Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu009879.2 Olea europaea HOM05D004052 ORTHO05D004694 3.5e-110 401.7 218 100.0
Oeu006133.1 Olea europaea HOM05D004052 ORTHO05D004694 4.5e-65 251.9 242 65.3
Oeu001302.1 Olea europaea HOM05D004052 ORTHO05D004694 1.8e-37 160.2 241 46.1
GSVIVG01038086001 Vitis vinifera HOM05D004052 ORTHO05D004694 6.5e-32 141.7 237 44.3
MSTRG.12848 Avicennia marina HOM05D004052 ORTHO05D004694 5.5e-31 138.7 258 39.9
Eucgr.L01015 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.1e-28 131.0 236 44.5
Potri.001G377900 Populus trichocarpa HOM05D004052 ORTHO05D004694 1.1e-28 131.0 167 50.9
Eucgr.E02731 Eucalyptus grandis HOM05D004052 ORTHO05D004694 2.0e-28 130.2 234 44.0
FvH4_3g16600 Fragaria vesca HOM05D004052 ORTHO05D004694 2.0e-28 130.2 209 43.1
FAN11G2946 Fragaria x ananassa HOM05D004052 ORTHO05D004694 2.0e-28 130.2 209 43.1
FAN21G2550 Fragaria x ananassa HOM05D004052 ORTHO05D004694 3.3e-28 129.4 209 43.1
FAN16G0069 Fragaria x ananassa HOM05D004052 ORTHO05D004694 7.4e-28 128.3 209 43.1
Eucgr.E02738 Eucalyptus grandis HOM05D004052 ORTHO05D004694 9.7e-28 127.9 217 44.7
Prupe.4G148800 Prunus persica HOM05D004052 ORTHO05D004694 2.2e-27 126.7 217 41.9
Manes.03G091016 Manihot esculenta HOM05D004052 ORTHO05D004694 4.8e-27 125.6 191 47.6
Cpa.g.sc77.96 Carica papaya HOM05D004052 ORTHO05D004694 8.2e-27 124.8 232 41.4
QL04p070259 Quercus lobata HOM05D004052 ORTHO05D004694 6.9e-26 121.7 231 42.9
RcHm_v2.0_Chr5g0027741 Rosa chinensis HOM05D004052 ORTHO05D004694 6.9e-26 121.7 252 37.3
Sabra16G0248900 Salix brachista HOM05D004052 ORTHO05D004694 6.9e-26 121.7 191 45.5
DCAR_019621 Daucus carota HOM05D004052 ORTHO05D004694 9.1e-26 121.3 188 46.3
MD05G1208600 Malus domestica HOM05D004052 ORTHO05D004694 1.2e-25 120.9 214 41.1
Eucgr.L01921 Eucalyptus grandis HOM05D004052 ORTHO05D004694 2.0e-25 120.2 237 41.4
ECA234G3832 Erigeron canadensis HOM05D004052 ORTHO05D004694 2.5e-23 113.2 232 38.8
TAR629G3304 Trochodendron aralioides HOM05D004052 ORTHO05D004694 2.5e-23 113.2 258 37.6
Ca_03392_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 5.5e-23 112.1 234 37.2
Ca_29679_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 5.5e-23 112.1 234 37.2
Nitab4.5_0001662g0050 Nicotiana tabacum HOM05D004052 ORTHO05D004694 1.6e-22 110.5 262 36.3
Gorai.009G359700 Gossypium raimondii HOM05D004052 ORTHO05D004694 2.7e-22 109.8 205 41.5
Manes.15G101600 Manihot esculenta HOM05D004052 ORTHO05D004694 2.7e-22 109.8 199 40.2
HanXRQChr10g0305751 Helianthus annuus HOM05D004052 ORTHO05D004694 7.9e-22 108.2 178 43.3
Atru.chr2.1894 Acer truncatum HOM05D004052 ORTHO05D004694 1.4e-21 107.5 200 40.5
Oeu020015.2 Olea europaea HOM05D004052 ORTHO05D004694 3.9e-21 105.9 171 44.4
Cc05_g10320 Coffea canephora HOM05D004052 ORTHO05D004694 5.2e-21 105.5 269 34.2
Dinv26667 Davidia involucrata HOM05D004052 ORTHO05D004694 5.2e-21 105.5 199 42.7
HanXRQChr12g0373561 Helianthus annuus HOM05D004052 ORTHO05D004694 6.7e-21 105.1 181 38.1
Gohir.A04G046520 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.1e-20 104.4 217 40.1
