Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 1.7e-120 436.0 219 100.0
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 7.3e-84 314.3 219 75.8
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 1.9e-55 219.9 222 58.6
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 3.9e-53 212.2 223 58.3
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 1.1e-52 210.7 230 55.7
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 5.7e-52 208.4 240 55.0
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 4.1e-50 202.2 229 55.0
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 1.4e-47 193.7 218 54.6
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 6.1e-46 188.3 228 55.7
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 2.2e-43 179.9 223 53.4
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 8.2e-43 177.9 219 51.1
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 1.4e-42 177.2 233 48.5
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 5.3e-42 175.3 223 52.5
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 5.3e-42 175.3 227 48.9
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 6.9e-42 174.9 231 51.5
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 9.1e-42 174.5 215 53.5
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 2.6e-41 172.9 233 49.4
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 2.6e-41 172.9 227 51.1
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 7.7e-41 171.4 233 51.1
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.0e-40 171.0 225 50.7
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.4e-39 167.2 230 48.7
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 2.5e-39 166.4 240 47.9
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 2.5e-39 166.4 235 49.8
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 4.2e-39 165.6 231 47.2
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 1.6e-38 163.7 239 47.7
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.6e-38 163.7 234 47.4
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.1e-38 163.3 229 47.6
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 2.7e-38 162.9 218 47.2
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 3.6e-38 162.5 228 48.2
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 3.6e-38 162.5 221 50.2
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 3.6e-38 162.5 218 49.5
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 1.0e-37 161.0 251 47.4
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 2.3e-37 159.8 261 45.6
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 2.3e-37 159.8 237 46.0
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 3.0e-37 159.5 243 45.7
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 1.1e-36 157.5 240 47.5
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 2.6e-36 156.4 231 46.8
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 3.3e-36 156.0 244 43.0
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 4.4e-36 155.6 249 43.8
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 5.7e-36 155.2 266 41.7
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 7.4e-36 154.8 240 45.8
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 7.4e-36 154.8 245 46.5
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 7.4e-36 154.8 248 45.6
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 2.2e-35 153.3 238 44.5
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 2.8e-35 152.9 226 49.1
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 2.8e-35 152.9 238 45.8
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 4.8e-35 152.1 262 43.5
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 6.3e-35 151.8 227 47.1
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 8.2e-35 151.4 241 44.0
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 8.2e-35 151.4 250 44.4
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 2.4e-34 149.8 258 43.4
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 4.1e-34 149.1 247 44.1
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 4.1e-34 149.1 262 43.9
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 7.0e-34 148.3 264 42.4
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 2.0e-33 146.7 245 43.7
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 7.7e-33 144.8 241 44.0
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 1.3e-32 144.1 255 42.7
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 1.7e-32 143.7 226 46.0
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 2.9e-32 142.9 232 42.7
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 2.9e-32 142.9 254 44.1
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 8.5e-32 141.4 238 45.8
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.9e-31 140.2 255 41.6
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 7.2e-31 138.3 214 43.9
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 7.2e-31 138.3 241 43.6
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 7.2e-31 138.3 228 43.9
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 1.2e-30 137.5 264 42.4
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 2.1e-30 136.7 254 39.4
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 2.1e-30 136.7 229 41.0
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 2.7e-30 136.3 241 39.4
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 2.7e-30 136.3 231 42.4
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 4.7e-30 135.6 223 45.7
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 4.7e-30 135.6 252 40.5
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 4.7e-30 135.6 254 41.3
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 6.1e-30 135.2 245 43.3
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 8.0e-30 134.8 241 41.5
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 1.4e-29 134.0 263 41.1
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 5.2e-29 132.1 239 42.7
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 6.7e-29 131.7 221 45.2
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 8.8e-29 131.3 242 42.6
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 1.5e-28 130.6 240 40.8
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 2.6e-28 129.8 142 54.9
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 3.3e-28 129.4 213 46.0
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 5.7e-28 128.6 219 43.4
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 7.5e-28 128.3 231 42.0
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 2.2e-27 126.7 249 40.6
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 2.8e-27 126.3 260 37.7
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 7.0e-26 121.7 220 41.4
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 7.0e-26 121.7 220 41.4
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 9.1e-26 121.3 245 39.6
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 9.1e-26 121.3 220 41.4
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 1.6e-25 120.6 186 46.2
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 2.7e-25 119.8 174 46.6
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.0e-24 117.9 172 47.1
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.3e-24 117.5 229 42.8
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 1.7e-24 117.1 221 43.0
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 6.5e-24 115.2 229 42.8
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 6.5e-24 115.2 240 40.0
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 1.1e-23 114.4 235 37.4
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 1.9e-23 113.6 233 37.3
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 1.9e-23 113.6 233 37.3
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 3.2e-23 112.8 238 37.8
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 3.2e-23 112.8 238 37.8
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 9.4e-23 111.3 238 37.4
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 9.4e-23 111.3 282 34.4
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 9.4e-23 111.3 229 41.9
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 1.6e-22 110.5 239 36.8
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 2.7e-22 109.8 256 37.9
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 8.0e-22 108.2 235 38.3
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.8e-21 107.1 237 35.4
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.8e-21 107.1 202 40.1
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.3e-21 106.7 249 37.8
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 3.0e-21 106.3 246 37.4
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 3.0e-21 106.3 237 36.3
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 8.8e-21 104.8 246 39.0
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 8.8e-21 104.8 248 35.1
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 1.2e-20 104.4 242 38.4
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.5e-20 104.0 239 33.5
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.0e-20 103.6 219 38.4
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.6e-20 103.2 219 38.8
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 5.7e-20 102.1 245 38.8
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 5.7e-20 102.1 245 38.8
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 5.7e-20 102.1 245 38.8
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 5.7e-20 102.1 248 33.9
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 9.8e-20 101.3 219 38.4
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 9.8e-20 101.3 173 45.7
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 2.2e-19 100.1 239 36.8
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 2.2e-19 100.1 238 42.0
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 2.8e-19 99.8 125 52.0
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 3.7e-19 99.4 241 34.0
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 6.3e-19 98.6 237 33.8
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 6.3e-19 98.6 237 33.8
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 8.3e-19 98.2 220 37.7
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.4e-18 97.4 245 36.3
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 2.4e-18 96.7 248 32.3
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 4.1e-18 95.9 254 35.0
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 7.0e-18 95.1 172 39.5
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 1.2e-17 94.4 236 36.0
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 2.7e-17 93.2 216 36.1
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 4.5e-17 92.4 171 39.2
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 4.5e-17 92.4 251 35.1
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 5.9e-17 92.0 254 33.5
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.3e-16 90.9 249 33.3
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.3e-16 90.9 261 34.1
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 2.9e-16 89.7 174 41.4
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 8.5e-16 88.2 188 39.4
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 1.5e-15 87.4 233 35.2
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 5.5e-15 85.5 239 32.6
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 1.6e-14 84.0 267 33.3
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.5e-12 77.4 149 38.3
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 5.7e-12 75.5 96 51.0
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 7.5e-12 75.1 223 32.3
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 2.8e-11 73.2 127 40.2
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 6.3e-11 72.0 187 32.1
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 4.1e-10 69.3 93 50.5
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 1.7e-08 63.9 137 36.5
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 2.3e-08 63.5 82 43.9
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 6.6e-08 62.0 148 37.8
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 1.5e-07 60.8 224 28.6
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 5.6e-07 58.9 200 31.0


User provided reference genes

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