Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 2.3e-37 158.3 75 100.0
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 2.4e-34 148.3 72 97.2
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 4.1e-34 147.5 72 97.2
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 4.1e-34 147.5 71 94.4
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 4.1e-34 147.5 71 94.4
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 5.3e-34 147.1 71 94.4
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 6.9e-34 146.7 71 95.8
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 6.9e-34 146.7 71 95.8
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 9.1e-34 146.4 72 93.1
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 9.1e-34 146.4 72 93.1
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 1.2e-33 146.0 72 93.1
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 1.2e-33 146.0 71 94.4
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 1.2e-33 146.0 71 95.8
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.2e-33 146.0 71 94.4
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.2e-33 146.0 71 94.4
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 1.2e-33 146.0 71 94.4
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 1.2e-33 146.0 71 94.4
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 1.2e-33 146.0 71 94.4
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 1.5e-33 145.6 71 93.0
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 2.6e-33 144.8 72 93.1
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 2.6e-33 144.8 72 93.1
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 2.6e-33 144.8 72 91.7
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 3.4e-33 144.4 72 91.7
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 3.4e-33 144.4 72 93.1
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 4.5e-33 144.1 72 93.1
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 4.5e-33 144.1 72 91.7
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 5.9e-33 143.7 72 93.1
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 5.9e-33 143.7 72 93.1
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 5.9e-33 143.7 72 93.1
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 5.9e-33 143.7 72 93.1
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 5.9e-33 143.7 72 91.7
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 5.9e-33 143.7 72 93.1
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 7.7e-33 143.3 72 91.7
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 7.7e-33 143.3 72 91.7
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 7.7e-33 143.3 72 90.3
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 7.7e-33 143.3 72 91.7
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 7.7e-33 143.3 71 91.5
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 1.0e-32 142.9 71 94.4
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.0e-32 142.9 72 91.7
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.0e-32 142.9 72 91.7
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 1.0e-32 142.9 72 91.7
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.0e-32 142.9 72 93.1
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 1.0e-32 142.9 71 93.0
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 93.1
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 90.3
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 90.3
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 90.3
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 1.3e-32 142.5 71 91.5
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 88.9
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 88.9
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 1.3e-32 142.5 72 91.7
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.3e-32 142.5 71 93.0
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 1.7e-32 142.1 71 90.1
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 1.7e-32 142.1 72 91.7
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.7e-32 142.1 72 91.7
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 1.7e-32 142.1 72 91.7
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 1.7e-32 142.1 72 90.3
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 1.7e-32 142.1 71 90.1
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 2.2e-32 141.7 72 90.3
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 2.2e-32 141.7 72 90.3
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 2.2e-32 141.7 72 90.3
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 2.9e-32 141.4 72 91.7
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 2.9e-32 141.4 72 90.3
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 2.9e-32 141.4 72 90.3
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 2.9e-32 141.4 72 91.7
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 3.8e-32 141.0 69 94.2
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 5.0e-32 140.6 75 88.0
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 5.0e-32 140.6 72 90.3
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 6.5e-32 140.2 71 91.5
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 6.5e-32 140.2 71 91.5
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 1.1e-31 139.4 72 88.9
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 1.1e-31 139.4 72 88.9
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 1.1e-31 139.4 72 88.9
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 1.1e-31 139.4 72 88.9
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.1e-31 139.4 72 88.9
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 1.1e-31 139.4 72 88.9
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 1.1e-31 139.4 70 91.4
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.4e-31 139.0 70 92.9
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 1.4e-31 139.0 72 88.9
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 1.4e-31 139.0 72 90.3
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 1.4e-31 139.0 72 88.9
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 1.4e-31 139.0 70 91.4
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 1.4e-31 139.0 72 88.9
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.4e-31 139.0 72 88.9
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.4e-31 139.0 72 88.9
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 1.4e-31 139.0 72 88.9
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 1.4e-31 139.0 72 88.9
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 2.5e-31 138.3 69 91.3
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 2.5e-31 138.3 72 87.5
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 2.5e-31 138.3 72 87.5
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 3.2e-31 137.9 72 87.5
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 3.2e-31 137.9 72 88.9
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 3.2e-31 137.9 72 88.9
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 3.2e-31 137.9 72 90.3
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 4.2e-31 137.5 72 88.9
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 7.2e-31 136.7 72 86.1
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 7.2e-31 136.7 72 87.5
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 1.6e-30 135.6 72 86.1
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 1.6e-30 135.6 72 87.5
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 1.6e-30 135.6 72 87.5
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 2.1e-30 135.2 72 83.3
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 2.7e-30 134.8 72 84.7
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 3.6e-30 134.4 70 88.6
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 3.6e-30 134.4 70 87.1
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 6.1e-30 133.7 72 83.3
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 6.1e-30 133.7 72 84.7
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 6.1e-30 133.7 72 83.3
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 7.9e-30 133.3 72 84.7
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 7.9e-30 133.3 72 84.7
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 3.9e-29 131.0 72 83.3
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 2.0e-28 128.6 63 95.2
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 3.3e-28 127.9 71 81.7
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 9.7e-28 126.3 63 93.7
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 3.7e-27 124.4 71 84.5
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 2.5e-23 111.7 73 78.1
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 3.2e-23 111.3 67 79.1
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 8.0e-22 106.7 72 75.0
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.0e-21 106.3 68 73.5
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.4e-21 105.9 68 73.5
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 6.7e-21 103.6 70 68.6
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 8.8e-21 103.2 48 91.7
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 1.1e-20 102.8 55 80.0
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 1.3e-19 99.4 72 68.1
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 6.3e-19 97.1 45 93.3
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 1.8e-18 95.5 66 69.7
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 1.9e-15 85.5 48 85.4
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 2.2e-11 72.0 45 80.0
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 1.8e-10 68.9 69 50.7
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 7.0e-10 67.0 68 50.0
CSS0009466 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 8.5e-08 60.1 30 83.3
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 1.6e-06 55.8 58 46.6


User provided reference genes

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