Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 2.4e-96 355.5 185 100.0
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 9.9e-82 307.0 193 83.9
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 6.9e-51 204.5 198 60.6
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 1.3e-49 200.3 205 59.5
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 2.2e-49 199.5 196 61.2
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 5.0e-49 198.4 203 59.1
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.5e-48 196.1 201 58.7
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 7.2e-48 194.5 196 59.7
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 6.1e-47 191.4 208 56.2
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 7.9e-47 191.0 204 58.3
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.3e-46 190.3 208 56.2
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 7.4e-45 184.5 208 54.3
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.3e-44 183.7 186 59.1
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.6e-44 183.3 181 58.0
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.8e-44 182.6 161 61.5
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 8.2e-44 181.0 202 56.4
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 2.4e-43 179.5 203 56.7
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.4e-43 179.5 195 56.4
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 2.4e-43 179.5 197 53.8
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 5.3e-43 178.3 192 54.2
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 5.3e-43 178.3 169 58.6
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.2e-42 177.2 171 59.1
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.2e-42 177.2 197 53.8
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.5e-42 176.8 212 54.2
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 1.5e-42 176.8 208 52.4
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.0e-42 176.4 205 53.2
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 2.6e-42 176.0 197 51.8
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 4.5e-42 175.3 205 53.2
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 2.2e-41 172.9 167 58.1
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.9e-41 172.6 170 57.1
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 2.9e-41 172.6 198 53.0
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 5.0e-41 171.8 194 54.1
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 5.0e-41 171.8 205 53.2
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 5.0e-41 171.8 199 51.3
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.6e-39 166.8 190 55.8
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.1e-39 166.4 191 53.9
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.1e-39 166.4 212 51.9
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.7e-39 166.0 174 57.5
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.7e-39 166.0 184 57.1
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.7e-39 166.0 184 57.1
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.0e-38 164.1 209 49.3
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.4e-38 163.7 198 50.5
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.8e-38 163.3 193 51.8
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-38 163.3 198 50.5
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 2.3e-38 162.9 197 51.8
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.0e-38 162.5 195 51.8
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.0e-38 162.5 198 50.5
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 5.1e-38 161.8 195 51.8
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 6.7e-38 161.4 176 57.4
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.7e-38 161.4 143 60.8
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.1e-37 160.6 195 51.8
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 2.0e-37 159.8 204 49.5
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 2.0e-37 159.8 167 55.7
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 3.3e-37 159.1 184 57.1
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.3e-37 159.1 195 51.3
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.4e-37 157.9 198 53.5
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 7.4e-37 157.9 198 53.5
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 9.7e-37 157.5 197 53.3
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 2.8e-36 156.0 196 47.4
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 6.3e-36 154.8 174 53.4
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.4e-35 153.7 174 53.4
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.1e-35 152.5 217 51.6
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.1e-35 152.5 217 51.6
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 5.3e-35 151.8 199 49.2
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.5e-34 150.2 217 50.7
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.5e-34 150.2 217 50.7
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.5e-34 150.2 217 50.7
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.0e-34 149.8 217 50.7
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.0e-34 149.8 200 47.0
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 2.0e-34 149.8 191 50.3
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 5.9e-34 148.3 197 50.3
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 7.7e-34 147.9 208 48.1
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 7.7e-34 147.9 175 52.6
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.3e-33 147.1 205 48.8
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 2.2e-33 146.4 204 47.5
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.9e-33 146.0 201 45.3
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 8.5e-33 144.4 225 43.1
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 8.5e-33 144.4 196 49.5
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.4e-32 143.7 189 49.2
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 7.2e-32 141.4 168 51.2
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 9.4e-32 141.0 198 49.0
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-31 140.6 177 52.0
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-31 140.6 181 50.3
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 1.2e-31 140.6 181 50.3
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.2e-31 140.6 192 46.9
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 1.6e-31 140.2 168 51.2
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.6e-31 140.2 176 51.7
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.6e-31 140.2 189 48.7
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 3.6e-31 139.0 198 46.5
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.6e-31 139.0 204 45.1
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 6.1e-31 138.3 215 46.5
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 6.1e-31 138.3 179 49.7
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 6.1e-31 138.3 111 65.8
