Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu009126.1 Olea europaea HOM05D000068 ORTHO05D016331 1.6e-52 209.1 105 100.0
Oeu060591.1 Olea europaea HOM05D000068 ORTHO05D000084 1.8e-27 125.9 72 91.7
Oeu017300.1 Olea europaea HOM05D000068 ORTHO05D000084 2.9e-22 108.6 67 85.1
Lsat_1_v5_gn_2_90660 Lactuca sativa HOM05D000068 ORTHO05D000084 3.2e-13 78.6 77 53.2
Oeu017301.1 Olea europaea HOM05D000068 ORTHO05D000084 3.2e-13 78.6 46 87.0
Actinidia02725 Actinidia chinensis HOM05D000068 ORTHO05D000084 5.5e-13 77.8 71 52.1
Dinv33684 Davidia involucrata HOM05D000629 ORTHO05D000576 3.6e-12 75.1 66 51.5
Oeu062389.1 Olea europaea HOM05D000068 ORTHO05D000084 3.6e-12 75.1 46 84.8
Migut.H00869 Erythranthe guttata HOM05D000068 ORTHO05D000084 4.7e-12 74.7 81 45.7
Cfa007485 Carpinus fangiana HOM05D000068 ORTHO05D000084 8.0e-12 73.9 72 51.4
Haze_14612 Corylus avellana HOM05D000068 ORTHO05D000084 8.0e-12 73.9 72 50.0
Lalb_Chr02g0159921 Lupinus albus HOM05D000068 ORTHO05D000084 1.0e-11 73.6 72 52.8
ECA238G2224 Erigeron canadensis HOM05D000068 ORTHO05D000084 1.4e-11 73.2 77 50.6
Glyma.19G016400 Glycine max HOM05D000068 ORTHO05D000084 1.4e-11 73.2 72 51.4
Phvul.004G023132 Phaseolus vulgaris HOM05D000068 ORTHO05D000084 1.4e-11 73.2 72 51.4
Duzib147G0037 Durio zibethinus HOM05D000068 ORTHO05D000084 1.8e-11 72.8 72 51.4
Thecc.04G070200 Theobroma cacao HOM05D000068 ORTHO05D000084 1.8e-11 72.8 72 51.4
Actinidia36051 Actinidia chinensis HOM05D000068 ORTHO05D000084 4.0e-11 71.6 66 47.0
Gorai.012G058100 Gossypium raimondii HOM05D000068 ORTHO05D000084 4.0e-11 71.6 72 50.0
VMungo0464G2135 Vigna mungo HOM05D000068 ORTHO05D000084 5.2e-11 71.2 72 50.0
CSS0005583 Camellia sinensis var. sinensis HOM05D000629 ORTHO05D000084 6.8e-11 70.9 74 47.3
CSS0019274 Camellia sinensis var. sinensis HOM05D000629 ORTHO05D000576 6.8e-11 70.9 74 47.3
Gohir.D04G051900 Gossypium hirsutum HOM05D000068 ORTHO05D000084 6.8e-11 70.9 72 50.0
Gohir.A07G217000 Gossypium hirsutum HOM05D000068 ORTHO05D000084 8.8e-11 70.5 72 50.0
Gohir.D07G224000 Gossypium hirsutum HOM05D000068 ORTHO05D000084 8.8e-11 70.5 72 50.0
Gorai.001G258400 Gossypium raimondii HOM05D000068 ORTHO05D000084 8.8e-11 70.5 72 50.0
PGSC0003DMG400001400 Solanum tuberosum HOM05D000068 ORTHO05D000084 1.5e-10 69.7 72 47.2
Lj7C405T1 Lonicera japonica HOM05D000068 ORTHO05D000084 2.6e-10 68.9 65 55.4
Gohir.A05G362500 Gossypium hirsutum HOM05D000068 ORTHO05D000084 4.4e-10 68.2 72 48.6
CAN.G206.80 Capsicum annuum HOM05D000068 ORTHO05D000084 5.7e-10 67.8 73 49.3
AUR62030553 Chenopodium quinoa HOM05D000068 ORTHO05D000084 5.7e-10 67.8 68 51.5
AUR62030554 Chenopodium quinoa HOM05D000068 ORTHO05D000084 5.7e-10 67.8 68 51.5
