Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 2.9e-84 315.1 149 100.0
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 4.8e-79 297.7 149 93.3
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 3.5e-77 291.6 149 87.9
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 4.5e-77 291.2 149 87.9
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 4.5e-77 291.2 149 87.9
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 4.5e-77 291.2 148 88.5
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 7.7e-77 290.4 146 89.0
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.0e-76 290.0 148 87.8
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 3.2e-75 285.0 149 86.6
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 5.5e-75 284.3 149 84.6
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 9.4e-75 283.5 146 87.0
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 9.4e-75 283.5 148 85.8
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 1.2e-74 283.1 149 85.2
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.2e-74 283.1 148 86.5
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 3.6e-74 281.6 149 85.2
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 3.6e-74 281.6 149 85.2
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 8.0e-74 280.4 148 84.5
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 8.0e-74 280.4 149 83.9
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.8e-73 279.3 149 83.2
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 4.0e-73 278.1 146 83.6
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 5.2e-73 277.7 149 83.2
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 6.8e-73 277.3 149 83.2
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 8.8e-73 276.9 149 82.6
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.5e-72 276.2 149 80.5
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 2.0e-72 275.8 149 83.2
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 2.6e-72 275.4 148 82.4
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 2.6e-72 275.4 146 84.2
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 7.5e-72 273.9 149 81.9
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 2.2e-71 272.3 148 83.8
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 3.7e-71 271.6 146 84.2
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 4.8e-71 271.2 149 81.2
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 6.3e-71 270.8 148 80.4
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 6.3e-71 270.8 145 84.1
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.4e-70 269.6 146 83.6
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 4.1e-70 268.1 148 82.4
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 5.4e-70 267.7 148 79.1
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 7.0e-70 267.3 148 79.1
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 9.1e-70 266.9 146 82.9
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 1.2e-69 266.5 148 79.1
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.6e-69 266.2 148 80.4
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 1.6e-69 266.2 148 79.1
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 3.5e-69 265.0 148 78.4
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 4.5e-69 264.6 146 82.2
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 5.9e-69 264.2 147 82.3
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 5.9e-69 264.2 145 79.3
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.3e-68 263.1 139 84.9
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.3e-68 263.1 144 82.6
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 2.9e-68 261.9 139 85.6
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 3.8e-68 261.5 148 77.0
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 6.5e-68 260.8 141 83.7
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.5e-67 259.6 141 83.0
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 1.5e-67 259.6 149 78.5
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 1.5e-67 259.6 141 83.7
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 3.2e-67 258.5 149 77.9
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.6e-66 256.1 149 76.5
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.6e-66 256.1 148 77.0
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 2.1e-66 255.8 146 78.8
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.8e-66 255.4 144 79.2
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 2.8e-66 255.4 148 76.4
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 4.7e-66 254.6 145 78.6
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 4.7e-66 254.6 145 78.6
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 4.7e-66 254.6 144 79.2
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 6.1e-66 254.2 145 78.6
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 6.1e-66 254.2 148 75.7
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 8.0e-66 253.8 148 75.7
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 8.0e-66 253.8 145 78.6
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.0e-65 253.4 144 78.5
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 1.4e-65 253.1 148 75.7
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 1.4e-65 253.1 149 75.8
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 1.4e-65 253.1 149 75.8
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.4e-65 253.1 148 76.4
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 2.3e-65 252.3 148 75.7
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 2.3e-65 252.3 148 75.7
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 2.3e-65 252.3 148 75.7
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 2.3e-65 252.3 148 75.7
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 3.0e-65 251.9 148 75.7
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 3.0e-65 251.9 148 75.7
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 4.0e-65 251.5 148 74.3
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 6.8e-65 250.8 148 75.0
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 8.9e-65 250.4 142 79.6
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.2e-64 250.0 139 79.1
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 2.0e-64 249.2 148 75.0
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 2.0e-64 249.2 149 76.5
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.6e-64 248.8 143 76.9
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 3.4e-64 248.4 148 74.3
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 5.7e-64 247.7 146 75.3
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 5.7e-64 247.7 148 74.3
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 7.5e-64 247.3 148 74.3
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 7.5e-64 247.3 141 77.3
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 7.5e-64 247.3 142 76.8
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 2.2e-63 245.7 147 72.8
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 6.3e-63 244.2 148 75.7
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 8.3e-63 243.8 150 74.7
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 1.1e-62 243.4 144 74.3
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 1.8e-62 242.7 143 74.1
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.1e-62 241.9 137 77.4
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 3.1e-62 241.9 144 73.6
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 2.0e-61 239.2 146 73.3
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 5.9e-61 237.7 144 70.8
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.3e-60 236.5 145 73.8
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 1.3e-60 236.5 143 72.7
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.3e-60 236.5 144 71.5
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.7e-60 236.1 124 86.3
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 1.7e-60 236.1 141 74.5
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 5.0e-60 234.6 144 70.8
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 6.6e-60 234.2 150 72.0
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.5e-59 233.0 139 74.8
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 5.6e-59 231.1 143 74.1
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 2.1e-58 229.2 142 71.8
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 2.3e-57 225.7 136 71.3
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 6.8e-57 224.2 150 68.0
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.2e-56 223.4 143 69.2
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 2.6e-56 222.2 143 74.1
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 1.3e-55 219.9 146 68.5
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.5e-51 205.7 109 84.4
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 2.2e-47 192.6 146 63.7
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.9e-46 189.5 148 62.2
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 9.2e-46 187.2 149 55.0
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 1.7e-44 183.0 149 54.4
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 5.0e-44 181.4 123 67.5
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.2e-42 176.8 128 64.1
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 8.9e-41 170.6 103 74.8
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 5.8e-40 167.9 149 57.7
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 9.9e-40 167.2 150 54.0
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 3.7e-39 165.2 123 61.0
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 3.9e-36 155.2 150 50.7
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 1.9e-35 152.9 123 57.7
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 9.5e-35 150.6 149 51.7
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 9.5e-35 150.6 150 49.3
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 3.1e-33 145.6 162 50.6
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 3.1e-33 145.6 131 57.3
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 5.2e-33 144.8 162 50.6
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 7.6e-32 141.0 150 48.7
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 4.9e-31 138.3 90 71.1
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 1.1e-30 137.1 151 43.7
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 6.9e-25 117.9 67 77.6
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 1.0e-20 104.0 124 41.9
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 3.4e-16 89.0 62 66.1
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 9.3e-14 80.9 53 67.9
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 1.6e-13 80.1 62 66.1
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 7.9e-13 77.8 120 35.8
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.3e-11 72.4 58 56.9
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 2.8e-10 69.3 48 58.3
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 1.7e-07 60.1 43 62.8
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 2.9e-07 59.3 46 52.2


User provided reference genes

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