Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 8.8e-34 146.4 73 100.0
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 3.8e-29 131.0 69 92.8
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 6.5e-29 130.2 69 91.3
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.9e-28 128.6 69 91.3
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 2.5e-28 128.3 69 89.9
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 4.2e-28 127.5 69 91.3
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 4.2e-28 127.5 69 89.9
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.6e-27 125.6 69 87.0
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 1.8e-26 122.1 69 84.1
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 5.2e-26 120.6 69 84.1
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 5.2e-26 120.6 69 84.1
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 6.8e-26 120.2 68 83.8
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 6.8e-26 120.2 69 84.1
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 8.8e-26 119.8 69 82.6
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 1.2e-25 119.4 69 82.6
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 1.2e-25 119.4 69 82.6
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 2.0e-25 118.6 68 83.8
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.7e-24 115.5 68 82.4
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 2.8e-24 114.8 69 79.7
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.4e-23 112.5 68 80.9
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.8e-23 112.1 68 82.4
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.8e-23 112.1 68 82.4
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 2.4e-23 111.7 68 80.9
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 3.1e-23 111.3 68 79.4
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 4.1e-23 110.9 68 80.9
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 4.1e-23 110.9 68 80.9
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 4.1e-23 110.9 68 80.9
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 5.4e-23 110.5 68 80.9
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 5.4e-23 110.5 68 80.9
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 7.0e-23 110.2 68 80.9
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 7.0e-23 110.2 68 79.4
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 9.1e-23 109.8 68 77.9
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 9.1e-23 109.8 68 79.4
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 9.1e-23 109.8 68 80.9
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 9.1e-23 109.8 68 79.4
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 1.2e-22 109.4 68 79.4
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.6e-22 109.0 68 79.4
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.6e-22 109.0 68 80.9
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.6e-22 109.0 68 79.4
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 2.0e-22 108.6 68 79.4
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 2.7e-22 108.2 68 79.4
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 3.5e-22 107.8 68 76.5
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 4.5e-22 107.5 68 77.9
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 4.5e-22 107.5 68 77.9
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 4.5e-22 107.5 68 77.9
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 4.5e-22 107.5 68 77.9
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 7.7e-22 106.7 68 76.5
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 7.7e-22 106.7 68 76.5
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.0e-21 106.3 68 76.5
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 1.0e-21 106.3 67 79.1
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.0e-21 106.3 68 76.5
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.0e-21 106.3 68 76.5
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.0e-21 106.3 68 76.5
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.7e-21 105.5 68 77.9
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 1.7e-21 105.5 68 75.0
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.7e-21 105.5 67 77.6
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.3e-21 105.1 68 77.9
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.3e-21 105.1 68 77.9
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.3e-21 105.1 68 77.9
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 2.3e-21 105.1 68 77.9
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 2.3e-21 105.1 68 77.9
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 2.9e-21 104.8 68 75.0
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 3.8e-21 104.4 68 75.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.8e-21 104.4 68 75.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.8e-21 104.4 68 75.0
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.8e-21 104.4 68 75.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.8e-21 104.4 68 75.0
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 6.6e-21 103.6 68 76.5
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 6.6e-21 103.6 68 76.5
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 6.6e-21 103.6 63 79.4
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 6.6e-21 103.6 68 76.5
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 8.6e-21 103.2 68 72.1
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.1e-20 102.8 68 72.1
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 1.1e-20 102.8 67 74.6
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 1.5e-20 102.4 56 87.5
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.5e-20 102.4 68 73.5
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.9e-20 102.1 65 76.9
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.9e-20 102.1 65 76.9
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 2.5e-20 101.7 65 75.4
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 3.3e-20 101.3 62 82.3
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 3.3e-20 101.3 68 75.0
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 3.3e-20 101.3 68 72.1
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 3.3e-20 101.3 68 73.5
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 4.2e-20 100.9 68 70.6
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.2e-20 100.9 68 72.1
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 5.5e-20 100.5 68 76.5
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 7.2e-20 100.1 68 73.5
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 7.2e-20 100.1 68 73.5
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 9.5e-20 99.8 68 75.0
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 9.5e-20 99.8 68 70.6
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 9.5e-20 99.8 68 70.6
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 9.5e-20 99.8 68 70.6
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 9.5e-20 99.8 68 70.6
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.2e-19 99.4 68 70.6
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.2e-19 99.4 68 70.6
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.2e-19 99.4 67 71.6
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.2e-19 99.4 67 71.6
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 1.2e-19 99.4 67 71.6
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.2e-19 99.4 68 70.6
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.1e-19 98.6 65 75.4
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 2.8e-19 98.2 65 73.8
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 3.6e-19 97.8 67 70.1
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 3.6e-19 97.8 67 70.1
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 3.6e-19 97.8 67 70.1
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 3.6e-19 97.8 67 70.1
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 3.6e-19 97.8 65 73.8
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 4.7e-19 97.4 65 73.8
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 4.7e-19 97.4 67 70.1
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 8.0e-19 96.7 65 72.3
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 8.0e-19 96.7 68 67.6
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 2.3e-18 95.1 74 68.9
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 4.0e-18 94.4 67 68.7
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 4.0e-18 94.4 64 70.3
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 4.0e-18 94.4 67 67.2
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 5.2e-18 94.0 67 71.6
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 6.8e-18 93.6 65 69.2
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 3.4e-17 91.3 68 64.7
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 1.7e-16 89.0 68 67.6
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 2.2e-16 88.6 69 65.2
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 2.8e-16 88.2 68 66.2
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 3.7e-16 87.8 67 65.7
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 8.3e-16 86.7 68 60.3
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 3.2e-15 84.7 53 79.2
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 9.2e-15 83.2 72 62.5
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 2.7e-14 81.6 50 78.0
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.7e-14 81.6 53 73.6
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 7.8e-14 80.1 75 58.7
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.3e-13 79.3 68 58.8
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 2.3e-13 78.6 52 75.0
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 3.9e-13 77.8 83 55.4
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 5.0e-13 77.4 53 66.0
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 5.0e-13 77.4 54 70.4
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.3e-12 74.3 67 59.7
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.3e-12 74.3 57 63.2
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 6.1e-11 70.5 68 55.9
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 8.0e-11 70.1 51 62.7
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 2.3e-10 68.6 67 55.2
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 2.3e-10 68.6 71 52.1
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.5e-09 65.9 46 71.7
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.0e-09 65.5 83 50.6
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 3.4e-09 64.7 59 55.9
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.1e-07 59.7 72 50.0
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 1.9e-07 58.9 68 50.0
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 3.2e-07 58.2 36 80.6
SGA_v2.0_scaffold13G06711 Striga asiatica HOM05D001997 ORTHO05D005560 5.4e-07 57.4 31 83.9


User provided reference genes

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