Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu008545.1 Olea europaea HOM05D003429 ORTHO05D003873 6.1e-61 237.3 118 100.0
Ciclev10000149m.g Citrus clementina HOM05D003429 ORTHO05D003873 2.8e-53 211.8 118 87.3
Manes.04G153600 Manihot esculenta HOM05D003429 ORTHO05D003873 6.2e-53 210.7 118 86.4
Dinv04984 Davidia involucrata HOM05D003429 ORTHO05D003873 8.0e-53 210.3 118 85.6
GSVIVG01012453001 Vitis vinifera HOM05D003429 ORTHO05D003873 2.3e-52 208.8 118 84.7
Dinv03754 Davidia involucrata HOM05D003429 ORTHO05D003873 4.0e-52 208.0 118 85.6
HanXRQChr16g0510451 Helianthus annuus HOM05D003429 ORTHO05D003873 4.0e-52 208.0 118 83.9
Sabra01G0025100 Salix brachista HOM05D003429 ORTHO05D003873 4.0e-52 208.0 118 84.7
Potri.001G036100 Populus trichocarpa HOM05D003429 ORTHO05D003873 1.2e-51 206.5 118 83.9
Thecc.10G129100 Theobroma cacao HOM05D003429 ORTHO05D003873 2.0e-51 205.7 118 82.2
ECA248G1206 Erigeron canadensis HOM05D003429 ORTHO05D003873 2.6e-51 205.3 117 82.9
QL04p022451 Quercus lobata HOM05D003429 ORTHO05D003873 2.6e-51 205.3 117 82.9
Potri.003G189500 Populus trichocarpa HOM05D003429 ORTHO05D003873 3.4e-51 204.9 118 83.1
Gohir.A10G192300 Gossypium hirsutum HOM05D003429 ORTHO05D003873 4.4e-51 204.5 118 81.4
Gohir.D10G200200 Gossypium hirsutum HOM05D003429 ORTHO05D003873 4.4e-51 204.5 118 81.4
Gorai.011G224400 Gossypium raimondii HOM05D003429 ORTHO05D003873 4.4e-51 204.5 118 81.4
AL6G16070 Arabidopsis lyrata HOM05D003429 ORTHO05D003873 5.8e-51 204.1 118 83.1
MSTRG.20488 Avicennia marina HOM05D003429 ORTHO05D003873 5.8e-51 204.1 118 83.1
Prupe.2G050900 Prunus persica HOM05D003429 ORTHO05D003873 5.8e-51 204.1 118 83.1
TAR629G1055 Trochodendron aralioides HOM05D003429 ORTHO05D003873 5.8e-51 204.1 118 84.7
RcHm_v2.0_Chr1g0329811 Rosa chinensis HOM05D003429 ORTHO05D003873 7.5e-51 203.8 118 83.1
Sp6g36790 Schrenkiella parvula HOM05D003429 ORTHO05D003873 9.8e-51 203.4 118 83.1
CANSAT56G3732 Cannabis sativa HOM05D003429 ORTHO05D003873 1.3e-50 203.0 118 83.9
Migut.B01173 Erythranthe guttata HOM05D003429 ORTHO05D003873 1.3e-50 203.0 118 80.5
Eucgr.G03181 Eucalyptus grandis HOM05D003429 ORTHO05D003873 1.3e-50 203.0 118 84.7
BcaB05g21683 Brassica carinata HOM05D003429 ORTHO05D003873 1.7e-50 202.6 118 82.2
C02p02580 Brassica napus HOM05D003429 ORTHO05D003873 1.7e-50 202.6 118 82.2
Carub.0006s0499 Capsella rubella HOM05D003429 ORTHO05D003873 1.7e-50 202.6 117 82.9
CiPaw.13G018300 Carya illinoinensis HOM05D003429 ORTHO05D003873 1.7e-50 202.6 118 83.1
FvH4_7g04530 Fragaria vesca HOM05D003429 ORTHO05D003873 2.2e-50 202.2 118 82.2
FAN10G0722 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.2e-50 202.2 118 82.2
Prupe.2G051400 Prunus persica HOM05D003429 ORTHO05D003873 2.2e-50 202.2 118 82.2
PGR031G2936 Punica granatum HOM05D003429 ORTHO05D003873 2.2e-50 202.2 118 82.2
SGA_v2.0_scaffold164G38141 Striga asiatica HOM05D003429 ORTHO05D003873 2.2e-50 202.2 118 81.4
AT5G06120 Arabidopsis thaliana HOM05D003429 ORTHO05D003873 3.7e-50 201.4 118 81.4
arahy.Tifrunner.gnm1.ann1.3RNG04 Arachis hypogaea HOM05D003429 ORTHO05D003873 4.9e-50 201.1 118 80.5
