Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 1.2e-29 132.5 64 100.0
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 7.0e-19 96.7 63 69.8
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.7e-18 94.7 55 72.7
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 4.6e-18 94.0 53 75.5
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 1.7e-17 92.0 57 71.9
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 1.7e-17 92.0 58 69.0
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 3.9e-17 90.9 57 66.7
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 6.6e-17 90.1 62 59.7
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 6.6e-17 90.1 62 58.1
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 1.1e-16 89.4 62 61.3
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 1.9e-16 88.6 63 58.7
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 2.5e-16 88.2 63 60.3
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 4.3e-16 87.4 62 58.1
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 5.6e-16 87.0 59 67.8
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 7.3e-16 86.7 55 63.6
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 9.5e-16 86.3 47 76.6
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 9.5e-16 86.3 61 63.9
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 1.6e-15 85.5 56 64.3
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 2.1e-15 85.1 59 66.1
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 2.1e-15 85.1 55 69.1
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 6.2e-15 83.6 60 63.3
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 1.0e-14 82.8 56 66.1
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 4.0e-14 80.9 51 66.7
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 4.0e-14 80.9 51 66.7
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 4.0e-14 80.9 54 64.8
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 6.8e-14 80.1 49 75.5
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 6.8e-14 80.1 64 59.4
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 6.8e-14 80.1 53 62.3
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 6.8e-14 80.1 53 62.3
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 6.8e-14 80.1 53 62.3
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 8.9e-14 79.7 51 64.7
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 8.9e-14 79.7 56 62.5
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 8.9e-14 79.7 60 63.3
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 8.9e-14 79.7 60 63.3
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 8.9e-14 79.7 56 60.7
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 2.0e-13 78.6 57 57.9
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 2.0e-13 78.6 61 57.4
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 3.4e-13 77.8 65 56.9
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 3.4e-13 77.8 48 66.7
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 4.4e-13 77.4 54 57.4
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 4.4e-13 77.4 58 60.3
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 7.5e-13 76.6 54 55.6
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 1.3e-12 75.9 58 62.1
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 1.7e-12 75.5 54 59.3
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.7e-12 75.5 54 59.3
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 3.7e-12 74.3 50 60.0
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 3.7e-12 74.3 54 55.6
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 3.7e-12 74.3 49 59.2
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 6.4e-12 73.6 57 52.6
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 1.4e-11 72.4 53 54.7
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.9e-11 72.0 69 49.3
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 2.4e-11 71.6 54 53.7
Nitab4.5_0012297g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 3.2e-11 71.2 45 66.7
CBR_g11002 Chara braunii HOM05D007120 ORTHO05D008881 4.1e-11 70.9 61 49.2
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.0e-10 68.6 62 50.0
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 2.7e-10 68.2 52 53.8
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 3.5e-10 67.8 62 50.0
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 4.6e-10 67.4 44 61.4
Sc11g0006040 Simmondsia chinensis HOM05D007120 ORTHO05D008881 4.6e-10 67.4 47 63.8
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 7.8e-10 66.6 58 53.4
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 7.8e-10 66.6 39 71.8
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 1.0e-09 66.2 55 50.9
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 1.3e-09 65.9 42 61.9
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 1.7e-09 65.5 57 49.1
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 1.7e-09 65.5 57 49.1
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 1.7e-09 65.5 57 49.1
Sed0014987 Sechium edule HOM05D007120 ORTHO05D008881 1.7e-09 65.5 61 45.9
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 2.3e-09 65.1 55 47.3
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 2.3e-09 65.1 55 47.3
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 2.3e-09 65.1 62 48.4
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 3.9e-09 64.3 55 47.3
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 3.9e-09 64.3 55 47.3
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 3.9e-09 64.3 71 45.1
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 1.1e-08 62.8 54 48.1
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 1.1e-08 62.8 46 60.9
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 1.5e-08 62.4 46 58.7
Sopen07g008940 Solanum pennellii HOM05D007120 ORTHO05D008881 1.5e-08 62.4 38 71.1
TAR633G1173 Trochodendron aralioides HOM05D009315 ORTHO05D008839 3.3e-08 61.2 37 70.3
Peaxi162Scf00184g00003 Petunia axillaris HOM05D007120 ORTHO05D008881 4.3e-08 60.8 39 61.5
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 5.6e-08 60.5 56 44.6
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 7.3e-08 60.1 55 47.3
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 9.5e-08 59.7 56 46.4
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 9.5e-08 59.7 56 46.4
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 9.5e-08 59.7 50 54.0
CiPaw.13G063000 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.6e-07 58.9 43 62.8
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 2.1e-07 58.5 46 52.2
COL.COLO4_19468 Corchorus olitorius HOM05D007120 ORTHO05D008881 3.6e-07 57.8 42 64.3
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 3.6e-07 57.8 50 50.0
EL10Ac2g02666 Beta vulgaris HOM05D007120 ORTHO05D008881 4.7e-07 57.4 43 55.8
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 4.7e-07 57.4 43 53.5
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 4.7e-07 57.4 43 53.5
CsaV3_6G002350 Cucumis sativus L. HOM05D007120 ORTHO05D008881 4.7e-07 57.4 43 62.8
Hund15797 Selenicereus undatus HOM05D007120 ORTHO05D008881 4.7e-07 57.4 40 60.0
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 6.2e-07 57.0 43 53.5
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 6.2e-07 57.0 43 53.5
CsaV3_5G011100 Cucumis sativus L. HOM05D007120 ORTHO05D008881 6.2e-07 57.0 52 48.1
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 8.1e-07 56.6 50 48.0
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 1.4e-06 55.8 40 55.0
DCAR_018042 Daucus carota HOM05D007120 ORTHO05D008881 1.4e-06 55.8 40 47.5
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 1.8e-06 55.5 43 51.2
AagrBONN_evm.TU.Sc2ySwM_344.712 Anthoceros agrestis HOM05D007120 ORTHO05D008881 2.3e-06 55.1 63 39.7
MELO3C020013.2 Cucumis melo HOM05D007120 ORTHO05D008881 4.0e-06 54.3 37 67.6
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 4.0e-06 54.3 55 41.8
HPP92_026799 Vanilla planifolia HOM05D007120 ORTHO05D008881 4.0e-06 54.3 61 41.0
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 5.2e-06 53.9 50 44.0
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 8.9e-06 53.1 44 52.3
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 8.9e-06 53.1 50 44.0
HPP92_000774 Vanilla planifolia HOM05D007120 ORTHO05D008881 8.9e-06 53.1 45 53.3


User provided reference genes

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