Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 0.0e+00 1312.7 718 100.0
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 9.7e-117 425.2 774 43.5
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 2.8e-108 397.1 762 40.9
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 1.0e-102 378.6 728 42.6
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 3.1e-99 367.1 695 43.3
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 3.5e-98 363.6 792 39.5
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 3.8e-97 360.1 793 40.4
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 3.2e-96 357.1 684 42.5
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 3.6e-95 353.6 627 44.0
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 8.0e-95 352.4 765 41.6
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.4e-91 340.9 737 40.4
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 5.2e-86 323.2 732 40.4
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 9.8e-85 318.9 754 39.4
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.6e-82 311.6 729 39.2
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 2.0e-82 311.2 744 38.7
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 2.3e-81 307.8 753 38.4
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.1e-80 305.4 726 38.3
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.5e-80 305.1 725 37.4
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 3.0e-78 297.4 741 37.2
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 6.8e-78 296.2 732 37.4
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.1e-75 288.9 741 36.7
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.8e-75 288.1 741 37.1
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 7.0e-75 286.2 739 36.0
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 7.3e-72 276.2 715 35.8
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 9.5e-72 275.8 730 35.6
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 3.6e-71 273.9 743 38.1
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 1.4e-70 271.9 744 38.3
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 2.3e-70 271.2 695 37.1
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 2.3e-70 271.2 700 35.7
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.3e-70 271.2 700 35.7
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 3.0e-70 270.8 727 35.8
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 6.8e-70 269.6 724 36.2
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 6.8e-70 269.6 781 34.6
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 1.5e-69 268.5 630 39.5
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 4.4e-69 266.9 732 36.1
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 2.9e-68 264.2 771 35.9
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 4.9e-68 263.5 659 37.6
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 8.3e-68 262.7 718 37.7
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 4.1e-67 260.4 791 32.4
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 4.6e-66 256.9 508 41.3
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 6.0e-66 256.5 760 33.0
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 5.0e-65 253.4 532 41.2
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 6.6e-65 253.1 716 34.5
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 3.3e-64 250.8 728 34.9
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 1.2e-63 248.8 712 34.7
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.2e-63 248.8 817 33.2
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 2.1e-63 248.1 537 39.5
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 3.6e-63 247.3 741 36.4
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 1.1e-62 245.7 813 32.8
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 3.1e-62 244.2 726 34.4
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 3.1e-62 244.2 715 35.2
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 8.9e-62 242.7 199 67.3
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 1.5e-61 241.9 707 35.9
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 9.8e-61 239.2 561 38.5
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.1e-59 235.7 764 34.2
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 1.4e-59 235.3 693 36.5
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 3.2e-59 234.2 742 36.7
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 5.4e-59 233.4 750 35.1
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 7.0e-59 233.0 713 33.5
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 7.0e-59 233.0 705 34.6
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.6e-58 231.9 511 38.4
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 1.6e-58 231.9 703 32.9
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 1.0e-57 229.2 311 48.9
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 1.7e-57 228.4 246 54.9
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.7e-57 228.4 720 33.3
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.0e-57 227.6 661 36.5
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 8.6e-57 226.1 694 33.7
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 1.6e-55 221.9 705 34.9
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 1.8e-54 218.4 713 32.5
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 4.0e-54 217.2 739 32.6
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 1.2e-53 215.7 713 31.6
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 1.2e-53 215.7 722 32.7
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 7.5e-53 213.0 746 32.6
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 1.3e-52 212.2 595 37.0
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 1.9e-51 208.4 819 30.3
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 2.4e-51 208.0 734 29.8
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 3.2e-51 207.6 695 32.2
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 3.2e-51 207.6 607 34.4
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 7.1e-51 206.5 758 30.5
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 2.3e-49 201.4 679 34.8
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 8.6e-49 199.5 744 32.5
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 1.1e-48 199.1 510 39.8
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 1.9e-48 198.4 814 31.0
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 2.5e-48 198.0 568 34.5
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.3e-48 197.6 226 54.4
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 7.3e-48 196.4 595 31.6
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 2.8e-47 194.5 751 30.4
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 3.6e-47 194.1 549 33.7
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 1.1e-46 192.6 745 31.4
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 6.4e-44 183.3 613 35.6
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 2.4e-43 181.4 818 30.2
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 7.1e-43 179.9 590 33.4
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 1.6e-42 178.7 769 30.3
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 2.1e-42 178.3 715 30.3
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 4.6e-42 177.2 581 33.9
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 6.0e-42 176.8 581 33.9
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 2.3e-41 174.9 621 31.6
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 6.6e-41 173.3 859 27.8
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 1.1e-40 172.6 581 33.0
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 1.5e-40 172.2 574 35.9
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 5.6e-40 170.2 631 33.8
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 7.3e-40 169.9 330 39.1
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 2.8e-39 167.9 544 35.7
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 2.4e-38 164.9 525 32.2
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 6.9e-38 163.3 629 32.8
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 1.2e-37 162.5 593 34.9
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 2.2e-36 158.3 707 29.7
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 7.1e-35 153.3 679 31.5
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 4.6e-34 150.6 644 31.1
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 2.1e-31 141.7 77 79.2
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 2.4e-30 138.3 559 29.9
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 8.4e-28 129.8 543 29.5
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 2.3e-25 121.7 651 28.1
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 8.7e-25 119.8 516 28.7
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 1.9e-24 118.6 695 27.1
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 4.3e-24 117.5 418 32.8
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 4.0e-22 110.9 509 26.9
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 4.5e-21 107.5 143 49.7
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.3e-20 105.9 524 30.3
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.8e-20 104.4 285 35.4
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 1.1e-19 102.8 113 50.4
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.7e-18 98.2 392 32.4
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 3.7e-15 87.8 148 41.2
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 8.2e-15 86.7 42 78.6
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 5.3e-14 84.0 116 51.7
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 1.4e-11 75.9 75 52.0
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 7.9e-10 70.1 98 45.9
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 1.3e-07 62.8 60 56.7
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 1.6e-07 62.4 72 41.7
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 2.8e-07 61.6 48 54.2
vmacro05756 Vaccinium macrocarpon HOM05D060962 ORTHO05D005551 8.2e-07 60.1 62 43.5
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 8.2e-07 60.1 40 72.5


User provided reference genes

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