Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 1.9e-59 232.3 113 100.0
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 2.6e-56 221.9 110 96.4
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 4.5e-53 211.1 107 91.6
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 2.9e-52 208.4 107 92.5
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 3.8e-52 208.0 107 91.6
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 6.5e-52 207.2 111 87.4
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 1.1e-51 206.5 110 86.4
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.1e-51 206.5 107 90.7
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 1.9e-51 205.7 107 91.6
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 2.5e-51 205.3 107 88.8
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 3.2e-51 204.9 107 90.7
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 3.2e-51 204.9 107 91.6
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 5.5e-51 204.1 107 91.6
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 5.5e-51 204.1 107 89.7
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 5.5e-51 204.1 107 88.8
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 5.5e-51 204.1 107 90.7
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 5.5e-51 204.1 107 88.8
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 7.2e-51 203.8 107 89.7
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 9.4e-51 203.4 107 88.8
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 2.7e-50 201.8 107 90.7
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 2.7e-50 201.8 107 89.7
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 2.7e-50 201.8 107 90.7
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 2.7e-50 201.8 107 90.7
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 2.7e-50 201.8 107 87.9
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 2.7e-50 201.8 107 87.9
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.7e-50 201.8 107 87.9
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.6e-50 201.4 107 87.9
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.6e-50 201.4 107 87.9
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 3.6e-50 201.4 107 88.8
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 3.6e-50 201.4 107 88.8
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 4.7e-50 201.1 107 87.9
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 6.1e-50 200.7 107 87.9
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 8.0e-50 200.3 107 88.8
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.0e-49 199.9 107 88.8
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.0e-49 199.9 107 87.9
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.0e-49 199.9 111 83.8
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.0e-49 199.9 108 89.8
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.4e-49 199.5 107 86.9
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.4e-49 199.5 108 84.3
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.4e-49 199.5 108 88.9
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 1.4e-49 199.5 107 87.9
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.8e-49 199.1 107 86.0
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 2.3e-49 198.7 107 88.8
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 3.0e-49 198.4 107 88.8
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 3.0e-49 198.4 107 87.9
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 3.0e-49 198.4 110 85.5
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 5.2e-49 197.6 107 86.0
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 5.2e-49 197.6 109 83.5
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 6.7e-49 197.2 107 86.9
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 6.7e-49 197.2 107 86.0
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 6.7e-49 197.2 107 88.8
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 6.7e-49 197.2 107 86.9
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 8.8e-49 196.8 107 87.9
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 8.8e-49 196.8 107 87.9
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 8.8e-49 196.8 107 87.9
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 8.8e-49 196.8 107 87.9
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 8.8e-49 196.8 107 87.9
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 8.8e-49 196.8 107 85.0
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 8.8e-49 196.8 108 85.2
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 8.8e-49 196.8 107 84.1
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 8.8e-49 196.8 107 84.1
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 8.8e-49 196.8 107 86.0
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 8.8e-49 196.8 107 86.9
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 8.8e-49 196.8 107 86.9
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 1.2e-48 196.4 109 87.2
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 1.2e-48 196.4 107 85.0
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.2e-48 196.4 107 84.1
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 1.5e-48 196.1 107 86.9
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 1.5e-48 196.1 107 86.9
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 1.5e-48 196.1 107 86.9
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 2.0e-48 195.7 107 87.9
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 2.0e-48 195.7 107 85.0
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 2.0e-48 195.7 107 85.0
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 2.0e-48 195.7 107 86.0
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.0e-48 195.7 107 85.0
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 2.6e-48 195.3 107 86.0
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 2.6e-48 195.3 107 86.9
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 2.6e-48 195.3 107 86.0
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 2.6e-48 195.3 107 86.0
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 2.6e-48 195.3 107 86.9
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 4.4e-48 194.5 107 86.9
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 4.4e-48 194.5 109 81.7
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 5.7e-48 194.1 107 86.9
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 5.7e-48 194.1 107 86.9
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 5.7e-48 194.1 107 86.9
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 7.5e-48 193.7 109 86.2
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 7.5e-48 193.7 108 87.0
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 9.7e-48 193.4 107 84.1
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 1.3e-47 193.0 107 83.2
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.7e-47 192.6 107 84.1
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 1.7e-47 192.6 107 84.1
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 1.7e-47 192.6 107 84.1
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 2.8e-47 191.8 107 83.2
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 6.3e-47 190.7 107 84.1
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 6.3e-47 190.7 107 80.4
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 8.2e-47 190.3 115 80.9
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 8.2e-47 190.3 107 84.1
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.1e-46 189.9 107 84.1
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.4e-46 189.5 107 84.1
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 1.4e-46 189.5 107 82.2
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 2.4e-46 188.7 107 84.1
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 3.1e-46 188.3 108 85.2
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 4.1e-46 188.0 108 85.2
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 4.1e-46 188.0 107 83.2
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.1e-46 188.0 107 83.2
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 5.3e-46 187.6 107 81.3
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 5.3e-46 187.6 107 81.3
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 7.0e-46 187.2 107 83.2
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 9.1e-46 186.8 107 81.3
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.2e-45 186.4 107 82.2
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.6e-45 186.0 107 84.1
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.0e-45 185.7 107 82.2
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 2.7e-45 185.3 107 83.2
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 3.5e-45 184.9 107 84.1
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 3.5e-45 184.9 107 83.2
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 7.7e-45 183.7 107 79.4
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 2.2e-44 182.2 95 87.4
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 2.9e-44 181.8 107 79.4
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.5e-43 178.7 107 79.4
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 3.2e-43 178.3 107 77.6
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 3.2e-43 178.3 136 66.9
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 9.4e-43 176.8 107 74.8
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 1.8e-41 172.6 107 75.7
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 1.5e-40 169.5 105 75.2
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 4.8e-39 164.5 107 71.0
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.1e-38 163.3 126 64.3
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 3.1e-38 161.8 142 58.5
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 9.1e-38 160.2 75 96.0
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 1.6e-37 159.5 75 94.7
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 5.9e-37 157.5 75 92.0
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 1.3e-36 156.4 75 93.3
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 9.8e-32 140.2 104 64.4
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.3e-31 139.8 75 89.3
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.8e-30 136.0 75 85.3
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 5.4e-30 134.4 79 79.7
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 3.3e-27 125.2 75 76.0
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 1.2e-26 123.2 85 62.4
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.4e-25 119.8 86 68.6
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 3.0e-25 118.6 107 58.9
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.6e-24 115.5 86 65.1
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 5.7e-24 114.4 103 52.4
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.2e-23 112.5 75 72.0
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 4.9e-23 111.3 88 65.9
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 2.4e-22 109.0 75 69.3
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 4.1e-22 108.2 63 76.2
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 2.3e-20 102.4 89 53.9
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 5.0e-20 101.3 97 55.7
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 3.6e-18 95.1 72 66.7
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 1.1e-17 93.6 78 55.1
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 4.0e-17 91.7 75 62.7
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.7e-15 85.1 43 90.7
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 4.9e-15 84.7 47 80.9
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 6.4e-15 84.3 47 83.0
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 1.5e-11 73.2 104 42.3
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 1.1e-09 67.0 45 73.3
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 6.4e-07 57.8 42 69.0


User provided reference genes

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