PSO832G4079 Papaver somniferum HOM05D000068 ORTHO05D000084 5.7e-10 67.8 57 56.1
HanXRQChr14g0449161 Helianthus annuus HOM05D000068 ORTHO05D011548 7.5e-10 67.4 77 42.9
TWI56G0103 Tripterygium wilfordii HOM05D000068 ORTHO05D000084 7.5e-10 67.4 72 50.0
TAR622G0451 Trochodendron aralioides HOM05D000068 ORTHO05D000084 7.5e-10 67.4 73 47.9
Ah.12g065240 Amaranthus hybridus HOM05D000068 ORTHO05D000084 9.8e-10 67.0 67 52.2
HanXRQChr14g0449171 Helianthus annuus HOM05D000068 ORTHO05D000084 9.8e-10 67.0 76 47.4
MSTRG.23971 Avicennia marina HOM05D000068 ORTHO05D000084 1.3e-09 66.6 84 45.2
PSO591G0001 Papaver somniferum HOM05D000068 ORTHO05D000084 1.3e-09 66.6 57 54.4
COL.COLO4_37004 Corchorus olitorius HOM05D000068 ORTHO05D000084 1.7e-09 66.2 68 50.0
CiPaw.04G021600 Carya illinoinensis HOM05D000068 ORTHO05D000084 2.2e-09 65.9 60 50.0
DCAR_011180 Daucus carota HOM05D000068 ORTHO05D000084 2.2e-09 65.9 71 46.5
HanXRQChr07g0199271 Helianthus annuus HOM05D000068 ORTHO05D000084 2.8e-09 65.5 77 45.5
Actinidia06051 Actinidia chinensis HOM05D000068 ORTHO05D000084 3.7e-09 65.1 66 45.5
CARHR292620 Cardamine hirsuta HOM05D000068 ORTHO05D000084 3.7e-09 65.1 73 49.3
Glyma.08G342600 Glycine max HOM05D000068 ORTHO05D000084 3.7e-09 65.1 74 44.6
Hma1.2p1_0375F.1_g138930 Hydrangea macrophylla HOM05D000068 ORTHO05D000084 3.7e-09 65.1 71 43.7
Lalb_Chr06g0176561 Lupinus albus HOM05D000068 ORTHO05D000084 3.7e-09 65.1 70 48.6
PGR142G0394 Punica granatum HOM05D000068 ORTHO05D000084 3.7e-09 65.1 79 40.5
Sopen02g032160 Solanum pennellii HOM05D000068 ORTHO05D000084 3.7e-09 65.1 72 45.8
Cpa.g.sc14.71 Carica papaya HOM05D000068 ORTHO05D000084 4.9e-09 64.7 72 45.8
Cc07_g02790 Coffea canephora HOM05D000068 ORTHO05D000084 4.9e-09 64.7 76 43.4
Lj2g0020862 Lotus japonicus HOM05D000068 ORTHO05D000084 4.9e-09 64.7 65 46.2
Solyc02g087410.4 Solanum lycopersicum HOM05D000068 ORTHO05D000084 4.9e-09 64.7 72 44.4
CiPaw.03G032800 Carya illinoinensis HOM05D000068 ORTHO05D000084 6.3e-09 64.3 72 43.1
TPR.G32596 Trifolium pratense HOM05D000068 ORTHO05D000084 6.3e-09 64.3 67 47.8
arahy.Tifrunner.gnm1.ann1.SBJU4F Arachis hypogaea HOM05D000068 ORTHO05D000084 8.3e-09 63.9 73 47.9
EL10Ac2g02893 Beta vulgaris HOM05D000068 ORTHO05D000084 8.3e-09 63.9 66 50.0
Dinv31136 Davidia involucrata HOM05D000068 ORTHO05D000084 8.3e-09 63.9 55 56.4
Medtr6g009030 Medicago truncatula HOM05D000068 ORTHO05D000084 8.3e-09 63.9 66 43.9
Rhsim08G0062100 Rhododendron simsii HOM05D000068 ORTHO05D000084 8.3e-09 63.9 80 41.2
Lsat_1_v5_gn_2_90700 Lactuca sativa HOM05D000068 ORTHO05D000084 1.1e-08 63.5 64 50.0
Nn4g22954 Nelumbo nucifera HOM05D000068 ORTHO05D000084 1.1e-08 63.5 71 45.1
PGR083G2482 Punica granatum HOM05D000068 ORTHO05D000084 1.1e-08 63.5 69 47.8