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 7.9e-31 137.9 216 44.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.0e-30 137.5 169 50.9
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.8e-30 136.7 188 47.3
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.8e-30 136.7 191 45.0
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 3.0e-30 136.0 189 46.0
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.9e-30 135.6 172 50.0
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 8.8e-30 134.4 171 50.3
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.1e-29 134.0 169 49.1
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.5e-29 133.7 196 44.9
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 2.0e-29 133.3 181 47.0
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 3.3e-29 132.5 201 41.3
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 4.4e-29 132.1 171 48.5
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 5.7e-29 131.7 205 44.4
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 7.4e-29 131.3 168 47.0
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 9.7e-29 131.0 116 59.5
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 9.7e-29 131.0 169 50.3
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.3e-28 130.6 176 46.6
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.7e-28 130.2 157 51.0
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 1.7e-28 130.2 168 49.4
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.7e-28 130.2 190 48.9
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.7e-28 130.2 171 49.1
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 2.2e-28 129.8 203 43.8
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 3.7e-28 129.0 169 47.9
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 4.8e-28 128.6 187 45.5
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 6.3e-28 128.3 157 51.6
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 1.8e-27 126.7 209 44.0
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 2.4e-27 126.3 212 41.0
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 4.1e-27 125.6 146 49.3
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 4.1e-27 125.6 172 47.1
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.6e-26 123.6 145 49.7
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.6e-26 123.6 205 43.9
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.6e-26 122.9 208 41.8
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 2.6e-26 122.9 215 41.4
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.5e-26 122.5 197 41.6
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 5.9e-26 121.7 213 40.8
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 5.9e-26 121.7 153 47.1
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 5.9e-26 121.7 208 43.8
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 5.9e-26 121.7 192 43.8
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 7.7e-26 121.3 236 40.3
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 7.7e-26 121.3 195 45.1
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.3e-25 120.6 188 43.6
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.3e-25 120.6 220 40.0
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.2e-25 119.8 206 41.7
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.9e-25 119.4 180 44.4
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 3.8e-25 119.0 166 47.0
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 6.5e-25 118.2 208 41.3
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 1.9e-24 116.7 192 41.1
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.9e-24 116.7 197 44.7
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 3.2e-24 115.9 211 41.2
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 3.2e-24 115.9 153 47.1
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 5.5e-24 115.2 211 40.8
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 5.5e-24 115.2 107 57.0
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 7.2e-24 114.8 192 41.1
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 9.4e-24 114.4 199 41.2
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-23 114.0 205 41.0
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.2e-23 114.0 186 44.1
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 2.1e-23 113.2 191 43.5
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.3e-22 109.8 181 41.4
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.2e-21 107.5 172 43.6
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 2.6e-21 106.3 220 36.4
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 2.6e-21 106.3 220 36.4
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 3.3e-21 105.9 221 36.2
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 5.7e-21 105.1 175 44.6
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.7e-20 103.6 157 43.9
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 1.7e-20 103.6 202 39.1
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.1e-19 100.9 120 52.5
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.4e-19 100.5 185 42.2
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 7.0e-19 98.2 178 42.7
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.0e-17 94.4 102 54.9
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.7e-17 93.6 136 47.1
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.7e-17 93.6 146 45.2
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 2.9e-17 92.8 180 41.1
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-16 90.5 177 38.4
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 1.5e-16 90.5 135 45.9
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 2.5e-16 89.7 180 40.6
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 2.5e-16 89.7 177 38.4
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 3.2e-16 89.4 177 37.9
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 3.2e-16 89.4 182 40.1
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.2e-16 89.0 183 38.8
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 7.2e-16 88.2 174 40.8
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.7e-15 86.3 179 39.1
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.0e-14 84.3 278 30.2
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 8.8e-14 81.3 80 52.5
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.0e-13 80.1 120 41.7
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 9.8e-13 77.8 163 35.0
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.5e-10 69.3 163 33.1
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 4.5e-10 68.9 70 54.3
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.3e-09 67.4 146 35.6
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 3.2e-08 62.8 149 34.2
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.2e-08 62.8 120 39.2
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 1.2e-07 60.8 210 32.4
SEGI_01918 Sequoiadendron giganteum HOM05D003703 ORTHO05D004278 3.0e-06 56.2 48 56.2
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 5.2e-06 55.5 116 33.6


User provided reference genes

Program Settings