Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu006881.1 Olea europaea HOM05D007791 ORTHO05D000653 1.3e-45 186.0 94 100.0
TAR623G1446 Trochodendron aralioides HOM05D007791 ORTHO05D000653 6.5e-21 104.0 104 53.8
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 1.4e-20 102.8 100 59.0
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 9.3e-20 100.1 104 51.0
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 2.1e-19 99.0 101 52.5
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 6.0e-19 97.4 96 53.1
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 7.9e-19 97.1 104 50.0
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 7.9e-19 97.1 94 55.3
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 7.9e-19 97.1 94 55.3
Cc04_g14510 Coffea canephora HOM05D007791 ORTHO05D000653 1.3e-18 96.3 98 49.0
GSVIVG01034125001 Vitis vinifera HOM05D007791 ORTHO05D000653 2.3e-18 95.5 111 46.8
ECA248G2888 Erigeron canadensis HOM05D007791 ORTHO05D000653 3.0e-18 95.1 95 53.7
Migut.J00302 Erythranthe guttata HOM05D007791 ORTHO05D000653 3.9e-18 94.7 95 55.8
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 3.9e-18 94.7 94 54.3
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 3.9e-18 94.7 99 50.5
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 3.9e-18 94.7 99 50.5
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 3.9e-18 94.7 96 51.0
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 5.1e-18 94.4 96 52.1
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 1.1e-17 93.2 72 62.5
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 1.5e-17 92.8 91 51.6
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 1.5e-17 92.8 96 55.2
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 4.3e-17 91.3 92 48.9
TPR.G35313 Trifolium pratense HOM05D007791 ORTHO05D000653 4.3e-17 91.3 64 65.6
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 5.7e-17 90.9 87 56.3
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 7.4e-17 90.5 87 51.7
Gohir.D04G122900 Gossypium hirsutum HOM05D007791 ORTHO05D000653 7.4e-17 90.5 102 50.0
Lsat_1_v5_gn_5_153840 Lactuca sativa HOM05D007791 ORTHO05D000653 7.4e-17 90.5 64 62.5
Lj3g0002224 Lotus japonicus HOM05D007791 ORTHO05D000653 7.4e-17 90.5 64 65.6
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 7.4e-17 90.5 64 64.1
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 7.4e-17 90.5 67 62.7
Gohir.A04G084100 Gossypium hirsutum HOM05D007791 ORTHO05D000653 9.7e-17 90.1 102 50.0
TWI74G0823 Tripterygium wilfordii HOM05D007791 ORTHO05D000653 9.7e-17 90.1 68 58.8
Gorai.012G105800 Gossypium raimondii HOM05D007791 ORTHO05D000653 1.3e-16 89.7 102 49.0
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 1.6e-16 89.4 96 50.0
Medtr3g020970 Medicago truncatula HOM05D007791 ORTHO05D000653 2.2e-16 89.0 88 53.4
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 3.7e-16 88.2 87 51.7
Cpa.g.sc228.1 Carica papaya HOM05D007791 ORTHO05D000653 4.8e-16 87.8 104 46.2
Glyma.11G151000 Glycine max HOM05D007791 ORTHO05D000653 4.8e-16 87.8 88 53.4
Manes.09G094800 Manihot esculenta HOM05D007791 ORTHO05D000653 4.8e-16 87.8 94 53.2
CSS0008915 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 6.3e-16 87.4 66 65.2
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 1.8e-15 85.9 95 49.5