arahy.Tifrunner.gnm1.ann1.P7SNS1 Arachis hypogaea HOM05D003429 ORTHO05D003873 6.4e-50 200.7 118 79.7
Atru.chr12.1194 Acer truncatum HOM05D003429 ORTHO05D003873 8.3e-50 200.3 118 82.2
Duzib114G0344 Durio zibethinus HOM05D003429 ORTHO05D003873 8.3e-50 200.3 118 81.4
Oeu013041.2 Olea europaea HOM05D003429 ORTHO05D003873 8.3e-50 200.3 118 81.4
TWI63G1019 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 8.3e-50 200.3 118 81.4
Lalb_Chr11g0061181 Lupinus albus HOM05D003429 ORTHO05D003873 1.1e-49 199.9 118 80.5
Lj1g0005148 Lotus japonicus HOM05D003429 ORTHO05D003873 1.4e-49 199.5 118 79.7
MBI19_g25231_MAGBIO Magnolia biondii HOM05D003429 ORTHO05D003873 1.4e-49 199.5 118 81.4
Sc09g0004760 Simmondsia chinensis HOM05D003429 ORTHO05D003873 1.9e-49 199.1 118 79.7
Ca_15294_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 2.4e-49 198.7 118 79.7
MELO3C011384.2 Cucumis melo HOM05D003429 ORTHO05D003873 3.2e-49 198.4 118 80.5
CsaV3_6G035760 Cucumis sativus L. HOM05D003429 ORTHO05D003873 3.2e-49 198.4 118 80.5
FAN03G0932 Fragaria x ananassa HOM05D003429 ORTHO05D003873 3.2e-49 198.4 115 81.7
CARHR206820 Cardamine hirsuta HOM05D003429 ORTHO05D003873 5.4e-49 197.6 117 80.3
Phvul.009G118700 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 5.4e-49 197.6 118 78.8
TPR.G38508 Trifolium pratense HOM05D003429 ORTHO05D003873 5.4e-49 197.6 118 78.8
FAN01G2134 Fragaria x ananassa HOM05D003429 ORTHO05D003873 7.0e-49 197.2 124 79.0
FAN06G0150 Fragaria x ananassa HOM05D003429 ORTHO05D003873 7.0e-49 197.2 124 79.0
BraA02t04869Z Brassica rapa HOM05D003429 ORTHO05D003873 1.6e-48 196.1 124 78.2
PSO339G2530 Papaver somniferum HOM05D003429 ORTHO05D003873 1.6e-48 196.1 118 79.7
PSO384G1706 Papaver somniferum HOM05D003429 ORTHO05D003873 1.6e-48 196.1 118 79.7
FAN06G3547 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.0e-48 195.7 124 78.2
Glyma.04G003000 Glycine max HOM05D003429 ORTHO05D003873 2.0e-48 195.7 118 77.1
VMungo1309G0597 Vigna mungo HOM05D003429 ORTHO05D003873 2.7e-48 195.3 118 78.8
Medtr3g118040 Medicago truncatula HOM05D003429 ORTHO05D003873 4.6e-48 194.5 118 78.0
Sed0026988 Sechium edule HOM05D003429 ORTHO05D003873 4.6e-48 194.5 118 78.8
BolC2t06224H Brassica oleracea HOM05D003429 ORTHO05D003873 1.3e-47 193.0 132 73.5
THA.LOC104816588 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 1.3e-47 193.0 118 77.1
Aqoxy5G00851 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 2.3e-47 192.2 118 78.0
Glyma.06G003000 Glycine max HOM05D003429 ORTHO05D003873 2.3e-47 192.2 120 76.7
CDE07G0955 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 3.0e-47 191.8 118 78.8
Cc00_g07020 Coffea canephora HOM05D003429 ORTHO05D003873 3.9e-47 191.4 125 74.4
THA.LOC104826824 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 5.0e-47 191.0 118 78.0
MD02G1207800 Malus domestica HOM05D003429 ORTHO05D003873 8.6e-47 190.3 118 76.3
MD07G1118000 Malus domestica HOM05D003429 ORTHO05D003873 8.6e-47 190.3 118 76.3
Aqoxy1G01517 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 5.6e-46 187.6 118 76.3
