Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 8.1e-108 393.7 187 100.0
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 2.0e-34 149.8 72 97.2
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 5.6e-32 141.7 70 94.3
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 5.6e-32 141.7 70 94.3
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 7.3e-32 141.4 70 92.9
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 7.3e-32 141.4 70 92.9
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 1.2e-31 140.6 70 92.9
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 1.6e-31 140.2 70 91.4
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 2.8e-31 139.4 81 82.7
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 2.8e-31 139.4 70 91.4
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 3.6e-31 139.0 70 92.9
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 6.2e-31 138.3 70 91.4
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 6.2e-31 138.3 70 92.9
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 8.0e-31 137.9 70 90.0
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.0e-30 137.5 70 90.0
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.4e-30 137.1 70 90.0
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 1.4e-30 137.1 70 88.6
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 1.4e-30 137.1 70 88.6
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.4e-30 137.1 69 92.8
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 1.4e-30 137.1 70 91.4
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 1.8e-30 136.7 70 91.4
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.8e-30 136.7 73 87.7
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 1.8e-30 136.7 70 90.0
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.8e-30 136.7 70 88.6
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.8e-30 136.7 70 90.0
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 2.3e-30 136.3 70 88.6
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 2.3e-30 136.3 70 91.4
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 2.3e-30 136.3 70 90.0
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 3.1e-30 136.0 70 91.4
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.1e-30 136.0 70 90.0
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.1e-30 136.0 70 90.0
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.1e-30 136.0 70 90.0
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 4.0e-30 135.6 70 88.6
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 4.0e-30 135.6 70 90.0
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 5.2e-30 135.2 70 90.0
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 5.2e-30 135.2 70 90.0
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 5.2e-30 135.2 70 91.4
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 5.2e-30 135.2 70 85.7
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 5.2e-30 135.2 70 85.7
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 5.2e-30 135.2 70 85.7
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 6.8e-30 134.8 70 88.6
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 8.9e-30 134.4 70 88.6
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 8.9e-30 134.4 70 87.1
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 8.9e-30 134.4 70 90.0
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 8.9e-30 134.4 70 87.1
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 8.9e-30 134.4 70 88.6
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 8.9e-30 134.4 70 88.6
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 1.2e-29 134.0 70 85.7
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 1.2e-29 134.0 70 88.6
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 1.2e-29 134.0 76 81.6
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 1.2e-29 134.0 70 87.1
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.2e-29 134.0 70 87.1
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.2e-29 134.0 70 87.1
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.2e-29 134.0 70 87.1
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.2e-29 134.0 70 85.7
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 1.5e-29 133.7 70 88.6
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.5e-29 133.7 70 88.6
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 1.5e-29 133.7 70 90.0
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.5e-29 133.7 70 87.1
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.5e-29 133.7 70 87.1
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.5e-29 133.7 70 87.1
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 1.5e-29 133.7 70 88.6
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 1.5e-29 133.7 70 88.6
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 1.5e-29 133.7 70 88.6
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.0e-29 133.3 70 87.1
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 2.0e-29 133.3 70 88.6
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.0e-29 133.3 70 88.6
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.0e-29 133.3 70 88.6
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 2.0e-29 133.3 70 88.6
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.0e-29 133.3 70 88.6
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 2.6e-29 132.9 70 87.1
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 2.6e-29 132.9 70 87.1
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 2.6e-29 132.9 70 85.7
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 2.6e-29 132.9 70 90.0
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 3.4e-29 132.5 70 85.7
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 4.4e-29 132.1 70 87.1
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 4.4e-29 132.1 70 85.7
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 5.8e-29 131.7 71 90.1
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 7.5e-29 131.3 70 87.1
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 7.5e-29 131.3 70 85.7
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 7.5e-29 131.3 70 85.7
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 7.5e-29 131.3 70 87.1
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 7.5e-29 131.3 70 84.3
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 9.8e-29 131.0 70 87.1
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 9.8e-29 131.0 70 87.1
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 9.8e-29 131.0 70 84.3
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 9.8e-29 131.0 70 87.1
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 9.8e-29 131.0 70 87.1
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.3e-28 130.6 70 85.7
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 1.3e-28 130.6 70 87.1
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 1.7e-28 130.2 70 85.7
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 1.7e-28 130.2 70 87.1
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.2e-28 129.8 70 85.7
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.2e-28 129.8 70 84.3
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 2.9e-28 129.4 70 82.9
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 2.9e-28 129.4 70 87.1
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 2.9e-28 129.4 70 84.3
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 2.9e-28 129.4 70 85.7
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 3.7e-28 129.0 70 87.1
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 3.7e-28 129.0 70 84.3
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 4.9e-28 128.6 70 85.7
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 6.4e-28 128.3 69 85.5
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 1.1e-27 127.5 70 84.3
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 1.1e-27 127.5 70 84.3
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.4e-27 127.1 70 85.7
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 1.9e-27 126.7 70 82.9
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 1.9e-27 126.7 70 82.9
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 1.9e-27 126.7 70 82.9
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 1.9e-27 126.7 70 82.9
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.4e-27 126.3 70 82.9
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 4.1e-27 125.6 70 81.4
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 5.4e-27 125.2 70 82.9
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 5.4e-27 125.2 70 84.3
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 5.4e-27 125.2 70 84.3
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 7.0e-27 124.8 70 80.0
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.2e-26 124.0 67 83.6
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.6e-26 123.6 67 83.6
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 2.7e-26 122.9 70 84.3
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.5e-26 122.5 70 81.4
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 4.6e-26 122.1 70 80.0
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 6.0e-26 121.7 67 82.1
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 6.0e-26 121.7 71 80.3
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 1.3e-25 120.6 70 77.1
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 1.3e-25 120.6 70 77.1
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 1.3e-25 120.6 70 78.6
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 1.3e-25 120.6 70 78.6
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.7e-25 120.2 98 62.2
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 1.7e-25 120.2 70 77.1
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 1.7e-25 120.2 67 80.6
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 6.6e-25 118.2 105 56.2
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 6.6e-25 118.2 65 84.6
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 8.6e-25 117.9 70 77.1
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 1.1e-24 117.5 70 75.7
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 1.1e-24 117.5 70 75.7
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 1.1e-24 117.5 70 75.7
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 1.1e-24 117.5 70 75.7
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 1.1e-24 117.5 70 75.7
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 1.1e-24 117.5 70 75.7
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 1.1e-24 117.5 70 75.7
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.1e-24 117.5 70 75.7
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 1.5e-24 117.1 70 81.4
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 2.5e-24 116.3 67 79.1
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 5.6e-24 115.2 70 74.3
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 1.2e-23 114.0 70 74.3
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 8.1e-23 111.3 70 78.6
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 8.1e-23 111.3 71 74.6
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.6e-18 95.5 51 84.3
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.6e-18 95.5 51 84.3
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.6e-18 95.5 51 84.3
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.6e-18 95.5 51 84.3
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.7e-17 93.6 58 75.9
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 5.1e-17 92.0 44 93.2
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 1.1e-16 90.9 70 60.0
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.3e-16 89.4 47 83.0
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 4.3e-16 89.0 70 62.9
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 9.5e-16 87.8 49 83.7
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 1.6e-15 87.0 70 58.6
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.1e-15 86.7 49 81.6
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.3e-14 83.2 48 75.0
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 6.8e-14 81.6 48 77.1
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 2.0e-13 80.1 59 67.8
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 5.8e-13 78.6 72 62.5
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 3.7e-12 75.9 54 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 1.6e-10 70.5 62 53.2
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 5.6e-08 62.0 46 60.9


User provided reference genes

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