Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 2.2e-140 502.3 253 100.0
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 1.1e-62 244.2 295 48.5
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.7e-60 236.9 216 59.3
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.9e-60 236.1 300 49.3
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 2.9e-60 236.1 290 47.2
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 6.5e-60 235.0 301 46.8
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.9e-59 233.4 294 46.9
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 7.2e-59 231.5 296 48.0
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 9.4e-59 231.1 300 46.0
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 1.6e-58 230.3 294 46.3
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.7e-58 229.6 310 45.5
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 6.1e-58 228.4 305 45.6
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.0e-57 227.6 223 58.3
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 1.4e-57 227.3 294 45.9
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 6.8e-57 224.9 295 45.8
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.8e-57 224.6 295 47.1
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 8.8e-57 224.6 300 46.0
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 1.2e-56 224.2 211 58.3
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.2e-56 224.2 294 45.2
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.5e-56 223.8 223 57.0
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.0e-56 223.4 303 46.2
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 3.4e-56 222.6 294 45.6
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 4.4e-56 222.2 219 55.7
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 5.7e-56 221.9 275 47.3
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 9.8e-56 221.1 294 44.9
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 1.3e-55 220.7 294 44.9
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.7e-55 220.3 301 46.5
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 1.7e-55 220.3 219 55.7
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 2.8e-55 219.5 287 46.0
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 6.3e-55 218.4 295 46.1
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 8.3e-55 218.0 303 45.2
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.1e-54 217.6 304 47.0
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.8e-54 216.9 295 45.4
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.8e-54 216.9 304 47.0
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 2.4e-54 216.5 294 45.9
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 2.4e-54 216.5 302 45.4
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 3.1e-54 216.1 303 44.9
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 4.1e-54 215.7 303 45.9
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 4.1e-54 215.7 222 54.5
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 7.0e-54 214.9 222 54.1
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 9.1e-54 214.5 301 44.5
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 9.1e-54 214.5 295 46.1
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.6e-53 213.8 300 44.0
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 2.0e-53 213.4 303 44.9
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 3.5e-53 212.6 303 44.9
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 3.5e-53 212.6 239 52.3
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 3.5e-53 212.6 296 46.3
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.0e-52 211.1 294 44.2
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 1.3e-52 210.7 294 43.9
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 2.9e-52 209.5 294 44.9
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 5.0e-52 208.8 303 44.6
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 8.6e-52 208.0 295 44.4
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.5e-51 207.2 295 44.1
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 1.9e-51 206.8 222 51.8
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 2.5e-51 206.5 295 44.4
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 2.5e-51 206.5 267 46.1
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 5.5e-51 205.3 229 52.4
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 7.2e-51 204.9 295 44.4
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 7.2e-51 204.9 294 43.2
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 9.5e-51 204.5 297 44.1
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 9.5e-51 204.5 301 43.5
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 2.8e-50 203.0 295 43.7
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 1.4e-49 200.7 302 42.7
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 1.8e-49 200.3 294 43.9
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 1.8e-49 200.3 297 43.8
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 4.0e-49 199.1 301 43.9
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 8.9e-49 198.0 295 43.4
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 8.9e-49 198.0 300 42.3
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.2e-48 197.6 295 44.1
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.5e-48 197.2 302 42.4
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 1.5e-48 197.2 223 52.0
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 3.4e-48 196.1 221 52.5
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 4.4e-48 195.7 296 42.6
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 7.5e-48 194.9 295 43.4
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.3e-47 194.1 294 42.2
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.3e-47 194.1 294 41.8
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 3.7e-47 192.6 295 42.7
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 3.7e-47 192.6 324 39.5
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 4.9e-47 192.2 209 54.1
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 6.3e-47 191.8 295 43.1
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 1.4e-46 190.7 295 42.4
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.8e-46 190.3 215 50.7
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.8e-46 190.3 215 50.7
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 9.2e-46 188.0 302 42.1
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.9e-44 183.0 223 50.7
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 3.8e-44 182.6 290 40.7
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 5.0e-44 182.2 294 40.8
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 6.6e-44 181.8 274 41.6
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 6.6e-44 181.8 296 41.2
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.1e-43 181.0 264 43.2
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 1.1e-43 181.0 296 40.5
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 2.5e-43 179.9 315 39.0
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 1.6e-42 177.2 273 41.0
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.6e-42 177.2 302 40.7
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 2.1e-42 176.8 201 50.7
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 2.8e-42 176.4 161 59.6
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.8e-42 176.4 222 48.2
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 3.6e-42 176.0 311 39.9
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 3.6e-42 176.0 296 40.9
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 3.6e-42 176.0 221 47.1
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 6.1e-42 175.3 287 41.1
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 8.0e-42 174.9 327 37.9
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 2.3e-41 173.3 298 39.9
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 2.3e-41 173.3 227 47.1
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 3.0e-41 172.9 300 41.0
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 4.0e-41 172.6 226 47.8
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 5.2e-41 172.2 224 47.3
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 5.2e-41 172.2 221 46.2
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 6.8e-41 171.8 300 41.0
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.2e-40 171.0 288 40.6
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 3.4e-40 169.5 302 38.4
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 3.4e-40 169.5 195 49.7
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 3.4e-40 169.5 195 49.7
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.4e-40 169.1 307 38.8
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.3e-39 167.5 307 38.4
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 1.7e-39 167.2 221 48.0
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 2.2e-39 166.8 194 50.5
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 2.2e-39 166.8 194 50.5
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 3.7e-39 166.0 241 41.9
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.4e-38 164.1 216 46.8
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.4e-38 163.3 224 46.0
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 2.4e-38 163.3 295 39.0
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 7.8e-37 158.3 292 40.1
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 5.6e-35 152.1 208 44.2
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.4e-33 147.5 342 35.4
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.4e-33 147.5 342 35.4
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.2e-32 144.4 193 48.2
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 7.5e-32 141.7 295 36.9
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 9.8e-32 141.4 233 41.6
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 1.4e-30 137.5 208 40.9
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 4.1e-30 136.0 209 42.6
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 1.3e-28 131.0 242 38.8
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 1.7e-28 130.6 295 35.3
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 3.0e-28 129.8 126 57.9
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-27 127.9 137 53.3
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.3e-25 120.2 122 54.1
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 4.4e-24 115.9 197 40.1
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 9.9e-24 114.8 145 43.4
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 2.1e-21 107.1 193 37.8
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 6.0e-21 105.5 157 44.6
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 4.3e-19 99.4 137 43.8
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 5.8e-16 89.0 131 44.3
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.1e-09 66.6 78 43.6
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 7.6e-08 62.0 55 58.2
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 7.6e-08 62.0 55 58.2
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 3.8e-07 59.7 128 33.6
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 1.4e-06 57.8 255 25.9


User provided reference genes

Program Settings