Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 9.9e-239 829.7 416 100.0
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 4.1e-200 701.4 416 83.7
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 1.2e-199 699.9 414 84.8
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 1.5e-199 699.5 414 84.5
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 2.1e-196 689.1 416 84.4
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 3.5e-196 688.3 413 81.6
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 6.1e-196 687.6 414 82.4
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 3.9e-195 684.9 414 81.6
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 6.7e-195 684.1 413 82.1
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 2.5e-194 682.2 414 81.9
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 3.3e-194 681.8 416 81.5
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 1.6e-193 679.5 416 81.7
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 1.4e-192 676.4 419 83.1
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.5e-191 672.9 416 80.8
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 3.4e-191 671.8 414 79.7
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 8.5e-190 667.2 417 80.8
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 1.4e-189 666.4 423 78.3
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 1.9e-189 666.0 413 79.7
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 1.9e-189 666.0 411 80.8
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 3.2e-189 665.2 417 80.3
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 7.2e-189 664.1 410 81.5
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 9.4e-189 663.7 443 76.7
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 1.2e-188 663.3 413 80.9
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 1.2e-188 663.3 417 80.6
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 3.6e-188 661.8 416 81.2
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 3.6e-188 661.8 418 79.9
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 3.6e-188 661.8 411 80.3
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 4.6e-188 661.4 416 80.0
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 6.1e-188 661.0 413 79.2
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 6.1e-188 661.0 417 79.9
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 6.1e-188 661.0 414 80.4
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 2.3e-187 659.1 416 80.0
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 3.0e-187 658.7 418 79.4
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 3.0e-187 658.7 418 79.4
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 3.0e-187 658.7 417 79.4
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 5.1e-187 657.9 416 80.0
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 1.1e-186 656.8 415 79.3
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.1e-186 656.8 418 79.4
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.5e-186 656.4 418 79.2
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 1.8e-184 649.4 411 79.1
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 2.4e-184 649.0 417 77.5
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 6.9e-184 647.5 383 83.8
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 9.1e-184 647.1 413 78.7
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 2.6e-183 645.6 418 77.0
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 1.7e-182 642.9 413 77.0
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 2.9e-182 642.1 421 76.5
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 3.8e-182 641.7 414 77.1
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 1.4e-181 639.8 416 78.8
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 9.4e-181 637.1 356 86.2
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 1.4e-179 633.3 343 88.9
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 6.7e-179 630.9 421 75.8
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 5.7e-178 627.9 356 85.7
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 9.7e-178 627.1 363 83.5
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 3.7e-177 625.2 364 82.4
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 3.1e-176 622.1 364 82.4
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 9.1e-176 620.5 368 81.2
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 1.2e-175 620.2 368 81.8
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 3.5e-175 618.6 365 81.9
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 6.5e-174 614.4 360 82.2
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 1.1e-173 613.6 373 78.0
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 3.2e-173 612.1 348 86.8
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 1.2e-172 610.1 417 75.3
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 2.7e-172 609.0 342 84.2
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 1.4e-171 606.7 411 74.7
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 5.2e-171 604.7 373 79.6
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 1.3e-169 600.1 367 79.6
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 3.7e-169 598.6 375 80.8
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 1.0e-163 580.5 364 77.5
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 5.2e-163 578.2 360 78.1
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 5.2e-163 578.2 360 78.1
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 1.2e-162 577.0 374 77.8
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 1.5e-162 576.6 409 69.7
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 2.0e-162 576.2 346 80.1
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 2.6e-162 575.9 361 77.8
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 5.7e-162 574.7 409 69.7
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 1.3e-161 573.5 420 69.5
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 1.7e-161 573.2 363 76.6
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 3.7e-161 572.0 420 69.8
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 1.4e-160 570.1 409 70.4
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 1.8e-160 569.7 367 78.7
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 1.8e-160 569.7 414 69.3
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 2.4e-160 569.3 352 77.8
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 4.1e-160 568.5 363 75.8
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 1.2e-159 567.0 413 70.5
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 1.6e-159 566.6 415 71.6
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 7.7e-159 564.3 399 70.7
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 1.7e-158 563.1 343 79.3
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 1.5e-157 560.1 320 83.4
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 5.5e-157 558.1 383 72.1
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 1.2e-156 557.0 320 82.8
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 6.1e-156 554.7 386 69.7
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 6.3e-153 544.7 298 87.6
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 9.2e-152 540.8 387 73.9
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 2.0e-151 539.7 346 75.7
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 4.5e-151 538.5 377 70.6
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 5.9e-151 538.1 341 80.1
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 6.6e-150 534.6 417 66.9
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 4.3e-149 531.9 406 64.5
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 5.2e-147 525.0 436 65.4
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 8.3e-145 517.7 345 76.8
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 1.4e-144 516.9 378 68.3
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 3.2e-144 515.8 359 69.9
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 6.2e-140 501.5 270 89.3
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 2.0e-138 496.5 346 68.8
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 1.2e-135 487.3 413 63.0
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 1.3e-129 467.2 359 63.5
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 1.6e-127 460.3 299 78.9
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 6.6e-126 454.9 253 85.0
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 6.8e-123 444.9 340 62.1
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 2.4e-120 436.4 368 58.4
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.8e-107 393.7 212 88.2
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 1.3e-97 360.9 204 85.3
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 3.1e-91 339.7 184 88.0
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 4.2e-88 329.3 195 82.6
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 1.8e-78 297.4 204 68.6
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 3.8e-65 253.1 274 48.2
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 5.9e-50 202.6 394 35.0
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 6.5e-49 199.1 123 85.4
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 8.8e-46 188.7 213 48.8
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 8.3e-44 182.2 245 43.3
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 1.5e-37 161.4 102 74.5
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 5.9e-34 149.4 85 80.0
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 5.7e-29 132.9 74 85.1
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 2.2e-28 131.0 164 45.7
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 1.0e-25 122.1 75 73.3
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 4.4e-21 106.7 127 50.4
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 9.8e-21 105.5 127 49.6
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 4.6e-18 96.7 74 70.3
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 3.1e-14 84.0 44 86.4
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 1.7e-12 78.2 110 48.2
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 1.4e-11 75.1 93 46.2
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 2.4e-11 74.3 100 40.0
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 9.5e-08 62.4 60 53.3
TAR383G0536 Trochodendron aralioides HOM05D005974 ORTHO05D007201 2.8e-07 60.8 48 60.4


User provided reference genes

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