Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu009356.1 Olea europaea HOM05D001304 ORTHO05D008890 1.3e-32 142.5 72 100.0
Oeu020321.1 Olea europaea HOM05D001304 ORTHO05D008890 2.4e-23 111.7 57 93.0
SalBow2G0118 Salvia bowleyana HOM05D001304 ORTHO05D008890 2.2e-21 105.1 57 87.7
Sc04g0009800 Simmondsia chinensis HOM05D001304 ORTHO05D008890 2.2e-21 105.1 57 86.0
Ah.02g130500 Amaranthus hybridus HOM05D001304 ORTHO05D008890 6.5e-21 103.6 57 87.7
Sed0004969 Sechium edule HOM05D001304 ORTHO05D008890 1.1e-20 102.8 57 87.7
CsaV3_2G025190 Cucumis sativus L. HOM05D001304 ORTHO05D008890 1.4e-20 102.4 57 87.7
Atru.chr11.2216 Acer truncatum HOM05D001304 ORTHO05D008890 1.9e-20 102.1 57 87.7
MSTRG.7966 Avicennia marina HOM05D001304 ORTHO05D008890 1.9e-20 102.1 57 87.7
Dinv11009 Davidia involucrata HOM05D001304 ORTHO05D008890 1.9e-20 102.1 57 87.7
Duzib251G0230 Durio zibethinus HOM05D001304 ORTHO05D008890 1.9e-20 102.1 72 75.0
unitig_8.g2912 Utricularia gibba HOM05D000468 ORTHO05D008890 1.9e-20 102.1 57 86.0
SGA_v2.0_scaffold484G52361 Striga asiatica HOM05D001304 ORTHO05D008890 2.5e-20 101.7 57 86.0
Ciclev10032669m.g Citrus clementina HOM05D001304 ORTHO05D008890 5.5e-20 100.5 57 86.0
COL.COLO4_23565 Corchorus olitorius HOM05D001304 ORTHO05D008890 5.5e-20 100.5 57 86.0
Eucgr.H04690 Eucalyptus grandis HOM05D001304 ORTHO05D008890 5.5e-20 100.5 57 86.0
PGR119G0865 Punica granatum HOM05D001304 ORTHO05D008890 5.5e-20 100.5 57 87.7
Actinidia15135 Actinidia chinensis HOM05D001304 ORTHO05D008890 7.1e-20 100.1 57 86.0
AUR62005553 Chenopodium quinoa HOM05D001304 ORTHO05D008890 7.1e-20 100.1 57 82.5
Gohir.A04G137800 Gossypium hirsutum HOM05D001304 ORTHO05D008890 7.1e-20 100.1 72 73.6
Gohir.D04G181000 Gossypium hirsutum HOM05D001304 ORTHO05D008890 7.1e-20 100.1 72 73.6
Gorai.012G174200 Gossypium raimondii HOM05D001304 ORTHO05D008890 7.1e-20 100.1 72 73.6
Psat5g093920 Pisum sativum HOM05D001304 ORTHO05D008890 7.1e-20 100.1 60 80.0
Cc11_g16390 Coffea canephora HOM05D001304 ORTHO05D008890 1.2e-19 99.4 57 84.2
Migut.K00680 Erythranthe guttata HOM05D001304 ORTHO05D008890 1.2e-19 99.4 57 82.5
Manes.12G017100 Manihot esculenta HOM05D001304 ORTHO05D008890 1.2e-19 99.4 57 86.0
Thecc.02G270700 Theobroma cacao HOM05D001304 ORTHO05D008890 1.2e-19 99.4 57 84.2
TPR.G33410 Trifolium pratense HOM05D001304 ORTHO05D008890 1.2e-19 99.4 72 72.2
FvH4_4g24830 Fragaria vesca HOM05D001304 ORTHO05D008890 1.6e-19 99.0 57 82.5
FAN07G1515 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.6e-19 99.0 57 82.5
FAN12G0763 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.6e-19 99.0 57 82.5
FAN17G2678 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.6e-19 99.0 57 82.5
FAN22G1346 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.6e-19 99.0 57 82.5
Prupe.1G237600 Prunus persica HOM05D001304 ORTHO05D008890 1.6e-19 99.0 57 82.5
RcHm_v2.0_Chr4g0431911 Rosa chinensis HOM05D001304 ORTHO05D008890 1.6e-19 99.0 57 82.5
