Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 6.1e-197 690.6 353 100.0
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 2.5e-158 562.4 352 78.4
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 1.0e-151 540.4 372 75.3
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.8e-148 529.6 357 74.5
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 8.9e-148 527.3 358 74.0
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 4.9e-146 521.5 357 74.2
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 1.9e-145 519.6 357 74.2
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 9.2e-145 517.3 359 72.1
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 2.0e-144 516.2 357 73.4
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 4.6e-144 515.0 359 74.7
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 1.5e-142 510.0 403 65.5
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 4.3e-142 508.4 357 72.3
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 4.3e-142 508.4 404 64.9
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 7.3e-142 507.7 404 64.6
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 6.8e-140 501.1 368 69.8
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 1.5e-139 500.0 357 70.6
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 2.6e-139 499.2 360 70.8
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 4.4e-139 498.4 357 70.9
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 7.5e-139 497.7 357 70.3
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 9.8e-139 497.3 356 69.7
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 9.8e-139 497.3 399 63.9
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 1.7e-138 496.5 357 70.6
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 2.2e-138 496.1 354 69.5
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 2.2e-138 496.1 355 69.0
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 3.7e-138 495.4 341 73.9
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 1.1e-137 493.8 385 65.7
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 1.4e-137 493.4 358 70.7
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 1.6e-136 490.0 411 63.3
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 6.0e-136 488.0 360 68.6
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 2.3e-135 486.1 360 68.1
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 1.6e-133 479.9 354 68.1
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 2.8e-133 479.2 349 69.9
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 6.2e-133 478.0 342 70.8
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 6.2e-133 478.0 354 68.4
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 8.1e-133 477.6 354 68.4
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 1.8e-132 476.5 378 65.6
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 2.3e-132 476.1 354 68.1
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 5.2e-132 474.9 368 65.5
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 5.2e-132 474.9 354 68.1
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 6.8e-132 474.6 406 60.8
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 8.9e-132 474.2 354 67.8
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 4.4e-131 471.9 359 66.6
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 4.4e-131 471.9 357 65.0
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 5.8e-131 471.5 354 66.9
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 9.9e-131 470.7 351 66.7
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 2.9e-130 469.2 356 66.6
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 2.9e-130 469.2 394 63.5
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 8.4e-130 467.6 352 68.5
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 1.1e-129 467.2 412 60.4
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 1.1e-129 467.2 353 67.4
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 9.2e-129 464.2 356 65.7
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.6e-128 463.4 355 67.0
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 1.0e-127 460.7 400 60.5
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 1.0e-127 460.7 357 67.2
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 3.0e-127 459.1 367 64.3
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 3.9e-127 458.8 417 59.2
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 5.1e-127 458.4 445 57.5
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 8.6e-127 457.6 351 65.0
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 3.3e-126 455.7 454 55.1
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 4.3e-126 455.3 396 60.4
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 4.3e-126 455.3 318 70.1
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 5.6e-126 454.9 383 61.1
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 1.6e-125 453.4 402 60.4
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 1.1e-124 450.7 403 59.8
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 1.1e-124 450.7 397 58.4
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 3.1e-124 449.1 344 65.1
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 3.1e-124 449.1 339 64.9
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 4.0e-124 448.7 402 59.5
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 5.2e-124 448.4 399 58.9
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.2e-123 447.2 397 58.2
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 1.2e-123 447.2 407 57.2
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.5e-123 446.8 380 60.3
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 2.0e-123 446.4 375 62.9
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 2.6e-123 446.0 341 65.7
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 3.4e-123 445.7 395 59.7
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 2.2e-122 443.0 350 64.0
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 4.9e-122 441.8 406 57.6
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 4.9e-122 441.8 402 58.5
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 4.9e-122 441.8 406 57.9
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 8.4e-122 441.0 375 61.1
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 8.4e-122 441.0 400 59.8
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.1e-121 440.7 343 65.9
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 4.2e-121 438.7 372 61.3
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 2.1e-120 436.4 391 58.8
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 2.1e-120 436.4 391 58.8
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 2.1e-120 436.4 406 56.7
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 4.3e-118 428.7 309 70.6
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.1e-117 426.4 342 63.5
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 5.3e-116 421.8 351 59.5
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 2.0e-115 419.9 350 62.3
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 8.4e-114 414.5 339 61.1
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 7.9e-112 407.9 367 57.8
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 1.1e-110 404.1 361 59.0
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 3.3e-110 402.5 358 58.7
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 5.6e-110 401.7 396 55.1
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 9.6e-110 401.0 363 55.9
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 1.3e-109 400.6 353 59.5
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 3.4e-107 392.5 359 57.7
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.2e-106 389.8 337 60.2
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 8.4e-106 387.9 337 59.9
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.1e-105 387.5 337 59.6
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.1e-105 387.5 337 59.9
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 1.4e-105 387.1 362 57.5
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 7.1e-105 384.8 337 59.6
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 1.2e-104 384.0 290 65.9
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 1.2e-104 384.0 290 65.9
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 7.9e-96 354.8 353 53.5
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 7.9e-96 354.8 315 55.2
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 3.8e-90 335.9 356 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 2.5e-89 333.2 407 46.9
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 7.2e-89 331.6 270 63.0
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.6e-88 330.5 213 77.5
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 3.4e-83 312.8 313 50.8
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.1e-76 291.2 356 49.4
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 3.4e-75 286.2 236 63.1
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 8.8e-71 271.6 215 66.0
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.8e-68 263.8 216 59.7
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 2.2e-58 230.3 255 49.4
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 6.3e-53 212.2 395 35.7
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 1.3e-50 204.5 152 67.8
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.6e-48 197.6 150 63.3
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 6.8e-47 192.2 143 67.8
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.9e-45 186.0 128 70.3
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 1.0e-42 178.3 124 72.6
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 3.8e-42 176.4 162 56.2
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.2e-38 164.9 115 71.3
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.6e-27 127.9 79 78.5
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 8.3e-21 105.5 73 69.9
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 4.3e-17 93.2 143 39.2
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 2.2e-13 80.9 423 23.4
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 7.1e-12 75.9 65 60.0
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 1.6e-08 64.7 54 63.0
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 7.6e-06 55.8 50 56.0
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 9.9e-06 55.5 66 47.0


User provided reference genes

Program Settings