Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 2.1e-123 445.7 220 100.0
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 1.3e-101 373.2 272 71.0
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 4.8e-99 364.8 270 71.1
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 4.8e-99 364.8 270 71.1
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 4.8e-99 364.8 270 71.1
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 4.8e-99 364.8 270 71.1
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 6.9e-98 360.9 270 70.4
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 1.4e-95 353.2 281 67.6
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 4.2e-95 351.7 219 79.0
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-95 351.3 276 67.4
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-95 351.3 276 67.4
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-95 351.3 276 67.4
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-95 351.3 276 67.4
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 9.3e-95 350.5 274 66.8
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.5e-94 348.6 273 66.7
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.5e-94 348.6 273 66.7
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.6e-94 348.2 273 66.3
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 4.6e-94 348.2 274 65.3
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 6.0e-94 347.8 272 65.8
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 6.0e-94 347.8 272 65.8
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 6.6e-93 344.4 278 64.7
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 2.1e-91 339.3 265 65.7
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 1.1e-90 337.0 260 66.9
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 1.8e-90 336.3 277 62.8
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 1.8e-90 336.3 277 62.8
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 1.8e-90 336.3 277 61.7
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 4.0e-90 335.1 239 70.3
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 4.5e-89 331.6 280 61.8
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 4.5e-89 331.6 280 61.8
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 4.5e-89 331.6 280 61.8
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 4.5e-89 331.6 280 61.8
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 5.8e-89 331.3 280 61.8
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 5.8e-89 331.3 280 61.8
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 5.8e-89 331.3 280 61.8
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 5.8e-89 331.3 280 61.8
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 5.8e-89 331.3 280 61.8
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 5.8e-89 331.3 280 61.8
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 5.8e-89 331.3 280 61.8
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 5.8e-89 331.3 280 61.8
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 7.6e-89 330.9 282 64.2
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.3e-88 330.1 220 76.8
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 3.8e-88 328.6 277 61.4
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 6.4e-88 327.8 280 61.4
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 1.9e-87 326.2 280 61.1
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-86 323.6 217 76.0
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 7.9e-86 320.9 214 72.9
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 7.9e-86 320.9 214 72.9
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 7.9e-86 320.9 214 72.9
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 7.9e-86 320.9 214 72.9
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 7.9e-86 320.9 214 72.9
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 1.6e-83 313.2 276 61.6
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 5.3e-82 308.1 243 67.5
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.5e-79 299.3 273 59.3
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 4.5e-73 278.5 256 58.2
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.3e-72 276.9 236 61.9
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 5.5e-71 271.6 225 63.6
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 2.5e-68 262.7 224 62.9
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 5.7e-68 261.5 276 55.4
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 3.7e-67 258.8 247 56.3
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 3.1e-66 255.8 249 55.0
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 4.1e-66 255.4 234 55.6
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 1.7e-64 250.0 224 60.7
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.7e-64 250.0 203 64.5
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 2.7e-62 242.7 156 77.6
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 4.7e-54 215.3 214 55.6
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 5.2e-53 211.8 177 64.4
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.7e-51 206.8 193 57.5
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 1.1e-50 204.1 110 86.4
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 2.4e-50 203.0 173 63.0
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.7e-49 198.0 106 85.8
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 8.5e-48 194.5 277 38.3
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 9.4e-47 191.0 163 63.2
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 9.4e-47 191.0 163 63.2
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 2.7e-46 189.5 105 81.9
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.0e-45 187.6 103 84.5
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.4e-45 187.2 110 84.5
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.4e-45 187.2 111 81.1
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.8e-45 186.8 103 83.5
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 1.8e-45 186.8 294 36.4
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.3e-45 186.4 148 66.2
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.0e-45 186.0 148 66.2
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 3.7e-43 179.1 136 66.2
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.1e-42 177.6 91 90.1
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.1e-42 177.6 91 90.1
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 1.1e-42 177.6 110 75.5
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 1.8e-42 176.8 131 70.2
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 2.4e-42 176.4 105 78.1
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 4.1e-42 175.6 110 80.0
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 3.5e-41 172.6 110 79.1
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 5.9e-41 171.8 144 61.8
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 4.2e-39 165.6 128 71.1
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 7.2e-39 164.9 146 61.6
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 2.1e-38 163.3 181 50.3
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 3.6e-38 162.5 103 76.7
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.8e-37 160.2 105 76.2
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 3.0e-37 159.5 143 58.7
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.6e-36 156.4 80 87.5
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 4.1e-34 149.1 78 84.6
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 4.1e-34 149.1 76 89.5
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.5e-33 146.0 78 83.3
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 3.5e-33 146.0 269 38.3
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 2.5e-31 139.8 92 69.6
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 4.0e-29 132.5 85 75.3
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 2.2e-27 126.7 60 93.3
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 8.3e-27 124.8 60 91.7
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-26 124.4 84 73.8
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-26 122.1 65 87.7
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 9.2e-26 121.3 60 88.3
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.6e-25 120.6 64 82.8
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 1.3e-24 117.5 142 45.8
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 4.3e-23 112.5 70 78.6
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.6e-22 110.5 59 84.7
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 2.1e-22 110.2 161 46.6
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.4e-21 107.5 85 67.1
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 4.0e-21 105.9 94 60.6
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.7e-19 99.4 54 90.7
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.9e-19 99.0 52 84.6
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 8.3e-19 98.2 54 87.0
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 7.0e-18 95.1 52 80.8
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 2.0e-17 93.6 67 65.7
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.7e-17 93.2 51 86.3
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.7e-17 93.2 54 85.2
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 7.8e-17 91.7 64 71.9
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 7.8e-17 91.7 47 91.5
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 1.0e-16 91.3 78 64.1
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 3.9e-16 89.4 53 77.4
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 1.9e-15 87.0 43 83.7
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 1.2e-14 84.3 51 76.5
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 1.4e-13 80.9 112 46.4
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 1.8e-13 80.5 54 66.7
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 3.4e-12 76.3 144 38.2
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 3.4e-12 76.3 49 73.5
Solyc02g150101.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 9.8e-12 74.7 56 69.6
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.4e-10 70.9 40 85.0
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 1.5e-07 60.8 97 43.3
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 4.3e-07 59.3 37 81.1
Solyc02g011730.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 5.6e-07 58.9 38 76.3
Nitab4.5_0007979g0090 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.6e-06 56.2 119 36.1
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 6.2e-06 55.5 29 89.7


User provided reference genes

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