Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 9.1e-195 683.3 330 100.0
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 2.6e-165 585.5 351 81.2
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 2.9e-161 572.0 350 79.1
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.5e-160 569.7 353 77.1
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 1.9e-160 569.3 354 76.8
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 1.6e-159 566.2 350 77.4
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 6.8e-158 560.8 368 74.5
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 6.8e-158 560.8 354 76.0
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 3.4e-157 558.5 343 76.4
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 3.4e-157 558.5 352 75.3
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 3.4e-157 558.5 347 76.9
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 7.5e-157 557.4 353 75.6
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 9.8e-157 557.0 354 74.9
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 1.3e-156 556.6 305 84.9
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 1.7e-156 556.2 383 72.3
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 2.2e-156 555.8 354 75.1
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 3.7e-156 555.1 354 75.1
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.1e-155 553.5 354 74.0
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.6e-154 549.7 351 74.6
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 1.6e-154 549.7 354 73.4
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 1.7e-153 546.2 350 73.7
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 2.3e-153 545.8 359 74.7
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 2.9e-153 545.4 354 73.2
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 5.0e-153 544.7 350 73.4
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 6.6e-153 544.3 354 73.2
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 6.6e-153 544.3 350 73.4
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 1.9e-152 542.7 352 72.7
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 1.9e-152 542.7 337 76.3
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 3.3e-152 542.0 356 73.0
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 4.3e-152 541.6 354 72.3
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 4.3e-152 541.6 354 74.0
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 7.3e-152 540.8 353 72.5
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 9.5e-152 540.4 350 72.3
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.2e-151 540.0 354 72.3
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 1.6e-151 539.7 352 73.3
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.8e-151 538.9 354 72.3
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 6.1e-151 537.7 380 71.1
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.0e-150 537.0 354 72.6
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 1.0e-150 537.0 355 72.1
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 1.8e-150 536.2 354 72.0
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 2.3e-150 535.8 354 72.0
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.0e-150 535.0 349 73.9
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 1.5e-149 533.1 354 71.5
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 4.4e-149 531.6 354 71.5
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 5.8e-149 531.2 354 71.8
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 7.5e-149 530.8 349 73.1
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 9.8e-149 530.4 354 71.5
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.7e-148 529.6 350 72.6
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 2.9e-148 528.9 356 71.3
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 3.7e-148 528.5 360 70.3
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.7e-148 528.5 342 72.8
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 6.4e-148 527.7 354 70.9
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 8.3e-148 527.3 350 72.9
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.1e-147 526.9 352 71.3
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 2.4e-147 525.8 348 71.0
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.1e-147 525.0 342 72.8
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 4.1e-147 525.0 354 69.5
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 9.2e-147 523.9 354 70.3
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 2.0e-146 522.7 350 71.4
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 2.7e-146 522.3 355 69.6
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 3.5e-146 521.9 352 70.7
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 6.0e-146 521.2 352 69.9
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 1.3e-145 520.0 355 70.1
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 5.0e-145 518.1 352 70.2
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 1.1e-144 516.9 354 69.8
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 1.5e-144 516.5 375 66.1
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 1.5e-144 516.5 351 69.5
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 1.9e-144 516.2 341 73.3
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 2.5e-144 515.8 354 69.8
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 1.6e-143 513.1 343 70.8
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 2.8e-143 512.3 338 72.2
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 1.1e-142 510.4 349 69.6
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 8.9e-142 507.3 353 70.0
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.2e-141 506.9 318 76.7
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.5e-141 506.5 342 71.9
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 5.8e-141 504.6 335 72.5
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 2.7e-138 495.7 356 71.6
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 1.7e-137 493.0 351 67.5
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 3.0e-137 492.3 360 66.4
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 6.2e-135 484.6 351 66.4
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 9.9e-133 477.2 321 72.0
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 1.7e-129 466.5 339 65.5
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 5.1e-129 464.9 320 70.3
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 3.3e-128 462.2 338 68.3
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 4.3e-128 461.8 496 51.2
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 8.4e-124 447.6 326 68.1
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 2.4e-123 446.0 342 65.5
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 3.9e-121 438.7 328 67.1
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.8e-118 429.9 325 62.8
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 2.6e-117 426.0 326 64.7
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 1.1e-110 404.1 331 59.5
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 9.9e-109 397.5 317 63.4
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 8.4e-108 394.4 330 60.0
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 6.0e-106 388.3 304 62.5
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 3.0e-105 386.0 354 57.3
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 7.4e-104 381.3 338 54.4
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 1.4e-102 377.1 197 90.9
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 6.9e-102 374.8 319 58.6
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.1e-99 367.5 317 57.7
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 3.2e-99 365.9 195 87.7
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.2e-98 364.0 195 87.7
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 2.7e-98 362.8 328 56.7
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 5.1e-97 358.6 195 85.6
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 6.9e-94 348.2 195 82.6
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 1.5e-93 347.1 328 57.0
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 2.2e-92 343.2 195 79.5
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 3.2e-91 339.3 290 60.7
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 9.3e-91 337.8 195 79.5
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 3.3e-88 329.3 207 73.9
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 3.3e-88 329.3 340 46.8
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 4.3e-88 328.9 328 53.4
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 7.7e-85 318.2 196 77.0
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 2.9e-84 316.2 324 52.5
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 9.1e-78 294.7 290 57.2
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.2e-74 284.3 170 80.0
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.2e-74 284.3 170 80.0
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 5.1e-73 278.9 161 81.4
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 5.7e-72 275.4 152 84.2
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 2.6e-69 266.5 163 74.2
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 9.4e-67 258.1 338 41.7
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 6.8e-57 225.3 126 80.2
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 2.4e-54 216.9 130 75.4
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.0e-52 211.5 140 69.3
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 6.5e-52 208.8 133 71.4
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 2.7e-50 203.4 127 73.2
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 1.4e-49 201.1 131 72.5
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 9.1e-46 188.3 123 66.7
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.9e-43 180.6 95 87.4
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 8.3e-39 165.2 165 53.9
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 6.2e-34 149.1 96 66.7
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.4e-33 147.9 99 71.7
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 3.4e-32 143.3 84 76.2
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 6.4e-31 139.0 185 41.6
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 1.9e-30 137.5 108 60.2
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 6.4e-23 112.5 73 74.0
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 4.4e-16 89.7 64 67.2
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 7.6e-16 89.0 45 88.9
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 2.1e-13 80.9 48 68.8


User provided reference genes

Program Settings