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 1.1e-08 63.5 55 50.9
Glyma.07G081000 Glycine max HOM05D000068 ORTHO05D016331 1.4e-08 63.2 68 45.6
Glyma.19G016700 Glycine max HOM05D000068 ORTHO05D000084 1.4e-08 63.2 71 46.5
Medtr6g009090 Medicago truncatula HOM05D000068 ORTHO05D000084 1.4e-08 63.2 66 43.9
Medtr6g009110 Medicago truncatula HOM05D000068 ORTHO05D000084 1.4e-08 63.2 72 41.7
Sp2g17160 Schrenkiella parvula HOM05D000068 ORTHO05D000084 1.4e-08 63.2 73 47.9
Hund13298 Selenicereus undatus HOM05D000068 ORTHO05D000084 1.4e-08 63.2 70 44.3
arahy.Tifrunner.gnm1.ann1.VLLC8N Arachis hypogaea HOM05D000068 ORTHO05D000084 1.8e-08 62.8 73 47.9
Lj2g0024904 Lotus japonicus HOM05D000068 ORTHO05D000084 1.8e-08 62.8 70 42.9
MD09G1041500 Malus domestica HOM05D000068 ORTHO05D000084 1.8e-08 62.8 71 47.9
vmacro18220 Vaccinium macrocarpon HOM05D000068 ORTHO05D000084 1.8e-08 62.8 78 42.3
Aqoxy3G03160 Aquilegia oxysepala HOM05D000068 ORTHO05D000084 2.4e-08 62.4 71 40.8
Potri.017G074000 Populus trichocarpa HOM05D000068 ORTHO05D000084 2.4e-08 62.4 70 48.6
Medtr6g008820 Medicago truncatula HOM05D000068 ORTHO05D000084 3.1e-08 62.0 67 46.3
Thhalv10011187m.g Eutrema salsugineum HOM05D000068 ORTHO05D000084 4.1e-08 61.6 73 46.6
Manes.15G176240 Manihot esculenta HOM05D000068 ORTHO05D000084 4.1e-08 61.6 51 56.9
AL5G17950 Arabidopsis lyrata HOM05D000068 ORTHO05D000084 5.4e-08 61.2 73 45.2
MD17G1042800 Malus domestica HOM05D000068 ORTHO05D000084 5.4e-08 61.2 71 47.9
QL02p079227 Quercus lobata HOM05D000068 ORTHO05D000084 5.4e-08 61.2 78 43.6
RcHm_v2.0_Chr2g0169841 Rosa chinensis HOM05D000068 ORTHO05D000084 5.4e-08 61.2 72 43.1
Sabra17G0064600 Salix brachista HOM05D000068 ORTHO05D000084 5.4e-08 61.2 70 47.1
FvH4_6g49760 Fragaria vesca HOM05D000068 ORTHO05D000084 7.0e-08 60.8 72 43.1
FAN09G1407 Fragaria x ananassa HOM05D000068 ORTHO05D000084 7.0e-08 60.8 72 43.1
FAN14G4641 Fragaria x ananassa HOM05D000068 ORTHO05D000084 7.0e-08 60.8 72 43.1
Medtr6g008800 Medicago truncatula HOM05D000068 ORTHO05D000084 7.0e-08 60.8 66 43.9
Medtr6g009200 Medicago truncatula HOM05D000068 ORTHO05D000084 7.0e-08 60.8 72 43.1
Medtr7g051100 Medicago truncatula HOM05D000068 ORTHO05D000084 7.0e-08 60.8 64 46.9
Thhalv10003530m.g Eutrema salsugineum HOM05D000068 ORTHO05D000084 9.2e-08 60.5 51 62.7
SalBow1G6614 Salvia bowleyana HOM05D000068 ORTHO05D000084 9.2e-08 60.5 78 42.3
Glyma.19G016600 Glycine max HOM05D000068 ORTHO05D000084 1.2e-07 60.1 71 45.1
Medtr6g009150 Medicago truncatula HOM05D000068 ORTHO05D000084 1.2e-07 60.1 72 44.4
ATR1101G106 Amborella trichopoda HOM05D000068 ORTHO05D000084 1.6e-07 59.7 70 45.7
arahy.Tifrunner.gnm1.ann1.L9QF8B Arachis hypogaea HOM05D000068 ORTHO05D000084 1.6e-07 59.7 71 46.5
