Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu006054.1 Olea europaea HOM05D003400 ORTHO05D003687 8.9e-182 640.2 333 100.0
Oeu063984.1 Olea europaea HOM05D003400 ORTHO05D003687 3.2e-70 269.6 333 52.9
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 3.1e-65 253.1 318 50.9
CAN.G24.15 Capsicum annuum HOM05D003400 ORTHO05D003687 5.4e-62 242.3 329 48.3
SalBow3G2848 Salvia bowleyana HOM05D003400 ORTHO05D003687 4.3e-59 232.6 317 48.3
Nitab4.5_0000171g0020 Nicotiana tabacum HOM05D003400 ORTHO05D003687 2.6e-56 223.4 313 47.9
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 3.4e-56 223.0 324 46.3
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 7.5e-56 221.9 324 46.3
Nitab4.5_0002745g0010 Nicotiana tabacum HOM05D003400 ORTHO05D003687 9.8e-56 221.5 313 47.3
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 6.4e-55 218.8 319 47.0
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 6.4e-55 218.8 323 45.5
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 8.3e-55 218.4 317 47.3
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 1.1e-54 218.0 324 45.7
TAR623G0519 Trochodendron aralioides HOM05D003400 ORTHO05D003687 1.9e-54 217.2 342 46.8
MSTRG.171 Avicennia marina HOM05D003400 ORTHO05D003687 5.4e-54 215.7 313 46.6
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 1.0e-52 211.5 291 48.5
Lj8C54T21 Lonicera japonica HOM05D003400 ORTHO05D003687 2.3e-52 210.3 308 44.8
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 5.1e-52 209.1 307 46.3
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 3.3e-51 206.5 303 47.5
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 9.5e-51 204.9 376 43.1
Lj1C967G2 Lonicera japonica HOM05D003400 ORTHO05D003687 1.6e-50 204.1 314 45.2
TAR633G0453 Trochodendron aralioides HOM05D003400 ORTHO05D003687 3.6e-50 203.0 335 43.3
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 8.1e-50 201.8 313 44.7
Actinidia13648 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.8e-49 200.7 304 46.4
MSTRG.8378 Avicennia marina HOM05D003400 ORTHO05D003687 2.6e-48 196.8 308 47.1
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.2e-47 193.7 326 42.6
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 2.2e-47 193.7 293 46.1
Migut.F00607 Erythranthe guttata HOM05D003400 ORTHO05D003687 6.4e-47 192.2 288 49.0
Haze_17357 Corylus avellana HOM05D003400 ORTHO05D003687 3.2e-46 189.9 314 43.3
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 2.7e-45 186.8 322 39.8
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 2.7e-45 186.8 304 44.7
Eucgr.J00113 Eucalyptus grandis HOM05D003400 ORTHO05D003687 3.5e-45 186.4 312 44.6
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 6.0e-45 185.7 319 40.4
CiPaw.01G306600 Carya illinoinensis HOM05D003400 ORTHO05D003687 7.8e-45 185.3 335 42.1
Manes.10G001400 Manihot esculenta HOM05D003400 ORTHO05D003687 1.3e-44 184.5 303 42.2
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 2.3e-44 183.7 345 40.0
SGA_v2.0_scaffold44G16620 Striga asiatica HOM05D003400 ORTHO05D003687 5.1e-44 182.6 321 43.0
Cpa.g.sc19.58 Carica papaya HOM05D003400 ORTHO05D003687 1.1e-43 181.4 350 38.9