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 2.4e-15 85.5 65 61.5
TPR.G3882 Trifolium pratense HOM05D007791 ORTHO05D000653 4.1e-15 84.7 98 48.0
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 5.3e-15 84.3 88 52.3
PSO063G1561 Papaver somniferum HOM05D007791 ORTHO05D000653 6.9e-15 84.0 80 52.5
Rhsim05G0195200 Rhododendron simsii HOM05D007791 ORTHO05D000653 6.9e-15 84.0 102 50.0
Medtr3g020930 Medicago truncatula HOM05D007791 ORTHO05D000653 9.0e-15 83.6 64 60.9
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 9.0e-15 83.6 64 60.9
Rhsim05G0195400 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.5e-14 82.8 102 49.0
HanXRQChr05g0136961 Helianthus annuus HOM05D007791 ORTHO05D000653 2.6e-14 82.0 64 57.8
ATR0559G001 Amborella trichopoda HOM05D007791 ORTHO05D000653 7.7e-14 80.5 107 43.9
PGR031G1849 Punica granatum HOM05D007791 ORTHO05D000653 1.0e-13 80.1 69 55.1
Rhsim05G0195100 Rhododendron simsii HOM05D007791 ORTHO05D000653 3.8e-13 78.2 101 47.5
Thecc.05G034800 Theobroma cacao HOM05D007791 ORTHO05D000653 3.8e-13 78.2 87 47.1
Duzib106G1185 Durio zibethinus HOM05D007791 ORTHO05D000653 3.2e-12 75.1 91 45.1
Eucgr.A01291 Eucalyptus grandis HOM05D007791 ORTHO05D000653 3.2e-12 75.1 68 51.5
SEGI_12735 Sequoiadendron giganteum HOM05D007791 ORTHO05D000653 7.2e-12 73.9 62 54.8
arahy.Tifrunner.gnm1.ann1.0A2T8K Arachis hypogaea HOM05D007791 ORTHO05D000653 9.4e-12 73.6 94 42.6
Nitab4.5_0007505g0030 Nicotiana tabacum HOM05D007791 ORTHO05D000653 9.4e-12 73.6 62 58.1
CsaV3_4G025200 Cucumis sativus L. HOM05D007791 ORTHO05D000653 1.6e-11 72.8 61 59.0
Medtr3g020800 Medicago truncatula HOM05D007791 ORTHO05D000653 1.0e-10 70.1 64 53.1
Medtr3g020880 Medicago truncatula HOM05D007791 ORTHO05D000653 3.0e-10 68.6 64 54.7
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 3.0e-10 68.6 64 51.6
arahy.Tifrunner.gnm1.ann1.NKRP5F Arachis hypogaea HOM05D007791 ORTHO05D000653 5.1e-10 67.8 102 44.1
Aqoxy1G00874 Aquilegia oxysepala HOM05D007791 ORTHO05D000653 6.7e-10 67.4 95 42.1
RcHm_v2.0_Chr4g0390821 Rosa chinensis HOM05D001004 ORTHO05D000653 6.7e-10 67.4 65 52.3
Medtr1g070335 Medicago truncatula HOM05D001004 ORTHO05D000653 1.5e-09 66.2 69 44.9
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 3.3e-09 65.1 69 53.6
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 5.7e-09 64.3 69 50.7
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 5.7e-09 64.3 68 48.5
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 5.7e-09 64.3 65 47.7
Lj5g0018869 Lotus japonicus HOM05D001004 ORTHO05D000653 7.4e-09 63.9 65 52.3
Lj5g0010722 Lotus japonicus HOM05D001004 ORTHO05D000653 9.7e-09 63.5 68 44.1
SEGI_18954 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 9.7e-09 63.5 66 48.5
CBR_g37573 Chara braunii HOM05D007791 ORTHO05D000653 1.3e-08 63.2 64 51.6
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 1.7e-08 62.8 64 48.4
Prupe.1G032900 Prunus persica HOM05D001004 ORTHO05D000653 2.2e-08 62.4 69 42.0
Prupe.8G229400 Prunus persica HOM05D001004 ORTHO05D000653 2.2e-08 62.4 68 41.2
Gorai.007G143400 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.8e-08 62.0 66 47.0
RcHm_v2.0_Chr4g0390831 Rosa chinensis HOM05D001004 ORTHO05D000653 2.8e-08 62.0 65 47.7
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 4.8e-08 61.2 65 46.2
