Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu006302.1 Olea europaea HOM05D000504 ORTHO05D000403 3.1e-50 201.4 99 100.0
Cc11_g05720 Coffea canephora HOM05D000504 ORTHO05D000403 7.0e-34 147.1 103 76.7
SalBow2G1461 Salvia bowleyana HOM05D000504 ORTHO05D000403 1.2e-33 146.4 105 73.3
PGSC0003DMG400029498 Solanum tuberosum HOM05D000504 ORTHO05D000403 1.6e-33 146.0 103 74.8
Sopen04g003410 Solanum pennellii HOM05D000504 ORTHO05D000403 5.9e-33 144.1 103 73.8
Nitab4.5_0005959g0010 Nicotiana tabacum HOM05D000504 ORTHO05D000403 1.0e-32 143.3 103 73.8
Solyc04g008290.4 Solanum lycopersicum HOM05D000504 ORTHO05D000403 1.7e-32 142.5 103 72.8
CAN.G966.3 Capsicum annuum HOM05D000504 ORTHO05D000403 2.3e-32 142.1 105 72.4
Peaxi162Scf00337g00112 Petunia axillaris HOM05D000504 ORTHO05D000403 3.8e-32 141.4 103 71.8
Migut.L00593 Erythranthe guttata HOM05D000504 ORTHO05D000403 6.6e-32 140.6 103 73.8
Migut.L00618 Erythranthe guttata HOM05D000504 ORTHO05D000403 6.6e-32 140.6 103 73.8
ClCG01G006790 Citrullus lanatus HOM05D000504 ORTHO05D000403 4.3e-31 137.9 103 69.9
Dinv08899 Davidia involucrata HOM05D000504 ORTHO05D000403 5.6e-31 137.5 101 74.3
MSTRG.8105 Avicennia marina HOM05D000504 ORTHO05D000403 1.2e-30 136.3 103 71.8
MELO3C005241.2 Cucumis melo HOM05D000504 ORTHO05D000403 1.6e-30 136.0 103 69.9
CsaV3_5G017120 Cucumis sativus L. HOM05D000504 ORTHO05D000403 1.6e-30 136.0 103 69.9
GSVIVG01011594001 Vitis vinifera HOM05D000504 ORTHO05D000403 3.6e-30 134.8 101 69.3
Sed0006801 Sechium edule HOM05D000504 ORTHO05D000403 4.7e-30 134.4 103 68.0
Actinidia11792 Actinidia chinensis HOM05D000504 ORTHO05D000403 1.0e-29 133.3 101 69.3
Cfa023049 Carpinus fangiana HOM05D000504 ORTHO05D000403 1.0e-29 133.3 104 66.3
Nn4g24548 Nelumbo nucifera HOM05D000504 ORTHO05D000403 1.0e-29 133.3 101 69.3
CiPaw.06G058500 Carya illinoinensis HOM05D000504 ORTHO05D000403 1.8e-29 132.5 101 67.3
Haze_10813 Corylus avellana HOM05D000504 ORTHO05D000403 1.8e-29 132.5 101 68.3
Manes.15G138700 Manihot esculenta HOM05D000504 ORTHO05D000403 2.3e-29 132.1 101 70.3
Nn3g18465 Nelumbo nucifera HOM05D000504 ORTHO05D000403 4.0e-29 131.3 101 69.3
Nitab4.5_0001935g0020 Nicotiana tabacum HOM05D000504 ORTHO05D000403 5.2e-29 131.0 103 68.0
QL03p039163 Quercus lobata HOM05D000504 ORTHO05D000403 1.2e-28 129.8 102 68.6
CANSAT78G2441 Cannabis sativa HOM05D000504 ORTHO05D000403 1.5e-28 129.4 101 66.3
Prupe.1G338100 Prunus persica HOM05D000504 ORTHO05D000403 1.5e-28 129.4 101 67.3
TWI74G0759 Tripterygium wilfordii HOM05D000504 ORTHO05D000403 1.5e-28 129.4 103 67.0
Nitab4.5_0000521g0040 Nicotiana tabacum HOM05D000504 ORTHO05D000403 2.0e-28 129.0 103 67.0
Potri.008G139700 Populus trichocarpa HOM05D000504 ORTHO05D000403 2.0e-28 129.0 103 67.0
TWI77G1033 Tripterygium wilfordii HOM05D000504 ORTHO05D000403 2.0e-28 129.0 103 66.0