Hund13449 Selenicereus undatus HOM05D003400 ORTHO05D003687 1.1e-43 181.4 336 40.2
Hma1.2p1_0292F.1_g115970 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 1.5e-43 181.0 254 48.8
EL10Ac3g07235 Beta vulgaris HOM05D003400 ORTHO05D003687 1.9e-43 180.6 292 44.5
vmacro06891 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 1.9e-43 180.6 295 44.1
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 2.5e-43 180.3 342 39.5
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 2.5e-43 180.3 338 41.7
QL08p064852 Quercus lobata HOM05D003400 ORTHO05D003687 3.3e-43 179.9 308 42.5
Dinv34484 Davidia involucrata HOM05D003400 ORTHO05D003687 1.2e-42 177.9 306 42.5
AUR62030610 Chenopodium quinoa HOM05D003400 ORTHO05D003687 1.6e-42 177.6 298 42.3
MD07G1233700 Malus domestica HOM05D003400 ORTHO05D003687 2.8e-42 176.8 318 39.6
AUR62024934 Chenopodium quinoa HOM05D003400 ORTHO05D003687 3.6e-42 176.4 295 43.4
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 4.7e-42 176.0 299 44.1
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 6.2e-42 175.6 306 40.8
Hund15817 Selenicereus undatus HOM05D003400 ORTHO05D003687 1.1e-41 174.9 291 44.3
Prupe.2G264100 Prunus persica HOM05D003400 ORTHO05D003687 4.0e-41 172.9 324 39.5
Gohir.D05G280400 Gossypium hirsutum HOM05D003400 ORTHO05D003687 6.8e-41 172.2 286 43.4
Duzib114G0186 Durio zibethinus HOM05D003400 ORTHO05D003687 1.2e-40 171.4 352 38.9
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.2e-40 171.4 311 41.5
Rhsim03G0152100 Rhododendron simsii HOM05D003400 ORTHO05D003687 1.2e-40 171.4 299 43.1
Gohir.D04G012500 Gossypium hirsutum HOM05D003400 ORTHO05D003687 2.6e-40 170.2 330 40.9
Ciclev10030981m.g Citrus clementina HOM05D003400 ORTHO05D003687 4.4e-40 169.5 336 38.4
Lalb_Chr24g0402681 Lupinus albus HOM05D003400 ORTHO05D003687 7.6e-40 168.7 334 38.9
PSO017G2438 Papaver somniferum HOM05D003400 ORTHO05D003687 9.9e-40 168.3 315 36.5
ECA232G0413 Erigeron canadensis HOM05D003400 ORTHO05D003687 1.3e-39 167.9 327 40.1
Gorai.012G014800 Gossypium raimondii HOM05D003400 ORTHO05D003687 1.3e-39 167.9 336 40.8
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 1.3e-39 167.9 319 39.2
MD01G1167700 Malus domestica HOM05D003400 ORTHO05D003687 1.7e-39 167.5 324 38.6
Gorai.009G293800 Gossypium raimondii HOM05D003400 ORTHO05D003687 2.9e-39 166.8 345 38.6
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 2.9e-39 166.8 319 39.8
TAR636G0727 Trochodendron aralioides HOM05D003400 ORTHO05D003687 2.9e-39 166.8 310 41.0
EL10Ac2g02645 Beta vulgaris HOM05D003400 ORTHO05D003687 4.2e-38 162.9 295 41.0
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 4.2e-38 162.9 273 40.7
HanXRQChr08g0221571 Helianthus annuus HOM05D003400 ORTHO05D003687 4.2e-38 162.9 274 42.0
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 5.4e-38 162.5 200 45.0
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 1.6e-37 161.0 278 40.3
Manes.07G141701 Manihot esculenta HOM05D003400 ORTHO05D003687 4.6e-37 159.5 328 38.4
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 4.6e-37 159.5 348 35.1
CANSAT21G0473 Cannabis sativa HOM05D003400 ORTHO05D003687 6.0e-37 159.1 273 42.5