Thhalv10012516m.g Eutrema salsugineum HOM05D003429 ORTHO05D003873 5.6e-46 187.6 149 65.8
vmacro07588 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 5.6e-46 187.6 118 72.9
vmacro07757 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 5.6e-46 187.6 118 72.9
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 9.5e-46 186.8 118 72.9
A10p30310 Brassica napus HOM05D003429 ORTHO05D003873 1.2e-45 186.4 118 77.1
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.6e-45 186.0 118 72.9
Psat5g001960 Pisum sativum HOM05D003429 ORTHO05D003873 1.6e-45 186.0 118 73.7
BcaC06g32321 Brassica carinata HOM05D003429 ORTHO05D003873 2.8e-45 185.3 118 76.3
C09p70720 Brassica napus HOM05D003429 ORTHO05D003873 2.8e-45 185.3 118 76.3
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 1.4e-44 183.0 118 70.3
SalBow5G1634 Salvia bowleyana HOM05D003429 ORTHO05D003873 1.4e-44 183.0 121 74.4
unitig_22.g5335 Utricularia gibba HOM05D003429 ORTHO05D003873 1.8e-44 182.6 118 74.6
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 2.3e-44 182.2 116 74.1
Pp3c5_25610 Physcomitrium patens HOM05D003429 ORTHO05D003873 2.3e-44 182.2 116 74.1
Peaxi162Scf00139g01028 Petunia axillaris HOM05D003429 ORTHO05D003873 4.0e-44 181.4 117 70.9
BraA10t45069Z Brassica rapa HOM05D003429 ORTHO05D003873 1.5e-43 179.5 125 72.8
Lsat_1_v5_gn_1_118001 Lactuca sativa HOM05D003429 ORTHO05D003873 1.5e-43 179.5 118 76.3
HPP92_028456 Vanilla planifolia HOM05D003429 ORTHO05D003873 2.0e-43 179.1 118 72.0
HPP92_028715 Vanilla planifolia HOM05D003429 ORTHO05D003873 2.0e-43 179.1 118 72.0
BolC9t59828H Brassica oleracea HOM05D003429 ORTHO05D003873 3.4e-43 178.3 125 72.0
BcaC06g32583 Brassica carinata HOM05D000478 ORTHO05D000345 4.4e-43 177.9 114 75.4
Zm00001eb278500 Zea mays HOM05D003429 ORTHO05D003873 5.8e-43 177.6 117 71.8
Os03g0616700 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 7.5e-43 177.2 115 72.2
Sopen01g020360 Solanum pennellii HOM05D003429 ORTHO05D003873 7.5e-43 177.2 117 69.2
Solyc01g056520.3 Solanum lycopersicum HOM05D003429 ORTHO05D003873 1.7e-42 176.0 117 68.4
EL10Ac4g08832 Beta vulgaris HOM05D003429 ORTHO05D003873 3.7e-42 174.9 108 76.9
GSVIVG01021243001 Vitis vinifera HOM05D003429 ORTHO05D003873 3.7e-42 174.9 118 72.0
TWI53G2015 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 1.3e-39 166.4 118 66.1
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 6.6e-39 164.1 114 65.8
Hund06843 Selenicereus undatus HOM05D003429 ORTHO05D003873 1.2e-37 159.8 185 49.2
Phvul.007G243600 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 1.5e-35 152.9 118 63.6
DCAR_013522 Daucus carota HOM05D003429 ORTHO05D003873 2.6e-35 152.1 117 59.8
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 2.6e-35 152.1 114 63.2
SMO367G0627 Selaginella moellendorffii HOM05D003429 ORTHO05D003873 2.9e-34 148.7 127 55.9
Manes.03G089519 Manihot esculenta HOM05D003429 ORTHO05D003873 8.4e-34 147.1 100 74.0
Manes.13G093344 Manihot esculenta HOM05D003429 ORTHO05D003873 8.4e-34 147.1 100 74.0
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 8.4e-34 147.1 118 61.0