DCAR_002654 Daucus carota HOM05D000504 ORTHO05D000403 2.6e-28 128.6 101 67.3
Duzib268G0280 Durio zibethinus HOM05D000504 ORTHO05D000403 4.4e-28 127.9 102 66.7
FvH4_4g26120 Fragaria vesca HOM05D000504 ORTHO05D000403 5.7e-28 127.5 102 68.6
FAN12G1299 Fragaria x ananassa HOM05D000504 ORTHO05D000403 5.7e-28 127.5 102 68.6
FAN12G1382 Fragaria x ananassa HOM05D000504 ORTHO05D000403 5.7e-28 127.5 102 68.6
Thecc.02G303800 Theobroma cacao HOM05D000504 ORTHO05D000403 5.7e-28 127.5 102 67.6
Sopen01g001020 Solanum pennellii HOM05D000504 ORTHO05D000403 7.5e-28 127.1 103 67.0
MD16G1013200 Malus domestica HOM05D000504 ORTHO05D000403 9.8e-28 126.7 102 67.6
CAN.G282.102 Capsicum annuum HOM05D000504 ORTHO05D000403 1.3e-27 126.3 104 68.3
RcHm_v2.0_Chr4g0433691 Rosa chinensis HOM05D000504 ORTHO05D000403 1.3e-27 126.3 102 67.6
Sabra08G0105900 Salix brachista HOM05D000504 ORTHO05D000403 1.3e-27 126.3 103 65.0
PGSC0003DMG400022788 Solanum tuberosum HOM05D000504 ORTHO05D000403 2.2e-27 125.6 103 66.0
COL.COLO4_27581 Corchorus olitorius HOM05D000504 ORTHO05D000403 2.9e-27 125.2 102 65.7
Rhsim09G0085500 Rhododendron simsii HOM05D000504 ORTHO05D000403 2.9e-27 125.2 104 63.5
TAR172G0001 Trochodendron aralioides HOM05D000504 ORTHO05D000403 2.9e-27 125.2 103 64.1
FAN07G2470 Fragaria x ananassa HOM05D000504 ORTHO05D000403 4.9e-27 124.4 102 67.6
FAN22G0806 Fragaria x ananassa HOM05D000504 ORTHO05D000403 4.9e-27 124.4 102 67.6
Gohir.A03G113200 Gossypium hirsutum HOM05D000504 ORTHO05D000403 1.1e-26 123.2 103 67.0
Gorai.005G154000 Gossypium raimondii HOM05D000504 ORTHO05D000403 1.1e-26 123.2 103 67.0
Solyc01g005080.3 Solanum lycopersicum HOM05D000504 ORTHO05D000403 1.1e-26 123.2 103 65.0
Lj2g0028204 Lotus japonicus HOM05D000504 ORTHO05D000403 1.8e-26 122.5 110 60.9
Cpa.g.sc326.4 Carica papaya HOM05D000504 ORTHO05D000403 2.4e-26 122.1 104 64.4
Eucgr.G02071 Eucalyptus grandis HOM05D000504 ORTHO05D000403 2.4e-26 122.1 106 63.2
Sed0006531 Sechium edule HOM05D000504 ORTHO05D000403 2.4e-26 122.1 103 64.1
Nitab4.5_0000926g0070 Nicotiana tabacum HOM05D000504 ORTHO05D000403 4.1e-26 121.3 92 70.7
Gohir.D02G137500 Gossypium hirsutum HOM05D000504 ORTHO05D000403 5.4e-26 120.9 103 66.0
Lj3C859T12 Lonicera japonica HOM05D000504 ORTHO05D000403 5.4e-26 120.9 108 64.8
TAR622G0334 Trochodendron aralioides HOM05D000504 ORTHO05D000403 7.0e-26 120.6 101 65.3
Glyma.09G285100 Glycine max HOM05D000504 ORTHO05D000403 9.2e-26 120.2 106 61.3
Glyma.20G001000 Glycine max HOM05D000504 ORTHO05D000403 9.2e-26 120.2 106 61.3
CSS0026024 Camellia sinensis var. sinensis HOM05D000504 ORTHO05D000403 1.6e-25 119.4 97 67.0
VMungo0251G2455 Vigna mungo HOM05D000504 ORTHO05D000403 1.6e-25 119.4 106 60.4
MBI19_g01915_MAGBIO Magnolia biondii HOM05D000504 ORTHO05D000403 2.0e-25 119.0 104 62.5
PGR142G2524 Punica granatum HOM05D000504 ORTHO05D000403 4.6e-25 117.9 106 60.4