Psat1g077080 Pisum sativum HOM05D000068 ORTHO05D000084 1.6e-07 59.7 71 42.3
Potri.017G085000 Populus trichocarpa HOM05D000068 ORTHO05D000084 1.6e-07 59.7 74 45.9
Rhsim08G0063100 Rhododendron simsii HOM05D000068 ORTHO05D000084 1.6e-07 59.7 70 41.4
vmacro17883 Vaccinium macrocarpon HOM05D000068 ORTHO05D011548 1.6e-07 59.7 80 38.8
Manes.17G117227 Manihot esculenta HOM05D000068 ORTHO05D000084 2.0e-07 59.3 70 45.7
Nitab4.5_0006969g0040 Nicotiana tabacum HOM05D000068 ORTHO05D000084 2.0e-07 59.3 66 47.0
TAR629G2962 Trochodendron aralioides HOM05D000068 ORTHO05D000084 2.0e-07 59.3 50 54.0
BcaC06g33745 Brassica carinata HOM05D000068 ORTHO05D000084 2.7e-07 58.9 64 46.9
A06p40610 Brassica napus HOM05D000068 ORTHO05D000084 2.7e-07 58.9 54 55.6
C07p37390 Brassica napus HOM05D000068 ORTHO05D000084 2.7e-07 58.9 64 46.9
BolC7t44249H Brassica oleracea HOM05D000068 ORTHO05D000084 2.7e-07 58.9 64 46.9
BraA06t26980Z Brassica rapa HOM05D000068 ORTHO05D000084 2.7e-07 58.9 64 46.9
Ca_07434_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 2.7e-07 58.9 64 42.2
FAN02G4307 Fragaria x ananassa HOM05D000068 ORTHO05D000084 2.7e-07 58.9 66 43.9
Hma1.2p1_0849F.1_g228015 Hydrangea macrophylla HOM05D000068 ORTHO05D000084 2.7e-07 58.9 51 54.9
DCAR_011181 Daucus carota HOM05D000068 ORTHO05D000084 3.5e-07 58.5 70 48.6
MBI15_g38191_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D000084 3.5e-07 58.5 50 56.0
Rhsim08G0063500 Rhododendron simsii HOM05D000068 ORTHO05D000084 3.5e-07 58.5 66 43.9
Atru.chr8.2431 Acer truncatum HOM05D000068 ORTHO05D000084 4.5e-07 58.2 44 59.1
Gorai.001G258500 Gossypium raimondii HOM05D000068 ORTHO05D000084 4.5e-07 58.2 73 45.2
PGSC0003DMG400011613 Solanum tuberosum HOM05D000068 ORTHO05D000084 4.5e-07 58.2 61 52.5
PGSC0003DMG400038985 Solanum tuberosum HOM05D011876 ORTHO05D016331 4.5e-07 58.2 61 52.5
TPR.G26803 Trifolium pratense HOM05D000068 ORTHO05D000084 4.5e-07 58.2 72 44.4
Duzib147G1113 Durio zibethinus HOM05D000068 ORTHO05D000084 7.7e-07 57.4 74 44.6
Gohir.D07G224100 Gossypium hirsutum HOM05D000068 ORTHO05D000084 7.7e-07 57.4 73 45.2
PGR119G0629 Punica granatum HOM05D000068 ORTHO05D000084 7.7e-07 57.4 79 38.0
TPR.G32592 Trifolium pratense HOM05D000068 ORTHO05D011548 7.7e-07 57.4 79 39.2
AT3G28345 Arabidopsis thaliana HOM05D000068 ORTHO05D000084 1.0e-06 57.0 68 45.6
Ciclev10010930m.g Citrus clementina HOM05D000068 ORTHO05D000084 1.0e-06 57.0 57 49.1
PSO063G7334 Papaver somniferum HOM05D000068 ORTHO05D000084 1.0e-06 57.0 50 54.0
Prupe.3G275900 Prunus persica HOM05D000068 ORTHO05D000084 1.0e-06 57.0 50 54.0
Sed0027708 Sechium edule HOM05D000068 ORTHO05D000084 1.0e-06 57.0 66 45.5