Migut.M00589 Erythranthe guttata HOM05D004052 ORTHO05D004694 9.7e-20 101.3 242 37.6
Lsat_1_v5_gn_5_125041 Lactuca sativa HOM05D004052 ORTHO05D004694 9.7e-20 101.3 241 38.6
MSTRG.6718 Avicennia marina HOM05D004052 ORTHO05D004694 3.7e-19 99.4 270 35.9
MD10G1195100 Malus domestica HOM05D004052 ORTHO05D004694 8.2e-19 98.2 243 37.9
Nn3g20784 Nelumbo nucifera HOM05D004052 ORTHO05D004694 1.1e-18 97.8 230 38.3
Glyma.13G259200 Glycine max HOM05D004052 ORTHO05D004694 1.4e-18 97.4 258 34.5
CSS0033427 Camellia sinensis var. sinensis HOM05D004052 ORTHO05D004694 3.1e-18 96.3 212 38.7
CANSAT94G0014 Cannabis sativa HOM05D004052 ORTHO05D004694 3.1e-18 96.3 213 37.6
Peaxi162Scf00111g00086 Petunia axillaris HOM05D004052 ORTHO05D004694 5.3e-18 95.5 225 37.8
Dinv13312 Davidia involucrata HOM05D004052 ORTHO05D004694 7.0e-18 95.1 207 41.5
Ah.06g187480 Amaranthus hybridus HOM05D004052 ORTHO05D004694 3.5e-17 92.8 201 40.3
PSO675G8138 Papaver somniferum HOM05D004052 ORTHO05D004694 4.5e-17 92.4 236 34.3
PSO541G0468 Papaver somniferum HOM05D004052 ORTHO05D004694 5.9e-17 92.0 196 37.8
MBI10_g30421_MAGBIO Magnolia biondii HOM05D004052 ORTHO05D004694 1.3e-16 90.9 249 34.1
unitig_46.g18300 Utricularia gibba HOM05D004052 ORTHO05D004694 1.7e-16 90.5 227 33.9
Migut.H02078 Erythranthe guttata HOM05D004052 ORTHO05D004694 2.2e-16 90.1 176 38.6
EL10Ac4g08490 Beta vulgaris HOM05D004052 ORTHO05D004694 3.8e-16 89.4 242 34.3
A06p13030 Brassica napus HOM05D004052 ORTHO05D004694 3.8e-16 89.4 208 33.2
Ca_01645_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 8.5e-16 88.2 235 33.2
Ciclev10020573m.g Citrus clementina HOM05D004052 ORTHO05D004694 8.5e-16 88.2 225 37.3
Aqoxy7G03971 Aquilegia oxysepala HOM05D004052 ORTHO05D004694 1.1e-15 87.8 246 32.9
Hma1.2p1_1456F.1_g284600 Hydrangea macrophylla HOM05D004052 ORTHO05D004694 2.5e-15 86.7 251 35.1
vmacro12015 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 2.5e-15 86.7 194 38.1
Gohir.A07G155810 Gossypium hirsutum HOM05D004052 ORTHO05D004694 4.2e-15 85.9 211 33.2
Phvul.005G060700 Phaseolus vulgaris HOM05D004052 ORTHO05D004694 5.5e-15 85.5 258 34.1
PGSC0003DMG400027647 Solanum tuberosum HOM05D004052 ORTHO05D004694 5.5e-15 85.5 252 34.5
Actinidia04591 Actinidia chinensis HOM05D004052 ORTHO05D004694 1.2e-14 84.3 209 36.8
Ah.04g163830 Amaranthus hybridus HOM05D004052 ORTHO05D004694 1.2e-14 84.3 199 37.2
AT1G78430 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 2.1e-14 83.6 180 38.9
Haze_08491 Corylus avellana HOM05D004052 ORTHO05D004694 2.1e-14 83.6 207 37.2
CAN.G1003.5 Capsicum annuum HOM05D004052 ORTHO05D004694 2.7e-14 83.2 240 35.4
Actinidia12841 Actinidia chinensis HOM05D004052 ORTHO05D004694 4.7e-14 82.4 236 33.9
Nitab4.5_0000639g0180 Nicotiana tabacum HOM05D004052 ORTHO05D004694 1.0e-13 81.3 179 40.2
Rhsim06G0184900 Rhododendron simsii HOM05D004052 ORTHO05D004694 1.4e-13 80.9 216 36.1
Gorai.002G038800 Gossypium raimondii HOM05D004052 ORTHO05D004694 1.8e-13 80.5 252 32.9