Ciclev10014662m.g Citrus clementina HOM05D000504 ORTHO05D000403 5.9e-25 117.5 104 62.5
Hma1.2p1_1525F.1_g288900 Hydrangea macrophylla HOM05D000504 ORTHO05D000403 5.9e-25 117.5 103 66.0
Phvul.003G002000 Phaseolus vulgaris HOM05D000504 ORTHO05D000403 5.9e-25 117.5 106 59.4
THA.LOC104824080 Tarenaya hassleriana HOM05D000504 ORTHO05D000403 5.9e-25 117.5 100 63.0
CDE05G0765 Ceratophyllum demersum HOM05D000504 ORTHO05D000403 7.8e-25 117.1 101 64.4
Lj6C731T16 Lonicera japonica HOM05D000504 ORTHO05D000403 7.8e-25 117.1 104 63.5
PSO063G6957 Papaver somniferum HOM05D000504 ORTHO05D000403 7.8e-25 117.1 101 63.4
PSO782G5459 Papaver somniferum HOM05D000504 ORTHO05D000403 7.8e-25 117.1 101 63.4
HanXRQChr08g0224281 Helianthus annuus HOM05D000504 ORTHO05D000403 1.0e-24 116.7 101 61.4
Ca_12378_v3 Cicer arietinum L. HOM05D000504 ORTHO05D000403 1.3e-24 116.3 107 59.8
Ca_12379_v3 Cicer arietinum L. HOM05D000504 ORTHO05D000403 1.3e-24 116.3 107 59.8
Aqoxy3G04011 Aquilegia oxysepala HOM05D000504 ORTHO05D000403 1.7e-24 115.9 101 63.4
arahy.Tifrunner.gnm1.ann1.NL2WBX Arachis hypogaea HOM05D000504 ORTHO05D000403 3.9e-24 114.8 108 61.1
CDE11G1149 Ceratophyllum demersum HOM05D000504 ORTHO05D000403 5.0e-24 114.4 101 62.4
ECA233G5941 Erigeron canadensis HOM05D000504 ORTHO05D000403 5.0e-24 114.4 104 60.6
HanXRQChr15g0471801 Helianthus annuus HOM05D000504 ORTHO05D000403 5.0e-24 114.4 95 61.1
Medtr1g038840 Medicago truncatula HOM05D000504 ORTHO05D000403 6.6e-24 114.0 113 55.8
DCAR_030307 Daucus carota HOM05D000504 ORTHO05D000403 3.3e-23 111.7 103 62.1
Oeu044078.1 Olea europaea HOM05D000504 ORTHO05D000403 3.3e-23 111.7 103 64.1
TPR.G35530 Trifolium pratense HOM05D000504 ORTHO05D000403 4.3e-23 111.3 113 55.8
HPP92_016408 Vanilla planifolia HOM05D000504 ORTHO05D000403 5.6e-23 110.9 102 59.8
Sc03g0006800 Simmondsia chinensis HOM05D000504 ORTHO05D000403 1.6e-22 109.4 103 60.2
arahy.Tifrunner.gnm1.ann1.6JN252 Arachis hypogaea HOM05D000504 ORTHO05D000403 1.1e-21 106.7 102 58.8
Lsat_1_v5_gn_8_34601 Lactuca sativa HOM05D000504 ORTHO05D000403 1.4e-21 106.3 92 60.9
Lalb_Chr10g0094871 Lupinus albus HOM05D000504 ORTHO05D000403 5.2e-21 104.4 104 56.7
THA.LOC104824116 Tarenaya hassleriana HOM05D000504 ORTHO05D000403 5.2e-21 104.4 107 57.0
Os03g0237600 Oryza sativa ssp. japonica HOM05D000504 ORTHO05D000403 8.9e-21 103.6 105 52.4
Lalb_Chr04g0258991 Lupinus albus HOM05D000504 ORTHO05D000403 1.2e-20 103.2 104 56.7
Sp1g13100 Schrenkiella parvula HOM05D000504 ORTHO05D000403 2.0e-20 102.4 102 55.9
ATR0598G138 Amborella trichopoda HOM05D000504 ORTHO05D000403 2.6e-20 102.1 103 56.3
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 2.6e-20 102.1 90 62.2
AL1G26700 Arabidopsis lyrata HOM05D000504 ORTHO05D000403 3.4e-20 101.7 101 54.5
BcaB07g30365 Brassica carinata HOM05D000504 ORTHO05D000403 3.4e-20 101.7 109 54.1