Manes.07G143400 Manihot esculenta HOM05D003400 ORTHO05D003687 6.0e-37 159.1 331 37.5
Lalb_Chr22g0360931 Lupinus albus HOM05D003400 ORTHO05D003687 7.8e-37 158.7 332 38.3
CANSAT21G1871 Cannabis sativa HOM05D003400 ORTHO05D003687 1.0e-36 158.3 272 44.1
PSO170G4360 Papaver somniferum HOM05D003400 ORTHO05D003687 1.3e-36 157.9 301 36.9
PGR044G0713 Punica granatum HOM05D003400 ORTHO05D003687 1.3e-36 157.9 322 40.1
Sc14g0005640 Simmondsia chinensis HOM05D003400 ORTHO05D003687 1.3e-36 157.9 300 40.0
TWI53G0017 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 1.3e-36 157.9 297 40.4
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 1.7e-36 157.5 355 36.6
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 3.9e-36 156.4 352 35.2
Lsat_1_v5_gn_9_60041 Lactuca sativa HOM05D003400 ORTHO05D003687 3.9e-36 156.4 294 40.5
Duzib106G2049 Durio zibethinus HOM05D003400 ORTHO05D003687 6.6e-36 155.6 320 39.1
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 6.6e-36 155.6 353 34.6
arahy.Tifrunner.gnm1.ann1.45IBUQ Arachis hypogaea HOM05D003400 ORTHO05D003687 8.7e-36 155.2 287 38.3
arahy.Tifrunner.gnm1.ann1.JMN63H Arachis hypogaea HOM05D003400 ORTHO05D003687 1.1e-35 154.8 287 38.3
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 1.1e-35 154.8 355 34.1
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.1e-35 154.8 355 34.1
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 7.3e-35 152.1 352 35.2
MBI15_g01598_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 1.6e-34 151.0 256 41.8
Lj1g0015659 Lotus japonicus HOM05D003400 ORTHO05D003687 6.2e-34 149.1 310 38.1
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 1.1e-33 148.3 322 34.2
TWI09G1099 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 1.1e-33 148.3 300 41.0
VMungo0647G2516 Vigna mungo HOM05D003400 ORTHO05D003687 1.4e-33 147.9 299 38.1
Ca_03351_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 3.1e-33 146.7 316 35.1
Phvul.001G062900 Phaseolus vulgaris HOM05D003400 ORTHO05D003687 4.0e-33 146.4 281 40.2
DCAR_018037 Daucus carota HOM05D003400 ORTHO05D003687 5.3e-33 146.0 299 36.5
FAN10G0615 Fragaria x ananassa HOM05D003400 ORTHO05D003687 6.9e-33 145.6 351 33.3
ECA233G0468 Erigeron canadensis HOM05D003400 ORTHO05D003687 9.0e-33 145.2 325 36.0
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 1.2e-32 144.8 348 34.2
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 2.0e-32 144.1 274 39.4
Psat6g036400 Pisum sativum HOM05D003400 ORTHO05D003687 4.4e-32 142.9 298 37.9
Migut.F01244 Erythranthe guttata HOM05D003400 ORTHO05D003687 1.9e-30 137.5 231 45.5
Glyma.17G191500 Glycine max HOM05D003400 ORTHO05D003687 3.2e-30 136.7 314 37.3
DCAR_020152 Daucus carota HOM05D003400 ORTHO05D003687 5.4e-30 136.0 168 46.4
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 1.2e-29 134.8 304 35.5
Ca_12768_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 1.6e-29 134.4 263 34.2
Lsat_1_v5_gn_8_11440 Lactuca sativa HOM05D003400 ORTHO05D003687 1.6e-29 134.4 248 40.3
Glyma.14G117500 Glycine max HOM05D003400 ORTHO05D003687 2.1e-29 134.0 291 38.1
Actinidia01000 Actinidia chinensis HOM05D003400 ORTHO05D003687 3.5e-29 133.3 148 48.0