AL2G26400 Arabidopsis lyrata HOM05D001304 ORTHO05D008890 2.1e-19 98.6 57 86.0
AT1G67700 Arabidopsis thaliana HOM05D001304 ORTHO05D008890 2.1e-19 98.6 57 86.0
BcaB03g15175 Brassica carinata HOM05D001304 ORTHO05D008890 2.1e-19 98.6 57 86.0
BcaC08g46045 Brassica carinata HOM05D001304 ORTHO05D008890 2.1e-19 98.6 57 86.0
BcaC08g46187 Brassica carinata HOM05D001304 ORTHO05D008890 2.1e-19 98.6 57 86.0
A07p32450 Brassica napus HOM05D001304 ORTHO05D008890 2.1e-19 98.6 57 86.0
C06p38480 Brassica napus HOM05D001304 ORTHO05D008890 2.1e-19 98.6 57 86.0
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 2.1e-19 98.6 57 86.0
BolC6t38945H Brassica oleracea HOM05D001304 ORTHO05D008890 2.1e-19 98.6 57 86.0
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 2.1e-19 98.6 57 86.0
BraA07t30869Z Brassica rapa HOM05D001304 ORTHO05D008890 2.1e-19 98.6 57 86.0
CSS0032412 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D008721 2.1e-19 98.6 57 84.2
CARHR060290 Cardamine hirsuta HOM05D001304 ORTHO05D008890 2.1e-19 98.6 57 86.0
Glyma.11G246700 Glycine max HOM05D001304 ORTHO05D008890 2.1e-19 98.6 57 82.5
MD13G1108600 Malus domestica HOM05D001304 ORTHO05D008890 2.1e-19 98.6 57 80.7
Sp5g22690 Schrenkiella parvula HOM05D001304 ORTHO05D008890 2.1e-19 98.6 57 86.0
PGSC0003DMG400017453 Solanum tuberosum HOM05D001304 ORTHO05D008890 2.1e-19 98.6 57 82.5
CiPaw.05G174500 Carya illinoinensis HOM05D001304 ORTHO05D008890 2.7e-19 98.2 57 82.5
Potri.010G053600 Populus trichocarpa HOM05D001304 ORTHO05D008890 2.7e-19 98.2 57 84.2
AUR62024180 Chenopodium quinoa HOM05D001304 ORTHO05D008890 3.5e-19 97.8 57 80.7
ATR0824G252 Amborella trichopoda HOM05D001304 ORTHO05D008890 4.6e-19 97.4 57 80.7
Lj6g0017703 Lotus japonicus HOM05D001304 ORTHO05D008890 4.6e-19 97.4 57 78.9
Phvul.001G258300 Phaseolus vulgaris HOM05D001304 ORTHO05D008890 4.6e-19 97.4 57 80.7
THA.LOC104825532 Tarenaya hassleriana HOM05D001304 ORTHO05D008890 4.6e-19 97.4 57 82.5
Rhsim12G0107100 Rhododendron simsii HOM05D001304 ORTHO05D008890 6.1e-19 97.1 57 82.5
Solyc05g014310.3 Solanum lycopersicum HOM05D001304 ORTHO05D008890 6.1e-19 97.1 57 80.7
Sopen05g009420 Solanum pennellii HOM05D001304 ORTHO05D008890 6.1e-19 97.1 57 80.7
CANSAT01G0179 Cannabis sativa HOM05D001304 ORTHO05D008890 7.9e-19 96.7 72 69.4
Ca_16494_v3 Cicer arietinum L. HOM05D001304 ORTHO05D008890 7.9e-19 96.7 60 78.3
Nitab4.5_0000041g0390 Nicotiana tabacum HOM05D001304 ORTHO05D008890 7.9e-19 96.7 57 80.7
Nitab4.5_0001318g0090 Nicotiana tabacum HOM05D001304 ORTHO05D008890 7.9e-19 96.7 57 80.7
TWI36G0586 Tripterygium wilfordii HOM05D001304 ORTHO05D008890 7.9e-19 96.7 57 82.5
Carub.0002s1413 Capsella rubella HOM05D001304 ORTHO05D008890 1.3e-18 95.9 57 82.5
Hund06057 Selenicereus undatus HOM05D001304 ORTHO05D008890 1.3e-18 95.9 57 80.7
VMungo1383G0240 Vigna mungo HOM05D001304 ORTHO05D008890 1.3e-18 95.9 57 78.9
Aa31LG4G12100 Aethionema arabicum HOM05D001304 ORTHO05D008890 1.8e-18 95.5 57 82.5
