Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 1.0e-99 366.7 179 100.0
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 1.2e-79 300.1 173 80.3
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 4.4e-79 298.1 167 82.6
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 4.2e-77 291.6 169 79.9
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 1.2e-76 290.0 166 79.5
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 1.2e-76 290.0 174 76.4
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 1.2e-76 290.0 178 74.2
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 1.6e-76 289.7 169 79.3
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 3.5e-76 288.5 167 79.6
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 4.6e-76 288.1 173 75.7
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 4.6e-76 288.1 173 78.6
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 4.6e-76 288.1 165 81.2
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 7.8e-76 287.3 173 75.7
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.3e-75 286.6 165 79.4
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 2.3e-75 285.8 173 75.7
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 2.3e-75 285.8 173 78.0
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 2.3e-75 285.8 163 81.6
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 3.0e-75 285.4 173 75.7
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 3.0e-75 285.4 175 77.7
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 3.9e-75 285.0 161 82.0
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 3.9e-75 285.0 170 76.5
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 3.9e-75 285.0 163 79.1
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 8.7e-75 283.9 171 76.6
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 8.7e-75 283.9 166 80.1
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 1.1e-74 283.5 161 81.4
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 1.9e-74 282.7 170 77.1
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 1.9e-74 282.7 165 78.2
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 2.5e-74 282.3 177 73.4
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 2.5e-74 282.3 176 73.3
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 3.3e-74 282.0 172 76.2
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 4.3e-74 281.6 161 82.0
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 7.3e-74 280.8 163 79.8
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 7.3e-74 280.8 170 76.5
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 1.3e-73 280.0 172 79.1
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 2.1e-73 279.3 170 75.9
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 2.1e-73 279.3 164 78.7
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 2.1e-73 279.3 166 75.9
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 2.8e-73 278.9 171 76.6
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 4.8e-73 278.1 164 79.3
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 6.2e-73 277.7 163 77.3
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 6.2e-73 277.7 157 82.2
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 6.2e-73 277.7 164 79.3
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 6.2e-73 277.7 173 72.8
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 1.1e-72 276.9 170 76.5
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 1.8e-72 276.2 161 80.7
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 2.4e-72 275.8 170 75.9
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 4.0e-72 275.0 169 75.1
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 4.0e-72 275.0 164 75.6
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 6.9e-72 274.2 167 76.6
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 9.0e-72 273.9 169 76.9
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 1.2e-71 273.5 169 75.7
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 1.2e-71 273.5 170 75.3
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 1.5e-71 273.1 170 75.9
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 1.5e-71 273.1 173 74.6
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 2.0e-71 272.7 165 77.6
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 2.0e-71 272.7 163 77.3
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 2.0e-71 272.7 167 74.3
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 2.0e-71 272.7 169 76.9
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 2.6e-71 272.3 165 75.2
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 9.9e-71 270.4 167 73.7
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 1.7e-70 269.6 168 73.2
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 2.9e-70 268.9 160 76.9
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 4.9e-70 268.1 172 73.8
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 1.4e-69 266.5 168 72.6
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 4.2e-69 265.0 168 72.0
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 5.4e-69 264.6 170 71.2
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 7.1e-69 264.2 164 72.6
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 1.6e-68 263.1 168 72.0
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 1.6e-68 263.1 171 70.8
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 2.7e-68 262.3 162 76.5
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 3.5e-68 261.9 167 71.9
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 7.9e-68 260.8 161 73.3
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 1.0e-67 260.4 160 74.4
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 1.0e-67 260.4 160 74.4
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 1.0e-67 260.4 160 76.2
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 1.8e-67 259.6 172 70.3
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 3.9e-67 258.5 172 71.5
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 5.1e-67 258.1 174 68.4
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 4.0e-64 248.4 166 69.9
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 3.4e-63 245.4 161 73.3
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 2.5e-61 239.2 169 69.8
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 6.0e-60 234.6 165 63.6
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 6.0e-60 234.6 165 63.6
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 6.0e-60 234.6 165 63.6
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 1.3e-59 233.4 165 63.0
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 2.3e-59 232.6 165 63.0
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 3.9e-59 231.9 137 78.1
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 3.9e-59 231.9 161 64.6
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 2.5e-58 229.2 161 64.0
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 2.5e-58 229.2 161 64.0
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 1.3e-57 226.9 165 61.8
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 1.6e-57 226.5 169 59.8
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 1.6e-57 226.5 157 64.3
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 6.2e-57 224.6 175 61.1
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 1.8e-56 223.0 166 63.9
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 2.4e-56 222.6 167 62.3
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 3.1e-56 222.2 171 62.0
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 7.6e-55 217.6 112 94.6
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 3.5e-52 208.8 131 73.3
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.1e-50 203.8 144 65.3
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 1.8e-48 196.4 166 53.6
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 4.2e-45 185.3 126 72.2
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 5.1e-43 178.3 166 53.0
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 1.5e-42 176.8 109 75.2
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 7.4e-42 174.5 116 72.4
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 1.3e-41 173.7 113 74.3
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 4.8e-41 171.8 165 50.9
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 2.6e-39 166.0 111 71.2
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.4e-37 160.2 106 71.7
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 3.6e-36 155.6 166 44.0
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 6.7e-35 151.4 90 75.6
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 6.3e-33 144.8 127 53.5
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 8.0e-28 127.9 121 50.4
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 1.6e-23 113.6 161 38.5
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 2.0e-23 113.2 201 30.3
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 3.0e-19 99.4 164 36.0
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 2.0e-18 96.7 54 75.9
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 3.7e-17 92.4 54 74.1
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 3.1e-16 89.4 54 72.2
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 9.1e-16 87.8 60 65.0
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 9.1e-16 87.8 60 65.0
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 2.1e-12 76.6 50 66.0
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 4.1e-08 62.4 38 73.7
Sabra16G0183400 Salix brachista HOM05D002857 ORTHO05D008347 1.0e-06 57.8 52 57.7


User provided reference genes

Program Settings