Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 4.5e-121 438.0 225 100.0
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 7.5e-92 340.9 225 79.6
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 4.6e-73 278.5 225 70.2
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.0e-72 277.3 232 66.4
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.4e-69 266.2 202 67.3
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 2.6e-68 262.7 222 61.7
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 2.6e-68 262.7 215 64.2
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 7.6e-68 261.2 214 63.6
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.2e-67 259.6 218 64.7
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.4e-67 258.1 220 63.6
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 6.4e-67 258.1 227 64.3
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.4e-66 256.9 228 64.5
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.4e-66 256.9 211 64.0
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 1.4e-66 256.9 214 64.0
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.2e-66 255.4 219 61.6
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 9.3e-66 254.2 220 62.7
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.2e-65 253.8 202 63.9
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.1e-65 253.1 205 64.9
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 3.5e-65 252.3 222 62.2
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.6e-65 251.9 184 71.7
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 4.6e-65 251.9 201 64.7
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.0e-65 251.5 192 67.7
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 7.8e-65 251.1 205 63.4
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.0e-64 250.8 202 64.4
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 1.3e-64 250.4 212 63.2
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 1.7e-64 250.0 202 64.4
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 2.3e-64 249.6 220 60.0
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.3e-64 249.6 233 60.1
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 3.9e-64 248.8 192 66.1
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 6.6e-64 248.1 211 61.1
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 8.7e-64 247.7 236 61.0
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.1e-63 247.3 207 64.3
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.1e-63 247.3 219 59.8
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.5e-63 246.9 220 58.6
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.9e-63 246.5 213 62.4
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 3.3e-63 245.7 206 62.6
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 3.3e-63 245.7 186 67.2
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 3.3e-63 245.7 196 66.3
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 4.3e-63 245.4 210 61.9
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 2.1e-62 243.0 221 57.5
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 3.6e-62 242.3 221 58.4
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 4.8e-62 241.9 221 57.5
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 4.8e-62 241.9 217 58.5
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 6.2e-62 241.5 210 59.5
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 8.1e-62 241.1 205 61.0
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 8.1e-62 241.1 205 62.9
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.1e-61 240.7 196 65.3
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.1e-61 240.7 205 61.0
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 1.8e-61 240.0 213 60.1
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.8e-61 240.0 196 64.8
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 2.4e-61 239.6 211 60.7
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 3.1e-61 239.2 210 59.5
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 3.1e-61 239.2 208 60.6
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 4.0e-61 238.8 208 59.6
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 5.3e-61 238.4 210 59.0
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 5.3e-61 238.4 211 57.8
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 6.9e-61 238.0 209 60.8
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 9.0e-61 237.7 210 61.0
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 4.4e-60 235.3 187 67.9
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 4.4e-60 235.3 187 67.9
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 7.6e-60 234.6 203 59.1
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 9.9e-60 234.2 209 58.9
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 9.9e-60 234.2 220 59.5
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.3e-59 233.8 208 62.5
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.7e-59 233.4 206 60.7
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 2.9e-59 232.6 195 64.1
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 3.8e-59 232.3 222 57.7
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 3.8e-59 232.3 222 57.7
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.8e-59 232.3 225 55.1
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 3.8e-59 232.3 208 62.0
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 4.9e-59 231.9 205 61.0
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 6.4e-59 231.5 201 58.7
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 8.4e-59 231.1 221 58.4
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 1.1e-58 230.7 217 57.6
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 1.1e-58 230.7 217 57.6
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 1.1e-58 230.7 215 58.1
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 1.1e-58 230.7 203 60.1
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.1e-58 230.7 197 61.4
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 2.4e-58 229.6 206 59.2
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 2.4e-58 229.6 206 59.2
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.2e-58 229.2 222 55.4
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 3.2e-58 229.2 219 55.3
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 4.2e-58 228.8 197 59.9
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 5.4e-58 228.4 208 58.2
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 7.1e-58 228.0 198 60.6
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 2.1e-57 226.5 175 65.1
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.7e-57 226.1 202 58.4
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 2.7e-57 226.1 225 56.9
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 4.6e-57 225.3 205 58.5
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 4.6e-57 225.3 193 58.5
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.0e-56 224.2 210 54.8
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 2.3e-56 223.0 197 61.4
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 3.9e-56 222.2 212 57.1
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 5.1e-56 221.9 189 60.3
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 6.6e-56 221.5 201 57.2
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 6.6e-56 221.5 220 54.1
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 6.6e-56 221.5 197 58.9
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 6.6e-56 221.5 196 60.2
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 8.7e-56 221.1 199 59.3
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 8.7e-56 221.1 203 57.1
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.1e-55 220.7 215 59.1
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.5e-55 220.3 206 60.2
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 2.5e-55 219.5 194 62.4
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 2.5e-55 219.5 205 58.0
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 2.8e-54 216.1 204 57.8
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.8e-54 216.1 191 60.2
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 8.1e-54 214.5 214 57.0
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 1.4e-53 213.8 195 59.0
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.4e-53 213.0 194 59.3
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 3.1e-53 212.6 204 57.4
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.0e-53 212.2 199 55.8
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 5.3e-53 211.8 194 58.8
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 5.3e-53 211.8 195 57.4
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 4.5e-52 208.8 204 57.8
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 7.6e-52 208.0 221 52.0
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 6.4e-51 204.9 223 52.5
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.9e-50 203.4 212 54.2
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 7.1e-50 201.4 181 60.8
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 2.7e-49 199.5 244 46.3
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 6.0e-49 198.4 211 53.6
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.0e-48 197.6 202 54.5
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 2.3e-48 196.4 192 54.7
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.8e-46 189.5 167 58.7
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.9e-43 178.7 193 48.2
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 8.4e-43 177.9 206 51.5
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 7.1e-42 174.9 188 50.0
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 1.0e-40 171.0 191 49.7
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 6.7e-40 168.3 192 47.4
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 2.8e-38 162.9 164 53.7
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 6.1e-33 145.2 99 72.7
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 1.1e-31 141.0 100 69.0
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.3e-31 139.4 98 71.4
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 7.4e-31 138.3 119 61.3
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.2e-30 136.7 208 38.5
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.8e-30 135.6 110 62.7
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 1.8e-29 133.7 118 61.9
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.1e-29 132.9 154 46.8
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 4.1e-29 132.5 101 66.3
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 3.4e-28 129.4 119 58.0
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 7.7e-28 128.3 223 35.9
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.7e-27 127.1 119 55.5
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 2.2e-27 126.7 83 71.1
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 4.2e-26 122.5 193 37.3
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 4.6e-25 119.0 188 39.4
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 8.2e-22 108.2 82 65.9
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 9.4e-18 94.7 165 38.2
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 9.4e-18 94.7 72 61.1
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-17 94.4 82 56.1
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 2.4e-13 80.1 61 65.6
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 1.2e-12 77.8 73 58.9
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 6.1e-09 65.5 162 27.8
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 6.7e-08 62.0 63 52.4
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.7e-08 62.0 100 36.0
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 8.8e-08 61.6 41 65.9
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 8.8e-08 61.6 46 63.0
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 2.6e-07 60.1 60 51.7
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 3.3e-07 59.7 45 66.7
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 1.7e-06 57.4 60 50.0


User provided reference genes

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