EL10As2g23248 Beta vulgaris HOM05D001304 ORTHO05D008890 2.3e-18 95.1 57 77.2
Thhalv10019020m.g Eutrema salsugineum HOM05D001304 ORTHO05D008890 2.3e-18 95.1 57 82.5
Medtr3g086040 Medicago truncatula HOM05D001304 ORTHO05D008890 2.3e-18 95.1 72 70.8
Sabra10G0017000 Salix brachista HOM05D001304 ORTHO05D008890 2.3e-18 95.1 57 82.5
vmacro16148 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 3.0e-18 94.7 57 80.7
Peaxi162Scf00128g00729 Petunia axillaris HOM05D001304 ORTHO05D008890 3.9e-18 94.4 57 78.9
GSVIVG01010306001 Vitis vinifera HOM05D001304 ORTHO05D008890 3.9e-18 94.4 57 77.2
CDE02G1129 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 5.1e-18 94.0 57 75.4
CDE09G0600 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 5.1e-18 94.0 57 75.4
HPP92_004594 Vanilla planifolia HOM05D001304 ORTHO05D008890 5.1e-18 94.0 57 77.2
Lalb_Chr08g0230761 Lupinus albus HOM05D001304 ORTHO05D008890 6.7e-18 93.6 57 78.9
Cfa009288 Carpinus fangiana HOM05D001304 ORTHO05D008890 8.7e-18 93.2 58 79.3
Haze_12318 Corylus avellana HOM05D001304 ORTHO05D008890 1.5e-17 92.4 57 78.9
HanXRQChr08g0207321 Helianthus annuus HOM05D001304 ORTHO05D008890 1.9e-17 92.0 57 75.4
arahy.Tifrunner.gnm1.ann1.VHC2JK Arachis hypogaea HOM05D001304 ORTHO05D008890 2.5e-17 91.7 57 78.9
PSO063G7645 Papaver somniferum HOM05D001304 ORTHO05D008890 7.4e-17 90.1 57 71.9
PSO782G0777 Papaver somniferum HOM05D001304 ORTHO05D008890 7.4e-17 90.1 57 71.9
TAR622G1249 Trochodendron aralioides HOM05D001304 ORTHO05D008890 1.3e-16 89.4 57 73.7
CDE04G1632 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 2.2e-16 88.6 57 71.9
Lsat_1_v5_gn_8_150960 Lactuca sativa HOM05D001304 ORTHO05D008890 2.8e-16 88.2 57 68.4
ECA233G5962 Erigeron canadensis HOM05D000468 ORTHO05D000548 8.2e-16 86.7 57 66.7
TAR629G1650 Trochodendron aralioides HOM05D001304 ORTHO05D008890 1.1e-15 86.3 57 71.9
Os02g0600200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D008890 3.1e-15 84.7 57 68.4
Zm00001eb246340 Zea mays HOM05D001304 ORTHO05D008890 6.9e-15 83.6 59 66.1
Aqoxy5G03572 Aquilegia oxysepala HOM05D001304 ORTHO05D008890 9.0e-15 83.2 57 70.2
Lj6C819T3 Lonicera japonica HOM05D001304 ORTHO05D008890 2.6e-14 81.6 57 75.4
Actinidia24567 Actinidia chinensis HOM05D001304 ORTHO05D008890 3.8e-13 77.8 58 63.8
SEGI_40444 Sequoiadendron giganteum HOM05D001304 ORTHO05D008890 6.1e-11 70.5 57 54.4
Cfa021197 Carpinus fangiana HOM05D001304 ORTHO05D008890 5.1e-10 67.4 67 56.7
Pp3c14_9580 Physcomitrium patens HOM05D001304 ORTHO05D008890 2.2e-08 62.0 57 54.4
CBR_g28672 Chara braunii HOM05D001304 ORTHO05D008890 3.7e-08 61.2 50 58.0
Mapoly0101s0039 Marchantia polymorpha HOM05D001304 ORTHO05D008890 6.3e-08 60.5 59 50.8
Cpa.g.c30628.2 Carica papaya HOM05D001304 ORTHO05D008890 2.4e-07 58.5 29 89.7
MELO3C010716.2 Cucumis melo HOM05D001304 ORTHO05D008890 4.1e-07 57.8 28 92.9
DCAR_026486 Daucus carota HOM05D000468 ORTHO05D008890 5.3e-07 57.4 29 86.2


User provided reference genes

Program Settings