Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 0.0e+00 1149.8 570 100.0
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 1.5e-224 783.1 570 73.5
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 1.5e-200 703.4 565 65.8
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 1.0e-198 697.2 573 64.4
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 4.4e-197 691.8 567 63.1
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 2.0e-194 682.9 571 64.1
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 2.0e-194 682.9 571 64.6
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 2.7e-194 682.6 565 62.7
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 3.5e-194 682.2 563 63.1
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.5e-192 676.0 572 62.2
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 4.3e-192 675.2 573 63.9
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 7.3e-192 674.5 559 62.8
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.2e-191 673.7 574 64.3
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 1.0e-190 670.6 572 63.3
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 1.0e-190 670.6 566 63.1
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 1.8e-190 669.8 564 64.5
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 2.0e-189 666.4 573 62.5
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 4.9e-188 661.8 564 63.7
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 7.0e-187 657.9 566 62.2
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 1.2e-186 657.1 566 62.4
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 2.0e-186 656.4 566 62.0
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 2.7e-186 656.0 569 61.3
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 4.6e-186 655.2 567 62.1
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 4.6e-186 655.2 567 63.1
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 1.0e-185 654.1 564 62.6
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 1.7e-185 653.3 566 63.1
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.7e-185 653.3 566 63.1
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 3.0e-185 652.5 571 62.0
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 1.5e-184 650.2 565 61.8
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.5e-184 649.4 566 61.3
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 3.3e-184 649.0 566 61.3
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.3e-184 648.7 566 61.3
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 4.3e-184 648.7 562 62.6
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 9.5e-184 647.5 566 62.5
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 1.2e-183 647.1 569 62.2
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 4.7e-183 645.2 566 61.1
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 6.2e-183 644.8 566 61.5
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 8.1e-183 644.4 566 61.3
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 2.3e-182 642.9 566 61.0
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 3.1e-182 642.5 565 61.6
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 3.1e-182 642.5 536 64.4
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 5.2e-182 641.7 572 61.9
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 5.2e-182 641.7 563 62.5
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 5.2e-182 641.7 569 60.3
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 5.2e-182 641.7 574 60.6
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 8.9e-182 641.0 563 62.3
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 1.5e-181 640.2 563 62.3
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 2.6e-181 639.4 569 61.2
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 2.6e-181 639.4 569 61.2
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 4.4e-181 638.6 563 62.3
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 4.4e-181 638.6 563 62.3
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 4.4e-181 638.6 536 64.6
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 5.8e-181 638.3 566 60.4
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 9.8e-181 637.5 563 62.2
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 1.3e-180 637.1 536 64.0
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 1.3e-180 637.1 578 60.9
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.7e-180 636.7 567 60.8
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.9e-180 635.2 566 60.1
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.1e-179 634.0 542 61.8
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 3.2e-179 632.5 570 61.1
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.1e-179 632.1 564 60.1
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 9.2e-179 630.9 567 60.0
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 9.2e-179 630.9 569 59.9
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 1.6e-178 630.2 572 61.0
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 3.5e-178 629.0 567 60.0
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.6e-178 628.6 560 59.8
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.0e-177 627.5 564 59.9
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 8.6e-177 624.4 570 58.9
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 1.9e-176 623.2 567 58.6
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.9e-176 623.2 564 59.4
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 2.5e-176 622.9 567 60.0
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 8.1e-175 617.8 572 58.6
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 8.1e-175 617.8 575 59.0
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 5.2e-174 615.1 542 60.5
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 2.0e-173 613.2 580 58.1
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 3.4e-173 612.5 560 58.9
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 3.4e-173 612.5 566 58.3
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 7.6e-173 611.3 580 59.7
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 1.7e-172 610.1 567 57.7
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.7e-172 610.1 580 57.8
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.1e-171 607.4 579 58.0
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 4.1e-171 605.5 572 57.3
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 5.4e-171 605.1 565 58.2
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.1e-171 604.7 555 58.0
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 9.2e-171 604.4 555 58.0
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 7.8e-170 601.3 565 57.0
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 7.8e-170 601.3 578 57.3
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.0e-169 600.9 556 57.9
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.0e-169 600.9 566 58.5
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 1.7e-169 600.1 559 56.0
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 6.6e-169 598.2 569 59.2
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 8.6e-169 597.8 568 58.8
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.9e-168 596.7 580 58.3
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 1.2e-167 594.0 581 57.8
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 1.6e-167 593.6 578 57.8
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 2.1e-167 593.2 580 58.4
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.4e-166 590.5 566 56.7
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 3.1e-166 589.3 571 55.7
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.2e-165 587.4 571 55.7
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 7.6e-165 584.7 580 56.6
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.3e-164 583.9 580 57.1
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 1.7e-164 583.6 572 56.1
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 2.2e-164 583.2 568 57.7
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 6.4e-164 581.6 565 56.8
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 8.4e-164 581.3 578 55.9
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 8.4e-164 581.3 571 55.3
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 1.1e-163 580.9 572 54.5
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 1.9e-163 580.1 580 56.6
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 7.8e-162 574.7 564 56.2
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.1e-160 570.9 575 55.8
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.3e-159 567.4 566 53.7
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 5.3e-158 562.0 493 60.4
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 9.0e-158 561.2 560 55.0
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 4.5e-157 558.9 576 54.0
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.4e-155 553.9 540 55.0
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 6.7e-153 545.0 564 52.8
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 9.9e-149 531.2 549 53.9
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 9.9e-149 531.2 491 59.3
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 3.8e-148 529.3 572 52.1
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 2.2e-140 503.4 571 52.7
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.6e-138 497.3 535 50.5
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.1e-135 486.9 559 49.7
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 6.5e-132 475.3 511 52.8
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 1.6e-130 470.7 482 54.1
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 5.1e-129 465.7 473 55.0
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 1.1e-126 458.0 522 47.7
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.1e-120 438.0 456 52.2
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 7.4e-120 435.3 517 47.4
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.7e-119 434.1 535 45.8
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 3.4e-117 426.4 545 45.7
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 3.4e-117 426.4 555 43.2
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 3.7e-111 406.4 514 45.7
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 1.1e-110 404.8 443 51.9
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.5e-100 369.0 455 47.0
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 5.2e-89 332.8 330 53.6
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 3.3e-83 313.5 255 64.7
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.3e-79 301.6 279 58.1
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.2e-77 295.0 278 57.2
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 1.1e-70 271.9 377 41.9
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 8.6e-68 262.3 199 65.8
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 1.6e-66 258.1 547 34.0
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 4.4e-64 250.0 269 53.9
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 6.2e-50 203.0 145 69.7
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 2.4e-49 201.1 139 71.2
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 2.3e-36 157.9 94 83.0
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 8.4e-31 139.4 127 55.9
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 1.3e-28 132.1 126 57.1
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 3.8e-23 114.0 61 93.4
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 7.4e-11 73.2 56 62.5


User provided reference genes

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