Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 2.7e-200 701.8 361 100.0
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 8.4e-69 265.0 262 59.9
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 8.4e-69 265.0 262 59.9
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 3.0e-66 256.5 237 62.9
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 8.7e-66 255.0 274 56.2
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 5.6e-65 252.3 237 61.2
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 2.1e-64 250.4 274 56.2
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 2.8e-64 250.0 237 60.8
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 3.7e-64 249.6 274 60.6
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 4.8e-64 249.2 237 61.2
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 4.8e-64 249.2 237 60.8
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 6.2e-64 248.8 234 61.1
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 1.8e-63 247.3 283 55.1
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 3.1e-63 246.5 275 56.0
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 5.3e-63 245.7 274 58.0
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 6.9e-63 245.4 178 73.0
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 2.0e-62 243.8 260 58.1
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 2.6e-62 243.4 229 62.0
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 7.6e-62 241.9 237 58.6
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.0e-61 241.5 229 61.6
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.7e-61 240.7 274 53.3
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 2.9e-61 240.0 229 60.7
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 4.9e-61 239.2 262 58.4
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.4e-60 237.7 248 57.7
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 3.2e-60 236.5 236 58.9
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 9.3e-60 235.0 237 58.2
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 9.3e-60 235.0 237 58.2
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 1.2e-59 234.6 237 57.8
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 3.5e-59 233.0 274 52.2
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 3.5e-59 233.0 229 59.4
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 4.6e-59 232.6 267 55.1
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 6.0e-59 232.3 273 53.1
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 6.0e-59 232.3 267 56.6
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 7.9e-59 231.9 265 54.3
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 7.9e-59 231.9 262 55.3
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 2.3e-58 230.3 230 60.0
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 6.7e-58 228.8 229 58.5
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 6.7e-58 228.8 247 55.5
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 8.7e-58 228.4 226 58.0
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 1.9e-57 227.3 270 54.8
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 2.5e-57 226.9 229 58.1
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.5e-57 226.9 265 54.0
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 2.5e-57 226.9 235 57.9
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 1.6e-56 224.2 272 51.8
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 2.8e-56 223.4 262 58.8
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 4.8e-56 222.6 228 59.6
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 6.3e-56 222.2 279 52.0
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 6.3e-56 222.2 232 59.5
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 1.4e-55 221.1 230 56.5
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 2.4e-55 220.3 274 51.8
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 3.1e-55 219.9 267 53.6
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 6.9e-55 218.8 180 67.8
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 2.0e-54 217.2 264 52.3
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 3.4e-54 216.5 229 56.8
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 4.5e-54 216.1 236 55.5
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 5.9e-54 215.7 263 52.5
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 7.6e-54 215.3 229 57.2
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 7.6e-54 215.3 237 54.0
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 5.0e-53 212.6 241 53.9
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 6.5e-53 212.2 216 58.8
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 6.5e-53 212.2 236 55.1
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 8.5e-53 211.8 213 58.7
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 1.1e-52 211.5 232 54.7
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.4e-52 211.1 239 56.5
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 1.9e-52 210.7 173 68.2
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 3.2e-52 209.9 248 54.8
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 3.2e-52 209.9 250 54.0
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 4.2e-52 209.5 267 51.3
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.2e-51 208.0 265 50.6
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 1.2e-51 208.0 277 50.9
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 1.2e-51 208.0 237 54.0
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 6.1e-51 205.7 267 50.9
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 6.1e-51 205.7 267 51.3
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.3e-50 204.5 250 53.6
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 3.0e-50 203.4 216 58.3
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 6.7e-50 202.2 209 57.9
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 9.7e-49 198.4 230 53.0
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 6.9e-47 192.2 172 64.5
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 9.1e-47 191.8 172 64.5
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 1.2e-46 191.4 252 50.0
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 1.2e-46 191.4 251 50.6
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 3.4e-46 189.9 255 47.8
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 3.4e-46 189.9 254 46.9
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 3.4e-46 189.9 254 46.9
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.5e-46 189.5 172 62.2
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.0e-45 188.3 135 72.6
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 1.0e-45 188.3 294 46.6
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 1.3e-45 188.0 263 50.2
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 3.8e-45 186.4 250 49.6
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 4.2e-44 183.0 232 51.3
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 7.2e-44 182.2 210 54.8
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 1.6e-43 181.0 210 54.8
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 1.6e-43 181.0 210 54.8
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 2.1e-43 180.6 270 45.6
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 2.7e-43 180.3 235 47.7
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 3.6e-43 179.9 205 55.1
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 1.1e-41 174.9 213 51.6
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 1.1e-41 174.9 213 51.6
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 1.1e-41 174.9 213 51.6
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 7.4e-41 172.2 153 62.7
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 3.7e-40 169.9 389 36.8
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 4.8e-40 169.5 269 45.0
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 4.1e-39 166.4 242 47.9
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 7.7e-38 162.2 215 49.3
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 1.4e-36 157.9 279 42.7
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 1.4e-36 157.9 213 49.8
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 2.5e-36 157.1 163 60.1
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 3.2e-36 156.8 280 43.2
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.2e-36 156.8 139 61.2
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 2.1e-35 154.1 206 48.1
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 2.7e-35 153.7 148 58.8
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 7.9e-35 152.1 203 49.8
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 1.3e-32 144.8 211 47.4
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 5.0e-29 132.9 207 43.0
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 1.1e-28 131.7 226 43.4
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 3.0e-26 123.6 155 51.0
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.3e-24 118.2 127 58.3
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 1.8e-23 114.4 111 57.7
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 3.1e-23 113.6 133 51.1
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 6.1e-19 99.4 139 44.6
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 1.1e-15 88.6 239 35.6
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 2.7e-14 84.0 108 48.1
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 1.1e-12 78.6 235 34.0
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 1.5e-12 78.2 229 33.6
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 2.1e-11 74.3 138 44.2
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 4.7e-11 73.2 89 49.4
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.3e-08 65.1 73 50.7
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 4.1e-07 60.1 68 48.5
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 5.9e-06 56.2 59 52.5
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 7.8e-06 55.8 115 36.5


User provided reference genes

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