Glyma.15G248900 Glycine max HOM05D004052 ORTHO05D004694 2.3e-13 80.1 258 31.8
BcaC07g41402 Brassica carinata HOM05D004052 ORTHO05D004694 3.0e-13 79.7 158 38.6
Cfa019455 Carpinus fangiana HOM05D004052 ORTHO05D004694 4.0e-13 79.3 208 37.0
FAN25G3263 Fragaria x ananassa HOM05D004052 ORTHO05D004694 4.0e-13 79.3 71 64.8
Gohir.D01G029700 Gossypium hirsutum HOM05D004052 ORTHO05D004694 6.7e-13 78.6 255 31.0
RhsimUnG0204400 Rhododendron simsii HOM05D004052 ORTHO05D004694 1.5e-12 77.4 218 33.9
Actinidia35175 Actinidia chinensis HOM05D004052 ORTHO05D004694 2.0e-12 77.0 239 34.7
Aa31LG4G2530 Aethionema arabicum HOM05D004052 ORTHO05D004694 3.3e-12 76.3 134 37.3
Duzib213G0683 Durio zibethinus HOM05D004052 ORTHO05D004694 5.7e-12 75.5 212 32.5
MD14G1047200 Malus domestica HOM05D004052 ORTHO05D004694 5.7e-12 75.5 156 42.9
vmacro09432 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 5.7e-12 75.5 194 36.1
Lj3g0022433 Lotus japonicus HOM05D004052 ORTHO05D004694 1.3e-11 74.3 257 33.1
Aa31LG7G1980 Aethionema arabicum HOM05D004052 ORTHO05D004694 1.7e-11 73.9 217 33.6
Thecc.07G146300 Theobroma cacao HOM05D004052 ORTHO05D004694 2.2e-11 73.6 200 32.5
Nn4g26569 Nelumbo nucifera HOM05D004052 ORTHO05D004694 3.7e-11 72.8 263 31.9
A09p60580 Brassica napus HOM05D004052 ORTHO05D004694 6.3e-11 72.0 157 36.3
AL1G29350 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 8.2e-11 71.6 260 30.4
Sopen07g029990 Solanum pennellii HOM05D004052 ORTHO05D004694 1.1e-10 71.2 244 31.6
BraA06t24462Z Brassica rapa HOM05D004052 ORTHO05D004694 1.8e-10 70.5 211 29.9
Gohir.A01G041900 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.8e-10 70.5 255 30.2
BcaC05g25666 Brassica carinata HOM05D004052 ORTHO05D004694 3.1e-10 69.7 178 33.7
BolC6t38209H Brassica oleracea HOM05D004052 ORTHO05D004694 3.1e-10 69.7 235 31.9
AL2G38800 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 4.1e-10 69.3 190 34.7
CARHR017680 Cardamine hirsuta HOM05D004052 ORTHO05D004694 4.1e-10 69.3 198 32.8
Medtr2g070730 Medicago truncatula HOM05D004052 ORTHO05D004694 4.1e-10 69.3 210 32.4
PGR031G1077 Punica granatum HOM05D004052 ORTHO05D004694 4.1e-10 69.3 241 30.7
A07p27520 Brassica napus HOM05D004052 ORTHO05D004694 7.0e-10 68.6 235 31.5
C08p44040 Brassica napus HOM05D004052 ORTHO05D004694 7.0e-10 68.6 157 35.7
BraA07t30394Z Brassica rapa HOM05D004052 ORTHO05D004694 7.0e-10 68.6 235 31.5
TAR627G0253 Trochodendron aralioides HOM05D004052 ORTHO05D004694 7.0e-10 68.6 197 32.5
BraA09t41428Z Brassica rapa HOM05D004052 ORTHO05D004694 1.2e-09 67.8 157 35.0
CiPaw.12G045700 Carya illinoinensis HOM05D004052 ORTHO05D004694 1.2e-09 67.8 229 33.6
COL.COLO4_17418 Corchorus olitorius HOM05D004052 ORTHO05D004694 1.2e-09 67.8 212 32.1
Solyc07g056650.4 Solanum lycopersicum HOM05D004052 ORTHO05D004694 1.2e-09 67.8 244 30.7
BcaC07g41439 Brassica carinata HOM05D004052 ORTHO05D004694 1.6e-09 67.4 157 35.0
BolC8t51952H Brassica oleracea HOM05D004052 ORTHO05D004694 1.6e-09 67.4 157 35.0
C05p15490 Brassica napus HOM05D004052 ORTHO05D004694 2.0e-09 67.0 157 34.4