Thhalv10004009m.g Eutrema salsugineum HOM05D000504 ORTHO05D000403 3.4e-20 101.7 109 55.0
Sp2g13340 Schrenkiella parvula HOM05D000504 ORTHO05D000403 3.4e-20 101.7 109 54.1
AT2G01910 Arabidopsis thaliana HOM05D000504 ORTHO05D000403 4.4e-20 101.3 109 54.1
Aa31LG2G8000 Aethionema arabicum HOM05D000504 ORTHO05D000403 5.8e-20 100.9 107 55.1
BcaC06g31263 Brassica carinata HOM05D000504 ORTHO05D000403 5.8e-20 100.9 109 54.1
BcaC06g34097 Brassica carinata HOM05D000504 ORTHO05D000403 9.8e-20 100.1 109 54.1
A06p43930 Brassica napus HOM05D000504 ORTHO05D000403 9.8e-20 100.1 109 54.1
C07p32750 Brassica napus HOM05D000504 ORTHO05D000403 9.8e-20 100.1 109 54.1
BraA06t27269Z Brassica rapa HOM05D000504 ORTHO05D000403 9.8e-20 100.1 109 54.1
Carub.0001s1448 Capsella rubella HOM05D000504 ORTHO05D000403 1.7e-19 99.4 101 55.4
AT1G14690 Arabidopsis thaliana HOM05D000504 ORTHO05D000403 2.2e-19 99.0 102 55.9
BcaC03g17095 Brassica carinata HOM05D000504 ORTHO05D000403 2.2e-19 99.0 109 54.1
CARHR015220 Cardamine hirsuta HOM05D000504 ORTHO05D000403 2.2e-19 99.0 104 53.8
Zm00001eb010070 Zea mays HOM05D000504 ORTHO05D000403 2.9e-19 98.6 105 52.4
AL5G11030 Arabidopsis lyrata HOM05D000504 ORTHO05D000403 8.3e-19 97.1 109 52.3
Carub.0005s0091 Capsella rubella HOM05D000504 ORTHO05D000403 1.1e-18 96.7 109 51.4
CARHR144500 Cardamine hirsuta HOM05D000504 ORTHO05D000403 1.1e-18 96.7 111 51.4
C02p50060 Brassica napus HOM05D000504 ORTHO05D000403 3.2e-18 95.1 109 53.2
Aa31LG1G390 Aethionema arabicum HOM05D000504 ORTHO05D000403 7.0e-18 94.0 102 52.9
Thhalv10007124m.g Eutrema salsugineum HOM05D000504 ORTHO05D000403 1.6e-17 92.8 104 51.9
C08p45510 Brassica napus HOM05D000504 ORTHO05D000403 2.7e-17 92.0 102 54.9
Zm00001eb314600 Zea mays HOM05D000504 ORTHO05D000403 2.7e-17 92.0 106 53.8
Os09g0450300 Oryza sativa ssp. japonica HOM05D000504 ORTHO05D000403 3.5e-17 91.7 106 51.9
BraA09t41555Z Brassica rapa HOM05D000504 ORTHO05D000403 6.0e-17 90.9 102 54.9
BcaC07g41548 Brassica carinata HOM05D000504 ORTHO05D000403 7.8e-17 90.5 102 54.9
A09p61880 Brassica napus HOM05D000504 ORTHO05D000403 1.7e-16 89.4 102 54.9
BolC8t52103H Brassica oleracea HOM05D000504 ORTHO05D000403 1.7e-16 89.4 100 55.0
BcaC07g41547 Brassica carinata HOM05D000504 ORTHO05D000403 5.0e-16 87.8 103 52.4
ECA246G1207 Erigeron canadensis HOM05D000504 ORTHO05D000403 1.5e-15 86.3 82 51.2
Dinv20506 Davidia involucrata HOM05D000504 ORTHO05D000403 1.9e-15 85.9 64 68.8
Dinv20535 Davidia involucrata HOM05D000504 ORTHO05D000403 1.9e-15 85.9 64 68.8
BcaNung07227 Brassica carinata HOM05D000504 ORTHO05D000403 4.7e-14 81.3 87 52.9
BolC7t43792H Brassica oleracea HOM05D000504 ORTHO05D000403 4.7e-14 81.3 83 55.4
unitig_699.g19976 Utricularia gibba HOM05D000504 ORTHO05D000403 1.4e-13 79.7 74 64.9


User provided reference genes

Program Settings