Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2737.2 1382 100.0
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2554.2 1383 91.8
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2532.3 1383 91.3
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2531.9 1398 90.6
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2531.9 1383 91.3
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2530.4 1383 90.9
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2528.8 1382 90.7
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2526.5 1383 91.0
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2525.7 1382 90.8
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2525.0 1385 90.7
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2524.2 1382 90.7
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2523.4 1382 90.2
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2521.1 1382 90.5
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2518.0 1383 90.9
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2516.5 1385 90.1
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2514.6 1383 90.0
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2513.4 1382 89.8
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2506.5 1383 89.4
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2504.9 1383 90.8
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2504.9 1385 90.0
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2502.2 1384 90.3
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2501.5 1384 90.1
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2500.7 1385 89.2
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2500.3 1384 89.8
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2498.8 1382 88.8
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2497.6 1388 89.8
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2497.6 1383 89.4
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2496.8 1388 89.7
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2491.1 1382 89.8
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2488.8 1383 90.2
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2488.4 1383 89.2
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2487.6 1383 89.2
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2487.6 1386 89.1
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2484.5 1384 88.5
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2484.1 1385 89.1
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2484.1 1382 89.3
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2483.0 1398 88.5
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2482.2 1383 88.9
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2482.2 1383 89.5
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2482.2 1382 88.6
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2481.1 1383 88.6
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2481.1 1384 89.4
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2481.1 1383 88.9
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2480.3 1384 88.9
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2480.3 1384 88.9
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2479.1 1382 88.7
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2478.0 1383 88.5
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2477.2 1385 88.9
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2477.2 1382 88.6
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2475.7 1384 88.5
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2474.1 1384 88.4
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2468.7 1382 88.1
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2468.7 1382 88.4
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2466.0 1384 88.2
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2466.0 1386 87.7
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2464.9 1384 88.2
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2464.9 1382 88.3
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2461.0 1383 88.6
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2459.1 1383 88.4
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2458.7 1384 87.8
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2449.9 1384 87.4
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2449.1 1382 87.8
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2446.0 1382 87.8
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2445.6 1382 87.3
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2444.5 1382 87.6
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2444.5 1382 87.6
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2442.5 1382 88.6
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2441.4 1384 87.2
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2440.2 1382 87.9
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2437.9 1446 84.0
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2435.2 1385 86.9
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2434.4 1409 86.1
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2421.0 1393 86.1
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2418.7 1383 86.0
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2418.3 1383 86.0
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2417.5 1334 89.0
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2411.7 1382 87.0
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2410.2 1384 86.3
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2406.7 1384 86.7
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2404.4 1385 86.1
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2401.3 1386 86.1
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2399.8 1352 87.5
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2397.5 1386 85.9
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2395.5 1387 85.9
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2394.4 1384 85.8
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2392.8 1384 85.8
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2392.8 1384 85.8
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2392.1 1386 85.6
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2383.6 1384 85.7
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2383.6 1384 85.7
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2383.6 1384 85.7
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2348.9 1383 85.0
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2348.2 1408 84.6
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2343.5 1389 84.4
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2331.6 1382 84.2
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2327.4 1383 83.8
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2319.7 1400 82.1
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2285.4 1258 90.0
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2285.4 1331 83.9
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2264.2 1258 90.1
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2260.7 1261 88.8
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2192.2 1331 79.3
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2189.5 1347 81.9
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2180.6 1335 79.3
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2180.6 1334 80.6
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2164.4 1332 78.7
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2151.3 1331 78.9
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2151.3 1331 78.9
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2112.4 1380 80.7
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 2036.2 1120 90.0
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 2006.5 1108 89.7
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1903.6 1400 73.2
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1892.1 1332 69.8
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1863.6 1334 69.0
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1696.8 913 91.7
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1675.2 1382 64.7
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1630.5 896 90.1
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1495.3 808 91.1
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1493.4 809 90.9
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1145.2 690 83.0
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1112.4 675 82.1
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 1.6e-306 1056.6 669 80.3
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.2e-296 1023.8 571 86.5
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 3.1e-265 919.5 1199 44.6
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 4.9e-258 895.6 592 76.7
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 2.2e-234 817.0 470 86.0
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.9e-233 813.9 470 86.0
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 1.7e-231 807.4 471 85.6
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 7.1e-217 758.8 473 81.6
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.6e-200 704.5 398 86.2
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 2.0e-171 607.8 1375 31.5
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.5e-158 565.1 1464 29.6
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 1.7e-106 392.1 1279 27.1
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 4.8e-88 330.9 175 93.1
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 9.7e-65 253.4 147 85.0
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.8e-58 232.6 123 91.1
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.9e-44 186.0 116 81.9
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 2.3e-42 179.1 197 53.3
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 1.7e-29 136.3 139 50.4
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 5.0e-29 134.8 99 69.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 3.4e-25 122.1 91 68.1
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 8.6e-21 107.5 61 86.9


User provided reference genes

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