Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 0.0e+00 1171.4 618 100.0
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 1.6e-269 932.6 618 79.4
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 3.1e-265 918.3 618 78.6
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.8e-260 902.5 619 77.9
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 7.7e-256 887.1 618 76.4
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 6.5e-255 884.0 617 76.2
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 2.5e-254 882.1 618 76.5
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 5.5e-254 880.9 619 77.2
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.6e-253 879.4 618 75.9
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 4.7e-253 877.9 618 76.1
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.0e-252 876.7 621 77.3
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 3.0e-252 875.2 617 75.5
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 4.0e-252 874.8 618 75.7
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.8e-250 868.6 618 75.4
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 1.8e-249 865.9 618 74.9
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 7.0e-249 864.0 620 74.8
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.3e-247 859.8 592 76.4
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 8.6e-247 857.1 618 74.1
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 4.3e-246 854.7 597 76.2
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.6e-245 851.7 613 74.6
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 2.6e-243 845.5 618 73.5
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 1.3e-242 843.2 618 72.7
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.7e-242 842.8 618 73.3
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.7e-242 842.8 614 73.9
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.2e-242 842.4 618 73.3
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 8.3e-242 840.5 618 72.5
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.4e-241 839.7 618 72.7
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 2.4e-241 839.0 620 73.9
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 2.4e-241 839.0 618 73.3
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 4.1e-241 838.2 623 71.4
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.2e-240 836.6 619 72.4
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.2e-240 836.6 618 71.7
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.6e-240 836.3 618 71.7
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 2.0e-240 835.9 612 72.9
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 5.9e-240 834.3 618 71.5
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 5.9e-240 834.3 613 72.1
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.7e-239 832.8 618 71.7
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 3.0e-239 832.0 614 73.1
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 3.9e-239 831.6 620 71.3
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 5.0e-239 831.2 613 71.5
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 8.6e-239 830.5 613 72.9
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 2.5e-238 828.9 618 73.3
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 3.3e-238 828.6 618 72.3
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.3e-238 828.2 618 71.7
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 7.3e-238 827.4 618 72.7
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 7.3e-238 827.4 618 71.7
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 7.3e-238 827.4 617 72.6
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.2e-237 826.6 609 72.7
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.2e-237 826.6 613 72.6
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 1.6e-237 826.2 609 71.9
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 2.8e-237 825.5 618 72.5
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 4.7e-237 824.7 615 72.5
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 8.0e-237 823.9 619 72.2
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.4e-236 823.2 619 72.1
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.8e-236 822.8 617 71.2
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 4.0e-236 821.6 613 72.6
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 5.2e-236 821.2 532 81.4
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 5.2e-236 821.2 618 72.3
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 5.2e-236 821.2 609 71.9
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 8.9e-236 820.5 614 71.5
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 1.2e-235 820.1 621 72.1
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 1.5e-235 819.7 617 71.6
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 5.8e-235 817.8 616 70.3
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 7.5e-235 817.4 618 73.0
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.7e-234 816.2 612 71.4
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 4.9e-234 814.7 620 71.5
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.1e-233 813.5 618 71.2
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 1.1e-233 813.5 613 71.8
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 1.9e-233 812.8 612 71.4
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 4.1e-233 811.6 593 75.0
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 9.2e-233 810.4 612 70.8
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 3.5e-232 808.5 618 70.7
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 1.3e-231 806.6 618 70.1
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.3e-231 805.8 586 73.4
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 8.6e-231 803.9 612 70.6
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.1e-230 803.5 612 70.3
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.1e-230 803.5 614 70.0
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 4.3e-230 801.6 612 70.8
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 7.3e-230 800.8 614 70.2
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 7.3e-230 800.8 614 70.2
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 7.3e-230 800.8 649 67.2
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 1.6e-229 799.7 612 70.1
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.6e-229 799.7 612 70.8
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 6.2e-229 797.7 587 73.3
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 8.1e-229 797.3 614 69.9
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 1.8e-228 796.2 612 69.8
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.8e-228 796.2 618 69.4
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 6.8e-228 794.3 529 79.0
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.5e-227 793.1 617 69.2
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 2.0e-227 792.7 616 69.3
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 2.6e-227 792.3 614 69.2
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.3e-226 790.0 616 69.3
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.3e-226 790.0 614 68.6
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 4.9e-226 788.1 615 68.6
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 8.3e-226 787.3 600 70.5
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 8.3e-226 787.3 613 69.5
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.1e-225 786.9 614 69.1
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.4e-225 785.8 621 69.9
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 2.4e-225 785.8 610 69.5
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 7.1e-225 784.3 615 69.3
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 7.1e-225 784.3 718 61.1
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 9.2e-225 783.9 614 68.6
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 2.7e-224 782.3 720 62.4
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 3.5e-224 781.9 621 69.6
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 3.5e-224 781.9 610 69.7
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.3e-223 779.2 613 68.0
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 6.6e-223 777.7 614 67.1
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 6.6e-223 777.7 618 68.3
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 1.1e-222 776.9 600 70.3
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 1.9e-222 776.2 621 69.2
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 2.5e-222 775.8 614 68.7
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.6e-221 773.1 617 69.5
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 5.4e-209 731.5 617 64.8
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 8.7e-207 724.2 630 64.8
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 2.5e-206 722.6 592 66.6
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 6.2e-205 718.0 594 65.5
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 6.0e-200 701.4 616 61.9
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 2.5e-198 696.0 509 73.9
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 2.8e-197 692.6 613 62.5
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 1.1e-193 680.6 543 68.0
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.5e-187 660.2 613 60.2
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 5.7e-182 641.7 454 76.4
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 1.4e-180 637.1 507 70.8
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 5.7e-174 615.1 470 71.1
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.0e-171 606.7 499 66.3
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 1.6e-155 553.9 558 58.4
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 8.0e-152 541.6 400 72.8
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 3.0e-143 513.1 328 82.3
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 2.4e-140 503.4 393 69.2
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 8.9e-135 485.0 599 53.6
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 2.2e-133 480.3 540 50.4
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.1e-128 463.8 400 66.0
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 4.4e-118 429.5 330 71.5
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 2.2e-109 400.6 540 45.7
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.9e-108 397.5 252 82.1
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 5.4e-92 342.8 575 40.0
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.1e-90 336.3 228 78.5
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 2.1e-88 330.9 229 74.7
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.2e-77 294.3 229 71.6
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 1.3e-66 258.5 210 64.3
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 7.7e-62 242.7 256 50.8
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 8.2e-56 222.6 356 38.2
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 1.3e-45 188.7 114 82.5
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 1.9e-44 184.9 246 44.7
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 4.5e-38 163.7 129 65.9
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 3.5e-30 137.5 137 57.7
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 1.0e-21 109.4 106 57.5
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.0e-21 109.4 215 39.5
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 8.0e-19 99.8 104 52.9
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.2e-17 95.9 52 84.6
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 2.0e-17 95.1 186 37.1
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 2.4e-15 88.2 102 53.9
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 2.4e-15 88.2 52 86.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 2.4e-15 88.2 52 86.5
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 6.6e-13 80.1 65 67.7
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.3e-10 71.6 60 61.7
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 5.8e-09 67.0 57 56.1
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 1.1e-07 62.8 61 57.4
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 1.1e-07 62.8 61 57.4
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 1.2e-06 59.3 61 55.7
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 7.8e-06 56.6 57 43.9


User provided reference genes

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