Lj7C406T11 Lonicera japonica HOM05D000068 ORTHO05D000084 1.3e-06 56.6 67 44.8
PSO832G0465 Papaver somniferum HOM05D000068 ORTHO05D000084 1.3e-06 56.6 50 52.0
Rhsim08G0061800 Rhododendron simsii HOM05D000068 ORTHO05D000084 1.3e-06 56.6 77 39.0
Sc10g0004090 Simmondsia chinensis HOM05D000068 ORTHO05D000084 1.3e-06 56.6 46 54.3
SGA_v2.0_scaffold135G34805 Striga asiatica HOM05D000629 ORTHO05D000084 1.3e-06 56.6 76 42.1
AT3G28390 Arabidopsis thaliana HOM05D000068 ORTHO05D000084 1.7e-06 56.2 54 50.0
Eucgr.L02334 Eucalyptus grandis HOM05D000068 ORTHO05D000084 1.7e-06 56.2 71 43.7
Nn3g17051 Nelumbo nucifera HOM05D000068 ORTHO05D000084 1.7e-06 56.2 71 40.8
Carub.0005s0685 Capsella rubella HOM05D000068 ORTHO05D000084 2.3e-06 55.8 64 45.3
CARHR292580 Cardamine hirsuta HOM05D000068 ORTHO05D000084 2.3e-06 55.8 73 41.1
ClCG09G018580 Citrullus lanatus HOM05D000068 ORTHO05D000084 2.3e-06 55.8 66 43.9
Gorai.006G026800 Gossypium raimondii HOM05D000068 ORTHO05D000084 2.3e-06 55.8 74 44.6
Os02g0190300 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D000084 2.3e-06 55.8 62 46.8
unitig_0.g534 Utricularia gibba HOM05D000068 ORTHO05D000084 2.3e-06 55.8 82 39.0
A02p35890 Brassica napus HOM05D000068 ORTHO05D000084 2.9e-06 55.5 74 45.9
Ciclev10010936m.g Citrus clementina HOM05D000068 ORTHO05D000084 2.9e-06 55.5 41 58.5
Glyma.18G154200 Glycine max HOM05D000068 ORTHO05D000084 2.9e-06 55.5 59 42.4
Os02g0190000 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D000084 2.9e-06 55.5 68 42.6
Sabra17G0074900 Salix brachista HOM05D000068 ORTHO05D000084 2.9e-06 55.5 75 38.7
AT3G28360 Arabidopsis thaliana HOM05D000068 ORTHO05D000084 3.8e-06 55.1 52 51.9
BcaC03g17514 Brassica carinata HOM05D000068 ORTHO05D000084 3.8e-06 55.1 74 45.9
C02p54760 Brassica napus HOM05D000068 ORTHO05D000084 3.8e-06 55.1 74 45.9
BolC2t11537H Brassica oleracea HOM05D000068 ORTHO05D000084 3.8e-06 55.1 74 45.9
BraA02t08590Z Brassica rapa HOM05D000068 ORTHO05D000084 3.8e-06 55.1 74 45.9
HanXRQChr14g0449241 Helianthus annuus HOM05D000068 ORTHO05D000084 5.0e-06 54.7 77 33.8
Aa31sc1744G20 Aethionema arabicum HOM05D000068 ORTHO05D000084 6.6e-06 54.3 66 39.4
Duzib264G0586 Durio zibethinus HOM05D000068 ORTHO05D000084 6.6e-06 54.3 72 44.4
Eucgr.I01885 Eucalyptus grandis HOM05D000068 ORTHO05D000084 6.6e-06 54.3 72 40.3
Psat3g152400 Pisum sativum HOM05D000068 ORTHO05D000084 6.6e-06 54.3 64 42.2
Gohir.D09G022801 Gossypium hirsutum HOM05D000068 ORTHO05D000084 8.6e-06 53.9 74 43.2
HanXRQChr14g0449211 Helianthus annuus HOM05D000068 ORTHO05D000084 8.6e-06 53.9 76 34.2
Sc11g0006830 Simmondsia chinensis HOM05D000068 ORTHO05D000084 8.6e-06 53.9 51 47.1


User provided reference genes

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