Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 3.6e-49 198.0 104 100.0
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 1.2e-20 103.2 55 96.4
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.6e-20 102.8 55 96.4
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 2.1e-20 102.4 55 94.5
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 2.1e-20 102.4 55 96.4
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.1e-20 102.4 55 94.5
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 4.6e-20 101.3 55 92.7
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 7.9e-20 100.5 55 90.9
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 7.9e-20 100.5 55 92.7
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 1.3e-19 99.8 55 92.7
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 1.8e-19 99.4 55 90.9
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 2.3e-19 99.0 55 92.7
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 2.3e-19 99.0 55 92.7
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 3.0e-19 98.6 58 89.7
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 5.1e-19 97.8 55 90.9
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 5.1e-19 97.8 55 87.3
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 5.1e-19 97.8 65 80.0
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 6.7e-19 97.4 55 87.3
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 6.7e-19 97.4 55 89.1
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 8.7e-19 97.1 55 90.9
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 8.7e-19 97.1 55 92.7
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 8.7e-19 97.1 55 92.7
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 8.7e-19 97.1 55 90.9
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 8.7e-19 97.1 55 90.9
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 8.7e-19 97.1 52 96.2
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 1.1e-18 96.7 55 89.1
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 1.5e-18 96.3 55 85.5
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 1.9e-18 95.9 55 90.9
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 1.9e-18 95.9 60 81.7
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 2.5e-18 95.5 54 94.4
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 2.5e-18 95.5 54 90.7
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 2.5e-18 95.5 55 89.1
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 3.3e-18 95.1 55 90.9
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 3.3e-18 95.1 57 84.2
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 5.7e-18 94.4 55 87.3
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 5.7e-18 94.4 55 85.5
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 5.7e-18 94.4 55 90.9
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 7.4e-18 94.0 55 85.5
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 7.4e-18 94.0 55 89.1
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 7.4e-18 94.0 55 89.1
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 7.4e-18 94.0 55 89.1
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 1.3e-17 93.2 55 87.3
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 1.6e-17 92.8 55 87.3
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 1.6e-17 92.8 55 89.1
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 2.2e-17 92.4 61 78.7
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 2.8e-17 92.0 55 85.5
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 2.8e-17 92.0 55 89.1
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 2.8e-17 92.0 55 83.6
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 3.7e-17 91.7 64 75.0
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 4.8e-17 91.3 56 83.9
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 4.8e-17 91.3 55 85.5
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 4.8e-17 91.3 61 80.3
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 4.8e-17 91.3 55 85.5
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 6.3e-17 90.9 55 83.6
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 6.3e-17 90.9 55 85.5
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 8.2e-17 90.5 55 81.8
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 8.2e-17 90.5 56 78.6
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 1.1e-16 90.1 55 83.6
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 1.1e-16 90.1 57 82.5
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 1.1e-16 90.1 55 80.0
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 1.4e-16 89.7 55 83.6
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 1.4e-16 89.7 55 83.6
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 1.4e-16 89.7 55 83.6
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 1.4e-16 89.7 55 83.6
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 1.4e-16 89.7 55 83.6
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 1.4e-16 89.7 55 83.6
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 1.4e-16 89.7 55 83.6
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 1.4e-16 89.7 55 81.8
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 1.4e-16 89.7 55 81.8
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 1.4e-16 89.7 55 83.6
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 1.4e-16 89.7 55 87.3
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 1.4e-16 89.7 55 87.3
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 1.8e-16 89.4 55 81.8
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 1.8e-16 89.4 55 80.0
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 1.8e-16 89.4 55 81.8
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 3.1e-16 88.6 55 80.0
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 4.1e-16 88.2 60 71.7
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 4.1e-16 88.2 55 78.2
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 5.3e-16 87.8 55 80.0
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 6.9e-16 87.4 61 68.9
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 9.0e-16 87.0 57 77.2
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 1.2e-15 86.7 55 80.0
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 1.5e-15 86.3 55 81.8
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 2.0e-15 85.9 47 95.7
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 2.6e-15 85.5 55 78.2
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 4.5e-15 84.7 55 76.4
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 1.0e-14 83.6 55 74.5
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 1.3e-14 83.2 55 76.4
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 1.3e-14 83.2 55 72.7
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 3.8e-14 81.6 55 78.2
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 5.0e-14 81.3 55 78.2
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 5.0e-14 81.3 55 78.2
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 1.1e-13 80.1 73 60.3
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 1.9e-13 79.3 55 76.4
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 2.5e-13 79.0 58 69.0
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 4.2e-13 78.2 48 85.4
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 7.2e-13 77.4 54 68.5
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 1.2e-12 76.6 48 81.2
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 1.2e-12 76.6 55 72.7
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 1.2e-12 76.6 48 81.2
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 2.1e-12 75.9 55 72.7
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 1.0e-11 73.6 47 80.9
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 9.7e-10 67.0 103 44.7
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.5e-07 59.7 29 100.0
TAR375G0162 Trochodendron aralioides HOM05D007265 ORTHO05D009118 5.9e-07 57.8 45 77.8
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 7.7e-07 57.4 29 93.1
FAN10G0450 Fragaria x ananassa HOM05D007283 ORTHO05D013080 1.0e-06 57.0 29 93.1
Dinv17635 Davidia involucrata HOM05D000187 ORTHO05D000926 8.5e-06 53.9 28 92.9


User provided reference genes

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