Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 2.0e-22 108.2 55 100.0
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 5.8e-22 106.7 55 98.2
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 3.0e-18 94.4 54 88.9
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 3.0e-18 94.4 54 87.0
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 3.9e-18 94.0 54 87.0
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 3.9e-18 94.0 52 90.4
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 3.9e-18 94.0 54 87.0
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 3.9e-18 94.0 53 86.8
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 6.7e-18 93.2 54 87.0
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 1.1e-17 92.4 54 85.2
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 1.1e-17 92.4 54 85.2
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.5e-17 92.0 54 85.2
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.9e-17 91.7 54 87.0
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 3.3e-17 90.9 55 78.2
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 3.3e-17 90.9 55 81.8
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 3.3e-17 90.9 54 85.2
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 4.3e-17 90.5 52 84.6
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 4.3e-17 90.5 53 84.9
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 5.7e-17 90.1 54 81.5
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 1.6e-16 88.6 54 83.3
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 1.6e-16 88.6 51 86.3
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 1.6e-16 88.6 54 85.2
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 3.7e-16 87.4 54 79.6
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 4.8e-16 87.0 52 82.7
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 4.8e-16 87.0 53 79.2
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 4.8e-16 87.0 54 85.2
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 4.8e-16 87.0 54 79.6
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 6.2e-16 86.7 54 79.6
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 6.2e-16 86.7 54 81.5
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 6.2e-16 86.7 54 81.5
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 8.2e-16 86.3 52 84.6
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 1.4e-15 85.5 54 79.6
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 1.4e-15 85.5 55 81.8
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 1.4e-15 85.5 55 83.6
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 1.4e-15 85.5 54 77.8
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 1.8e-15 85.1 54 77.8
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.8e-15 85.1 55 83.6
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 1.8e-15 85.1 55 81.8
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 4.0e-15 84.0 52 84.6
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 4.0e-15 84.0 52 84.6
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 4.0e-15 84.0 52 84.6
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 4.0e-15 84.0 54 77.8
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 5.3e-15 83.6 54 75.9
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 5.3e-15 83.6 55 81.8
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 5.3e-15 83.6 55 80.0
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 6.9e-15 83.2 54 79.6
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 6.9e-15 83.2 54 77.8
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 6.9e-15 83.2 54 77.8
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 9.0e-15 82.8 54 77.8
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 9.0e-15 82.8 55 81.8
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 1.2e-14 82.4 53 75.5
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 1.2e-14 82.4 54 74.1
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 1.2e-14 82.4 50 82.0
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 1.5e-14 82.0 55 81.8
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 1.5e-14 82.0 55 80.0
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 2.0e-14 81.6 54 75.9
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 2.0e-14 81.6 52 76.9
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 2.6e-14 81.3 55 76.4
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 2.6e-14 81.3 54 74.1
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 2.6e-14 81.3 53 79.2
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 2.6e-14 81.3 51 76.5
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 2.6e-14 81.3 55 78.2
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 3.4e-14 80.9 52 78.8
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 4.5e-14 80.5 54 74.1
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 7.6e-14 79.7 55 74.5
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 7.6e-14 79.7 54 75.9
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 1.3e-13 79.0 52 82.7
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 2.9e-13 77.8 54 77.8
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 6.5e-13 76.6 51 78.4
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 6.5e-13 76.6 49 81.6
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 8.4e-13 76.3 49 81.6
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 1.4e-12 75.5 47 78.7
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 2.5e-12 74.7 51 84.3
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 7.1e-12 73.2 49 77.6
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 9.3e-12 72.8 55 67.3
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 1.6e-11 72.0 52 75.0
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 1.6e-11 72.0 49 77.6
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 4.6e-11 70.5 49 75.5
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 4.6e-11 70.5 53 75.5
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.9e-10 67.4 55 63.6
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 5.1e-10 67.0 45 77.8
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 1.1e-09 65.9 46 78.3
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 2.5e-09 64.7 52 73.1
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 3.3e-09 64.3 44 79.5
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 3.3e-09 64.3 44 79.5
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 3.3e-09 64.3 44 79.5
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 3.3e-09 64.3 44 79.5
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 3.3e-09 64.3 44 79.5
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 4.3e-09 63.9 44 79.5
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 5.7e-09 63.5 52 73.1
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 1.6e-08 62.0 52 71.2
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 6.3e-08 60.1 50 66.0
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 1.2e-06 55.8 50 66.0


User provided reference genes

Program Settings