Eucgr.F03205 Eucalyptus grandis HOM05D004052 ORTHO05D004694 2.0e-09 67.0 256 31.2
HPP92_020289 Vanilla planifolia HOM05D004052 ORTHO05D004694 2.0e-09 67.0 88 50.0
Lalb_Chr25g0285401 Lupinus albus HOM05D004052 ORTHO05D004694 2.7e-09 66.6 192 34.9
Sp1g15260 Schrenkiella parvula HOM05D004052 ORTHO05D004694 2.7e-09 66.6 171 33.9
BolC5t30258H Brassica oleracea HOM05D004052 ORTHO05D004694 4.5e-09 65.9 163 35.0
Thhalv10019440m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 4.5e-09 65.9 205 33.2
Lj8P142T42 Lonicera japonica HOM05D004052 ORTHO05D004694 1.0e-08 64.7 204 31.9
Nitab4.5_0002495g0040 Nicotiana tabacum HOM05D004052 ORTHO05D004694 1.0e-08 64.7 258 29.5
BcaB02g07171 Brassica carinata HOM05D004052 ORTHO05D004694 1.7e-08 63.9 194 32.0
CANSAT54G0448 Cannabis sativa HOM05D000666 ORTHO05D001727 1.7e-08 63.9 174 30.5
unitig_747.g21598 Utricularia gibba HOM05D004052 ORTHO05D004694 6.5e-08 62.0 185 34.6
Sc03g0007700 Simmondsia chinensis HOM05D004052 ORTHO05D004694 8.5e-08 61.6 54 59.3
AUR62037969 Chenopodium quinoa HOM05D004052 ORTHO05D004694 1.5e-07 60.8 247 29.6
THA.LOC104812292 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 1.5e-07 60.8 224 30.8
C06p30460 Brassica napus HOM05D004052 ORTHO05D004694 1.9e-07 60.5 235 30.6
CDE02G2317 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 1.9e-07 60.5 217 28.6
Migut.N02628 Erythranthe guttata HOM05D000666 ORTHO05D001727 3.2e-07 59.7 106 34.0
SGA_v2.0_scaffold4G02131 Striga asiatica HOM05D004052 ORTHO05D004694 4.2e-07 59.3 208 31.2
Ca_01435_v3 Cicer arietinum L. HOM05D000666 ORTHO05D001727 5.5e-07 58.9 177 32.8
Duzib268G0054 Durio zibethinus HOM05D004052 ORTHO05D004694 5.5e-07 58.9 219 29.2
Peaxi162Scf00000g00572 Petunia axillaris HOM05D004052 ORTHO05D004694 5.5e-07 58.9 257 30.4
RcHm_v2.0_Chr3g0468851 Rosa chinensis HOM05D000666 ORTHO05D001727 7.2e-07 58.5 182 30.8
Psat1g001080 Pisum sativum HOM05D004052 ORTHO05D004694 1.2e-06 57.8 176 32.4
CDE10G0657 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 1.6e-06 57.4 170 36.5
Nn3g16362 Nelumbo nucifera HOM05D004052 ORTHO05D004694 1.6e-06 57.4 129 35.7
Psat3g044520 Pisum sativum HOM05D000666 ORTHO05D001727 1.6e-06 57.4 153 32.0
TPR.G22987 Trifolium pratense HOM05D004052 ORTHO05D004694 1.6e-06 57.4 249 28.9
MD03G1110200 Malus domestica HOM05D000666 ORTHO05D001727 2.1e-06 57.0 182 29.1
VMungo1080G1119 Vigna mungo HOM05D004052 ORTHO05D004694 2.7e-06 56.6 258 29.1
ATR1159G041 Amborella trichopoda HOM05D000666 ORTHO05D001727 3.6e-06 56.2 126 39.7
arahy.Tifrunner.gnm1.ann1.15VG0N Arachis hypogaea HOM05D004052 ORTHO05D004694 3.6e-06 56.2 223 31.8
HanXRQChr07g0195661 Helianthus annuus HOM05D000666 ORTHO05D001727 4.7e-06 55.8 170 27.1
TPR.G26614 Trifolium pratense HOM05D004052 ORTHO05D004694 4.7e-06 55.8 248 28.6
Lsat_1_v5_gn_2_109580 Lactuca sativa HOM05D000666 ORTHO05D001727 6.1e-06 55.5 129 34.9
Glyma.19G178900 Glycine max HOM05D000666 ORTHO05D001727 8.0e-06 55.1 167 26.3


User provided reference genes

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