Hma1.2p1_0310F.1_g120950 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 1.1e-07 60.1 65 46.2
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 1.4e-07 59.7 68 44.1
ClCG09G008110 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.4e-07 59.7 65 44.6
RhsimUnG0178500 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.4e-07 59.7 94 42.6
HPP92_019238 Vanilla planifolia HOM05D007791 ORTHO05D000653 1.4e-07 59.7 62 45.2
Glyma.13G120600 Glycine max HOM05D001004 ORTHO05D000653 2.4e-07 58.9 65 46.2
CDE02G1758 Ceratophyllum demersum HOM05D001004 ORTHO05D000653 3.1e-07 58.5 65 46.2
Haze_24569 Corylus avellana HOM05D001004 ORTHO05D000653 3.1e-07 58.5 67 46.3
HPP92_019239 Vanilla planifolia HOM05D007791 ORTHO05D000653 3.1e-07 58.5 65 44.6
Zm00001eb355990 Zea mays HOM05D007791 ORTHO05D000653 3.1e-07 58.5 69 46.4
Ciclev10007070m.g Citrus clementina HOM05D001004 ORTHO05D000653 4.1e-07 58.2 65 43.1
MD13G1208300 Malus domestica HOM05D001004 ORTHO05D000653 4.1e-07 58.2 65 47.7
Manes.05G086480 Manihot esculenta HOM05D001004 ORTHO05D000653 4.1e-07 58.2 66 40.9
Psat2g130960 Pisum sativum HOM05D001004 ORTHO05D000653 4.1e-07 58.2 65 43.1
FvH4_4g02840 Fragaria vesca HOM05D001004 ORTHO05D000653 5.3e-07 57.8 63 44.4
FvH4_4g02940 Fragaria vesca HOM05D001004 ORTHO05D000653 5.3e-07 57.8 64 45.3
FAN12G0040 Fragaria x ananassa HOM05D001004 ORTHO05D000653 5.3e-07 57.8 63 44.4
FAN17G1223 Fragaria x ananassa HOM05D001004 ORTHO05D000653 5.3e-07 57.8 64 45.3
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 5.3e-07 57.8 65 44.6
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 5.3e-07 57.8 65 46.2
Phvul.009G203600 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 5.3e-07 57.8 68 41.2
SalBow6G5036 Salvia bowleyana HOM05D001004 ORTHO05D000653 5.3e-07 57.8 65 46.2
CANSAT78G0302 Cannabis sativa HOM05D001004 ORTHO05D000653 6.9e-07 57.4 65 43.1
Dinv44643 Davidia involucrata HOM05D001004 ORTHO05D000653 6.9e-07 57.4 65 43.1
Gohir.D11G134150 Gossypium hirsutum HOM05D001004 ORTHO05D000653 6.9e-07 57.4 66 47.0
TPR.G9059 Trifolium pratense HOM05D001004 ORTHO05D000653 6.9e-07 57.4 65 43.1
TWI09G1179 Tripterygium wilfordii HOM05D001004 ORTHO05D000653 6.9e-07 57.4 76 40.8
Zm00001eb267000 Zea mays HOM05D007791 ORTHO05D000653 6.9e-07 57.4 74 41.9
ClCG07G000770 Citrullus lanatus HOM05D001004 ORTHO05D000653 9.1e-07 57.0 67 47.8
TAR633G2777 Trochodendron aralioides HOM05D001004 ORTHO05D000653 9.1e-07 57.0 65 43.1
ClCG07G000780 Citrullus lanatus HOM05D007791 ORTHO05D044567 1.2e-06 56.6 67 49.3
Lj5g0009601 Lotus japonicus HOM05D001004 ORTHO05D000653 1.2e-06 56.6 65 41.5
Manes.05G086329 Manihot esculenta HOM05D001004 ORTHO05D000653 1.2e-06 56.6 66 39.4
Medtr5g045470 Medicago truncatula HOM05D001004 ORTHO05D000653 1.2e-06 56.6 65 41.5
Peaxi162Scf00325g00711 Petunia axillaris HOM05D001004 ORTHO05D000653 1.2e-06 56.6 65 44.6
Thecc.10G077500 Theobroma cacao HOM05D001004 ORTHO05D000653 1.2e-06 56.6 65 44.6
Thecc.10G077700 Theobroma cacao HOM05D001004 ORTHO05D000653 1.2e-06 56.6 65 44.6
Thecc.10G077900 Theobroma cacao HOM05D001004 ORTHO05D000653 1.2e-06 56.6 65 44.6
COL.COLO4_05577 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.5e-06 56.2 65 46.2
Os01g0615050 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.5e-06 56.2 66 45.5
