Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 0.0e+00 1366.7 692 100.0
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 0.0e+00 1173.3 688 86.9
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 8.4e-243 844.0 667 65.5
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 6.0e-241 837.8 699 62.4
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 1.6e-238 829.7 717 61.2
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 5.3e-237 824.7 711 61.7
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 9.0e-237 823.9 724 60.8
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 9.0e-237 823.9 724 60.8
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 9.3e-234 813.9 720 60.6
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 9.3e-226 787.3 720 58.8
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 1.0e-224 783.9 713 58.3
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 2.8e-222 775.8 715 58.6
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 6.3e-222 774.6 731 56.8
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 1.1e-221 773.9 666 60.2
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 3.8e-219 765.4 731 56.0
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.4e-218 763.5 720 56.9
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 3.6e-217 758.8 695 59.0
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 7.9e-217 757.7 718 56.1
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.5e-215 753.4 699 58.5
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.8e-214 749.2 688 58.4
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 1.1e-213 747.3 730 57.1
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 2.4e-213 746.1 732 56.1
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 1.5e-212 743.4 721 55.9
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 1.5e-212 743.4 701 57.5
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 3.4e-212 742.3 726 55.4
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 4.5e-212 741.9 712 55.8
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 4.5e-212 741.9 713 56.1
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.3e-211 740.3 721 56.6
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 2.2e-211 739.6 720 55.8
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 3.8e-211 738.8 721 56.4
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 2.5e-210 736.1 731 54.9
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 2.5e-210 736.1 715 56.4
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 2.7e-209 732.6 727 55.3
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 6.1e-209 731.5 720 55.3
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 3.9e-208 728.8 732 54.5
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 2.8e-206 722.6 695 56.4
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 4.8e-206 721.8 706 54.7
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 4.8e-206 721.8 692 57.9
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 1.4e-205 720.3 706 55.8
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 1.4e-205 720.3 718 55.4
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.8e-205 719.9 721 54.4
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 2.4e-205 719.5 671 56.8
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 7.0e-205 718.0 722 54.7
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 7.0e-205 718.0 710 54.9
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.0e-204 716.5 744 52.0
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 3.5e-204 715.7 709 54.4
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 4.5e-204 715.3 724 55.2
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 4.5e-204 715.3 723 55.2
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 5.9e-204 714.9 709 54.4
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 7.7e-204 714.5 721 53.5
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.0e-203 714.1 711 54.6
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 2.9e-203 712.6 721 53.8
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 5.0e-203 711.8 703 54.9
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 7.2e-202 708.0 722 53.9
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 1.2e-201 707.2 706 54.5
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 6.1e-201 704.9 716 54.2
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 2.3e-200 703.0 704 53.3
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 8.8e-200 701.0 722 53.2
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 5.7e-199 698.4 700 54.3
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 2.8e-198 696.0 710 53.0
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 3.1e-197 692.6 713 52.6
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 4.1e-197 692.2 714 53.5
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 3.2e-194 682.6 714 52.8
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 4.2e-194 682.2 710 52.1
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 4.2e-194 682.2 703 53.3
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 7.2e-194 681.4 699 52.6
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.2e-193 680.6 710 51.8
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.5e-191 673.7 714 51.8
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.4e-191 672.5 710 51.5
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 7.5e-191 671.4 707 51.1
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 8.3e-190 667.9 711 52.3
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 2.4e-189 666.4 713 53.9
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 5.9e-188 661.8 710 51.1
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 1.0e-187 661.0 713 52.0
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 3.8e-187 659.1 748 49.2
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 2.5e-186 656.4 715 51.9
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 2.5e-186 656.4 713 50.6
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.6e-185 653.7 717 49.8
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 8.0e-185 651.4 707 49.6
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 1.8e-184 650.2 728 50.0
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 6.8e-184 648.3 732 48.6
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 5.7e-183 645.2 690 51.0
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 1.3e-182 644.0 726 49.9
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 4.9e-182 642.1 726 49.0
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 1.3e-179 634.0 725 49.0
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 2.3e-179 633.3 730 49.3
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 2.9e-179 632.9 796 48.2
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 6.6e-179 631.7 728 49.0
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 8.6e-179 631.3 729 49.2
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 4.3e-178 629.0 722 48.8
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 4.3e-178 629.0 600 56.2
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 1.2e-177 627.5 709 48.7
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 1.4e-176 624.0 615 53.8
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 2.0e-175 620.2 619 55.3
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 3.4e-175 619.4 701 49.8
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 7.5e-175 618.2 701 48.8
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 1.7e-174 617.1 722 47.6
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 1.8e-173 613.6 720 47.8
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 4.1e-173 612.5 720 47.8
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 9.2e-173 611.3 762 46.3
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 9.2e-173 611.3 722 47.2
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 1.2e-172 610.9 719 48.1
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 2.0e-172 610.1 740 47.7
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 2.0e-172 610.1 634 53.3
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 4.6e-172 609.0 695 48.6
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 7.3e-170 601.7 635 53.1
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 4.3e-162 575.9 626 51.8
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 7.3e-162 575.1 690 45.9
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 5.8e-151 538.9 629 49.0
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 1.9e-146 523.9 624 47.0
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 4.3e-146 522.7 767 41.6
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 3.4e-143 513.1 642 44.1
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.6e-140 504.2 669 44.8
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 3.9e-139 499.6 538 52.4
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 2.9e-134 483.4 474 53.2
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.9e-122 444.1 707 39.7
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.6e-121 441.0 815 35.6
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.4e-120 437.2 757 39.1
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 6.5e-118 429.1 722 37.4
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.3e-115 421.4 761 38.1
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.4e-88 331.6 551 37.7
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 7.7e-87 325.9 865 29.1
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 5.5e-85 319.7 485 39.2
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.3e-81 308.5 495 37.6
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 9.5e-69 265.8 436 38.3
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 1.2e-60 238.8 667 27.7
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 3.3e-45 187.6 224 45.1
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 4.7e-44 183.7 297 35.7
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 6.4e-41 173.3 199 47.7
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 3.2e-40 171.0 126 67.5
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.6e-39 168.7 134 61.9
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 4.6e-39 167.2 218 42.7
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 3.4e-34 151.0 173 50.3
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 5.8e-34 150.2 98 73.5
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 3.0e-30 137.9 94 69.1
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 3.0e-30 137.9 95 67.4
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.1e-29 136.0 130 57.7
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 2.7e-23 114.8 129 45.7
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 6.9e-19 100.1 242 31.8
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 5.4e-16 90.5 471 26.3
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 3.5e-15 87.8 114 43.0
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 6.7e-14 83.6 107 43.9
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 5.3e-11 73.9 111 45.0
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 2.1e-07 62.0 166 30.1
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 7.9e-07 60.1 89 40.4
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 7.9e-07 60.1 89 40.4
ATR0730G134 Amborella trichopoda HOM05D001439 ORTHO05D002726 5.1e-06 57.4 264 28.0
Ca_18589_v3 Cicer arietinum L. HOM05D001439 ORTHO05D002726 8.7e-06 56.6 271 25.5


User provided reference genes

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