Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu009141.2 Olea europaea HOM05D002002 ORTHO05D003658 4.7e-70 267.7 130 100.0
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 2.1e-33 146.0 92 77.2
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 5.8e-28 127.9 128 50.0
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 5.8e-28 127.9 90 64.4
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 2.2e-27 125.9 92 64.1
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 4.9e-27 124.8 111 55.0
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 1.1e-26 123.6 196 36.7
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 6.0e-25 117.9 127 47.2
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 1.5e-23 113.2 124 46.0
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 9.5e-23 110.5 132 41.7
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 1.2e-22 110.2 88 53.4
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 1.2e-22 110.2 114 48.2
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 1.8e-21 106.3 126 44.4
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 5.2e-21 104.8 89 52.8
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 6.8e-21 104.4 124 42.7
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 8.9e-21 104.0 158 37.3
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 8.9e-21 104.0 93 48.4
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 1.7e-19 99.8 89 51.7
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 4.9e-19 98.2 88 48.9
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 6.4e-19 97.8 97 47.4
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 6.4e-19 97.8 82 54.9
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 8.4e-19 97.4 85 50.6
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 1.1e-18 97.1 82 53.7
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.9e-18 96.3 82 53.7
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 1.9e-18 96.3 96 46.9
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 1.9e-18 96.3 85 48.2
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 4.2e-18 95.1 100 48.0
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 7.1e-18 94.4 78 51.3
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 1.6e-17 93.2 88 46.6
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.6e-17 93.2 77 48.1
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 3.5e-17 92.0 79 49.4
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 4.6e-17 91.7 127 40.9
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 4.6e-17 91.7 89 46.1
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 7.8e-17 90.9 79 51.9
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 7.8e-17 90.9 78 50.0
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 7.8e-17 90.9 89 49.4
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 1.0e-16 90.5 80 48.8
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 1.7e-16 89.7 82 47.6
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 2.3e-16 89.4 89 41.6
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 3.0e-16 89.0 79 46.8
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 3.9e-16 88.6 95 37.9
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 8.7e-16 87.4 81 45.7
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 8.7e-16 87.4 98 41.8
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.1e-15 87.0 85 47.1
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.5e-15 86.7 113 38.9
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 1.9e-15 86.3 91 45.1
Glyma.01G025900 Glycine max HOM05D002002 ORTHO05D003658 1.9e-15 86.3 98 40.8
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 2.5e-15 85.9 104 41.3
TPR.G17746 Trifolium pratense HOM05D002002 ORTHO05D003658 4.3e-15 85.1 98 38.8
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 4.3e-15 85.1 90 41.1
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 1.3e-14 83.6 85 45.9
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.3e-14 83.6 85 45.9
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 2.8e-14 82.4 85 40.0
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 2.8e-14 82.4 76 46.1
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.6e-14 82.0 85 43.5
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.6e-14 82.0 85 43.5
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 3.6e-14 82.0 73 47.9
Phvul.002G149900 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 3.6e-14 82.0 96 42.7
Glyma.02G038900 Glycine max HOM05D002002 ORTHO05D003658 3.4e-12 75.5 83 43.4
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 4.4e-12 75.1 80 37.5
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 4.4e-12 75.1 95 35.8
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 7.6e-12 74.3 75 45.3
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 9.9e-12 73.9 74 44.6
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 2.2e-11 72.8 85 35.3
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 2.2e-11 72.8 73 41.1
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 2.9e-11 72.4 85 35.3
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 2.9e-11 72.4 78 37.2
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 1.1e-10 70.5 75 41.3
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 1.4e-10 70.1 74 37.8
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.4e-10 70.1 77 37.7
VMungo1215G2343 Vigna mungo HOM05D000068 ORTHO05D004691 2.4e-10 69.3 95 41.1
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 3.2e-10 68.9 75 37.3
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 4.2e-10 68.6 74 37.8
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 4.2e-10 68.6 78 33.3
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 5.4e-10 68.2 78 32.1
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 5.4e-10 68.2 71 40.8
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 5.4e-10 68.2 71 40.8
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 5.4e-10 68.2 79 36.7
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 7.1e-10 67.8 79 35.4
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.1e-10 67.8 79 35.4
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.1e-10 67.8 79 35.4
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 9.3e-10 67.4 74 35.1
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 9.3e-10 67.4 81 35.8
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 9.3e-10 67.4 79 35.4
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.1e-09 66.2 79 34.2
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 2.7e-09 65.9 74 40.5
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 2.7e-09 65.9 74 37.8
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 2.7e-09 65.9 78 33.3
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 4.6e-09 65.1 86 32.6
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 4.6e-09 65.1 73 35.6
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 6.0e-09 64.7 80 32.5
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 6.0e-09 64.7 74 32.4
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 6.0e-09 64.7 76 32.9
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.0e-08 63.9 74 32.4
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 1.0e-08 63.9 74 35.1
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 1.0e-08 63.9 73 35.6
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 1.0e-08 63.9 74 33.8
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 1.0e-08 63.9 73 37.0
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 1.7e-08 63.2 75 37.3
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 2.3e-08 62.8 74 33.8
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 3.0e-08 62.4 79 34.2
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 3.0e-08 62.4 74 33.8
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 3.0e-08 62.4 74 33.8
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 5.1e-08 61.6 82 34.1
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.9e-07 59.7 73 34.2
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.9e-07 59.7 73 34.2
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 1.9e-07 59.7 71 35.2
VMungo1080G1428 Vigna mungo HOM05D007028 ORTHO05D003658 1.9e-07 59.7 73 37.0
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 2.5e-07 59.3 80 31.2
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 3.3e-07 58.9 69 37.7
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 3.3e-07 58.9 87 32.2
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 3.3e-07 58.9 74 32.4
arahy.Tifrunner.gnm1.ann1.RXM0S4 Arachis hypogaea HOM05D007028 ORTHO05D003658 4.3e-07 58.5 83 36.1
arahy.Tifrunner.gnm1.ann1.W3CHFV Arachis hypogaea HOM05D007028 ORTHO05D003658 4.3e-07 58.5 83 36.1
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 7.3e-07 57.8 79 38.0
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 7.3e-07 57.8 79 38.0
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 7.3e-07 57.8 73 34.2
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 7.3e-07 57.8 73 34.2
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 9.6e-07 57.4 73 35.6
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 9.6e-07 57.4 80 33.8
FAN07G0414 Fragaria x ananassa HOM05D002002 ORTHO05D008711 1.6e-06 56.6 114 34.2
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 2.8e-06 55.8 81 32.1
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 2.8e-06 55.8 75 38.7
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 2.8e-06 55.8 75 38.7
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 2.8e-06 55.8 75 38.7
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 2.8e-06 55.8 73 37.0
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 2.8e-06 55.8 73 37.0
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 3.6e-06 55.5 76 30.3
Glyma.13G369200 Glycine max HOM05D007028 ORTHO05D003658 3.6e-06 55.5 78 35.9
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 3.6e-06 55.5 78 34.6
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 3.6e-06 55.5 94 29.8
Ca_01026_v3 Cicer arietinum L. HOM05D007028 ORTHO05D003658 6.2e-06 54.7 73 35.6
Potri.014G170000 Populus trichocarpa HOM05D002002 ORTHO05D003658 6.2e-06 54.7 61 34.4
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 8.1e-06 54.3 76 32.9


User provided reference genes

Program Settings