Os12g0437800 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.5e-06 56.2 67 44.8
RcHm_v2.0_Chr4g0390841 Rosa chinensis HOM05D001004 ORTHO05D000653 1.5e-06 56.2 65 41.5
GSVIVG01018141001 Vitis vinifera HOM05D001004 ORTHO05D000653 1.5e-06 56.2 65 43.1
Zm00001eb267030 Zea mays HOM05D007791 ORTHO05D000653 1.5e-06 56.2 69 47.8
Medtr1g075380 Medicago truncatula HOM05D001004 ORTHO05D000653 2.0e-06 55.8 65 46.2
Thecc.10G077800 Theobroma cacao HOM05D001004 ORTHO05D000653 2.0e-06 55.8 65 44.6
Thecc.10G078100 Theobroma cacao HOM05D001004 ORTHO05D000653 2.0e-06 55.8 65 44.6
Thecc.10G078300 Theobroma cacao HOM05D001004 ORTHO05D000653 2.0e-06 55.8 65 43.1
Ciclev10007123m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.6e-06 55.5 65 43.1
FAN12G2763 Fragaria x ananassa HOM05D001004 ORTHO05D000653 2.6e-06 55.5 63 42.9
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 2.6e-06 55.5 64 43.8
Gorai.007G143700 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.6e-06 55.5 66 40.9
Hma1.2p1_0310F.1_g120880 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 2.6e-06 55.5 69 44.9
RcHm_v2.0_Chr4g0391001 Rosa chinensis HOM05D001004 ORTHO05D000653 2.6e-06 55.5 62 43.5
Sed0001135 Sechium edule HOM05D001004 ORTHO05D000653 2.6e-06 55.5 65 46.2
Thecc.01G264300 Theobroma cacao HOM05D001004 ORTHO05D000653 2.6e-06 55.5 66 43.9
COL.COLO4_05576 Corchorus olitorius HOM05D001004 ORTHO05D000653 3.4e-06 55.1 65 44.6
Potri.011G110100 Populus trichocarpa HOM05D001004 ORTHO05D000653 3.4e-06 55.1 65 44.6
Potri.011G110400 Populus trichocarpa HOM05D001004 ORTHO05D000653 3.4e-06 55.1 65 44.6
Prupe.I000200 Prunus persica HOM05D001004 ORTHO05D000653 3.4e-06 55.1 65 43.1
TPR.G18577 Trifolium pratense HOM05D001004 ORTHO05D000653 3.4e-06 55.1 65 44.6
vmacro08656 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 3.4e-06 55.1 72 40.3
Atru.chr2.229 Acer truncatum HOM05D001004 ORTHO05D000653 4.5e-06 54.7 70 40.0
Cfa006068 Carpinus fangiana HOM05D001004 ORTHO05D000653 4.5e-06 54.7 72 43.1
Prupe.8G228900 Prunus persica HOM05D001004 ORTHO05D000653 4.5e-06 54.7 68 35.3
TPR.G24475 Trifolium pratense HOM05D003787 ORTHO05D000653 4.5e-06 54.7 64 40.6
Zm00001eb267010 Zea mays HOM05D007791 ORTHO05D000653 4.5e-06 54.7 64 45.3
CiPaw.04G183700 Carya illinoinensis HOM05D001004 ORTHO05D000653 5.9e-06 54.3 65 41.5
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 5.9e-06 54.3 65 41.5
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 5.9e-06 54.3 65 41.5
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 5.9e-06 54.3 65 40.0
MBI04_g22609_MAGBIO Magnolia biondii HOM05D001004 ORTHO05D000653 5.9e-06 54.3 68 38.2
Nn3g18475 Nelumbo nucifera HOM05D001004 ORTHO05D000653 5.9e-06 54.3 65 41.5
Oeu002604.1 Olea europaea HOM05D001004 ORTHO05D000653 5.9e-06 54.3 65 41.5
COL.COLO4_12159 Corchorus olitorius HOM05D001004 ORTHO05D000653 7.7e-06 53.9 65 41.5
HanXRQChr01g0014511 Helianthus annuus HOM05D001004 ORTHO05D000653 7.7e-06 53.9 65 43.1
PSO384G5145 Papaver somniferum HOM05D001004 ORTHO05D000653 7.7e-06 53.9 65 40.0
Thecc.10G078200 Theobroma cacao HOM05D001004 ORTHO05D000653 7.7e-06 53.9 65 44.6
vmacro02638 Vaccinium macrocarpon HOM05D001004 ORTHO05D000653 7.7e-06 53.9 65 43.1


User provided reference genes

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