Sc13g0000830 Simmondsia chinensis HOM05D003429 ORTHO05D003873 1.1e-33 146.7 118 61.9
Nitab4.5_0000211g0050 Nicotiana tabacum HOM05D003429 ORTHO05D003873 1.4e-33 146.4 91 74.7
Ca_29535_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 1.9e-33 146.0 118 60.2
Nitab4.5_0002094g0070 Nicotiana tabacum HOM05D003429 ORTHO05D003873 3.2e-33 145.2 91 73.6
QL07p014239 Quercus lobata HOM05D003429 ORTHO05D003873 3.2e-33 145.2 133 56.4
Lalb_Chr02g0156721 Lupinus albus HOM05D003429 ORTHO05D003873 4.1e-33 144.8 118 61.9
Medtr1g051125 Medicago truncatula HOM05D003429 ORTHO05D003873 9.2e-33 143.7 118 61.0
AUR62018434 Chenopodium quinoa HOM05D003429 ORTHO05D003873 6.0e-32 141.0 118 58.5
PRCOL_00000821 Prasinoderma coloniale HOM05D003429 ORTHO05D003873 6.0e-32 141.0 113 62.8
AUR62020999 Chenopodium quinoa HOM05D003429 ORTHO05D003873 1.0e-31 140.2 118 58.5
GSVIVG01025856001 Vitis vinifera HOM05D003429 ORTHO05D003873 1.0e-31 140.2 91 72.5
Glyma.10G104900 Glycine max HOM05D003429 ORTHO05D003873 1.3e-31 139.8 118 57.6
TPR.G13799 Trifolium pratense HOM05D003429 ORTHO05D003873 2.5e-30 135.6 118 56.8
MCO13G155 Micromonas commoda HOM05D003429 ORTHO05D003873 4.7e-29 131.3 100 61.0
Cre02.g141506 Chlamydomonas reinhardtii HOM05D003429 ORTHO05D003873 1.1e-28 130.2 116 53.4
Manes.11G010000 Manihot esculenta HOM05D003429 ORTHO05D003873 9.9e-27 123.6 72 81.9
Psat6g086480 Pisum sativum HOM05D003429 ORTHO05D003873 1.7e-26 122.9 102 60.8
Aa31LG11G7100 Aethionema arabicum HOM05D003429 ORTHO05D003873 3.8e-26 121.7 80 73.8
Duzib128G2024 Durio zibethinus HOM05D003429 ORTHO05D003873 3.2e-25 118.6 72 75.0
DCAR_022673 Daucus carota HOM05D003429 ORTHO05D003873 7.1e-25 117.5 72 79.2
HPP92_028707 Vanilla planifolia HOM05D003429 ORTHO05D003873 1.6e-24 116.3 80 67.5
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.1e-22 110.2 66 72.7
Nn1g02902 Nelumbo nucifera HOM05D003429 ORTHO05D003873 3.6e-21 105.1 60 80.0
Manes.13G089800 Manihot esculenta HOM05D003429 ORTHO05D003873 8.1e-21 104.0 63 81.0
AUR62035521 Chenopodium quinoa HOM05D003429 ORTHO05D003873 9.0e-20 100.5 63 77.8
ATR0782G154 Amborella trichopoda HOM05D003429 ORTHO05D003873 1.7e-18 96.3 59 74.6
Lsat_1_v5_gn_8_67461 Lactuca sativa HOM05D003429 ORTHO05D003873 1.7e-18 96.3 60 75.0
SHI25005 Sapria himalayana HOM05D003429 ORTHO05D003873 4.2e-17 91.7 82 54.9
FAN10G3011 Fragaria x ananassa HOM05D003429 ORTHO05D003873 3.9e-15 85.1 47 85.1
Ca_14866_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 3.3e-14 82.0 71 53.5
Os01g0278200 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 1.3e-13 80.1 46 78.3
VMungo0720G3126 Vigna mungo HOM05D003429 ORTHO05D003873 1.3e-10 70.1 70 50.0
CBR_g30950 Chara braunii HOM05D003429 ORTHO05D003873 2.2e-10 69.3 51 62.7
EL10Ac3g07341 Beta vulgaris HOM05D003429 ORTHO05D003873 2.4e-09 65.9 117 34.2
AUR62041296 Chenopodium quinoa HOM05D003429 ORTHO05D003873 7.9e-08 60.8 34 79.4
Ah.04g150250 Amaranthus hybridus HOM05D003429 ORTHO05D003873 1.5e-06 56.6 59 52.5


User provided reference genes

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