 231 58.4
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 1.2e-61 240.7 228 59.2
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 1.6e-61 240.4 233 58.4
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 2.0e-61 240.0 247 55.9
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 2.0e-61 240.0 240 55.0
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 3.5e-61 239.2 231 58.4
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 3.5e-61 239.2 231 58.4
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 4.5e-61 238.8 245 56.3
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 4.5e-61 238.8 240 53.8
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 4.5e-61 238.8 223 58.7
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 7.7e-61 238.0 200 62.5
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 7.7e-61 238.0 232 57.8
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 7.7e-61 238.0 195 62.6
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 1.0e-60 237.7 161 73.3
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.0e-60 237.7 220 58.2
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 1.0e-60 237.7 244 55.7
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.3e-60 237.3 233 57.1
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 1.7e-60 236.9 159 71.7
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 1.7e-60 236.9 231 58.9
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 1.7e-60 236.9 221 58.8
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 2.2e-60 236.5 267 52.8
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 2.2e-60 236.5 239 55.2
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 2.9e-60 236.1 201 60.7
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 3.8e-60 235.7 195 63.6
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 3.8e-60 235.7 199 62.3
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 3.8e-60 235.7 199 62.3
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 5.0e-60 235.3 234 56.0
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 8.5e-60 234.6 162 69.8
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 1.5e-59 233.8 199 61.8
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 1.9e-59 233.4 232 55.6
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 4.2e-59 232.3 198 62.6
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 4.2e-59 232.3 214 59.8
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 4.2e-59 232.3 161 71.4
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 4.2e-59 232.3 226 56.2
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 7.2e-59 231.5 162 72.2
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.7e-58 229.6 160 69.4
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.7e-58 229.6 252 51.6
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 6.1e-58 228.4 231 55.0
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 8.0e-58 228.0 231 57.1
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 1.4e-57 227.3 154 70.8
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 1.4e-57 227.3 162 68.5
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 3.0e-57 226.1 263 51.3
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 5.2e-57 225.3 232 55.6
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 5.2e-57 225.3 161 68.9
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.2e-57 225.3 257 50.2
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 8.8e-57 224.6 162 67.9
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 1.5e-56 223.8 245 53.9
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 5.9e-53 211.8 160 65.6
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 5.9e-53 211.8 175 63.4
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 8.6e-52 208.0 158 67.7
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 1.5e-51 207.2 140 72.1
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.2e-50 204.1 153 68.6
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 3.4e-48 196.1 164 61.6
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 3.7e-47 192.6 159 61.6
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.4e-46 190.7 159 61.0
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 7.0e-46 188.3 156 61.5
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 2.3e-41 173.3 184 50.5
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 1.7e-39 167.2 156 59.0
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 1.6e-37 160.6 194 45.4
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 2.0e-37 160.2 157 54.1
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 2.0e-37 160.2 244 42.2
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 4.7e-34 149.1 158 48.7
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 2.0e-32 143.7 170 45.9
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 3.4e-32 142.9 159 46.5
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 6.4e-31 138.7 94 71.3
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.1e-30 137.9 197 44.7
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.0e-28 131.3 230 40.0
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 5.6e-27 125.6 88 67.0
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 5.6e-27 125.6 82 74.4
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 2.8e-26 123.2 126 54.0
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 2.3e-25 120.2 105 62.9
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.5e-24 117.5 84 69.0
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 2.0e-24 117.1 117 54.7
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 3.4e-24 116.3 130 41.5
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 1.1e-22 111.3 117 53.0
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 7.1e-22 108.6 75 68.0
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 7.8e-21 105.1 127 48.8
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 1.5e-19 100.9 69 69.6
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 8.1e-18 95.1 101 52.5
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 1.6e-13 80.9 128 39.1
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 7.8e-13 78.6 53 75.5
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 3.3e-11 73.2 82 46.3
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 2.8e-10 70.1 95 46.3
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 9.0e-09 65.1 98 42.9
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 2.0e-08 63.9 121 35.5
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 6.4e-07 58.9 196 24.5
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 3.2e-06 56.6 239 23.4
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 4.2e-06 56.2 239 23.4
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 5.4e-06 55.8 136 27.2
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 7.1e-06 55.5 145 24.8


User provided reference genes

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