Medtr1g007460 Medicago truncatula HOM05D003400 ORTHO05D003687 3.5e-29 133.3 286 35.3
Potri.013G091100 Populus trichocarpa HOM05D003400 ORTHO05D003687 1.7e-28 131.0 183 43.2
HPP92_024977 Vanilla planifolia HOM05D003400 ORTHO05D003687 1.7e-28 131.0 262 37.4
PSO339G6613 Papaver somniferum HOM05D003400 ORTHO05D003687 6.6e-28 129.0 328 33.2
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 1.5e-27 127.9 306 34.6
PSO384G0897 Papaver somniferum HOM05D003400 ORTHO05D003687 1.5e-27 127.9 315 33.0
Sed0014609 Sechium edule HOM05D003400 ORTHO05D003687 2.5e-27 127.1 293 37.5
Gohir.A05G278600 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.4e-25 121.3 237 43.0
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 1.5e-24 117.9 331 33.2
AL6G15080 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 7.6e-24 115.5 183 41.0
ATR1127G045 Amborella trichopoda HOM05D003400 ORTHO05D003687 2.9e-23 113.6 136 46.3
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 3.8e-23 113.2 300 36.3
Zm00001eb231310 Zea mays HOM05D003400 ORTHO05D003687 1.4e-22 111.3 290 33.1
CARHR207990 Cardamine hirsuta HOM05D003400 ORTHO05D003687 4.2e-22 109.8 295 33.6
BcaB05g21725 Brassica carinata HOM05D003400 ORTHO05D003687 5.4e-22 109.4 154 42.9
Carub.0006s0417 Capsella rubella HOM05D003400 ORTHO05D003687 5.4e-22 109.4 195 39.0
Thhalv10013224m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 5.4e-22 109.4 288 33.7
BolC2t06192H Brassica oleracea HOM05D003400 ORTHO05D003687 9.3e-22 108.6 126 48.4
C09p71460 Brassica napus HOM05D003400 ORTHO05D003687 2.1e-21 107.5 122 49.2
BcaC03g13153 Brassica carinata HOM05D003400 ORTHO05D003687 2.7e-21 107.1 174 40.2
A10p30950 Brassica napus HOM05D003400 ORTHO05D003687 6.0e-21 105.9 123 48.8
BolC9t59909H Brassica oleracea HOM05D003400 ORTHO05D003687 6.0e-21 105.9 122 48.4
BraA02t04839Z Brassica rapa HOM05D003400 ORTHO05D003687 6.0e-21 105.9 125 46.4
BraA10t45140Z Brassica rapa HOM05D003400 ORTHO05D003687 6.0e-21 105.9 123 48.8
BcaC06g32234 Brassica carinata HOM05D003400 ORTHO05D003687 1.8e-20 104.4 121 47.9
CiPaw.13G063500 Carya illinoinensis HOM05D003400 ORTHO05D003687 1.8e-20 104.4 254 36.6
C02p02230 Brassica napus HOM05D003400 ORTHO05D003687 2.3e-20 104.0 174 41.4
AT5G05240 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 1.5e-19 101.3 297 33.7
Sp6g37590 Schrenkiella parvula HOM05D003400 ORTHO05D003687 3.3e-19 100.1 297 33.0
Aa31LG11G6090 Aethionema arabicum HOM05D003400 ORTHO05D003687 4.8e-18 96.3 265 34.7
AT2G40630 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 3.1e-17 93.6 119 46.2
Aa31LG3G1490 Aethionema arabicum HOM05D003400 ORTHO05D003687 1.5e-16 91.3 317 30.0
BcaC06g32233 Brassica carinata HOM05D003400 ORTHO05D003687 1.5e-16 91.3 110 47.3
Carub.0004s2292 Capsella rubella HOM05D003400 ORTHO05D003687 3.4e-16 90.1 213 33.3
Sp4g22960 Schrenkiella parvula HOM05D003400 ORTHO05D003687 3.4e-16 90.1 117 46.2
Aqoxy2G00693 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 1.0e-15 88.6 112 45.5
BraA03t11508Z Brassica rapa HOM05D003400 ORTHO05D003687 2.9e-15 87.0 122 45.1
unitig_46.g18748 Utricularia gibba HOM05D003400 ORTHO05D003687 4.9e-15 86.3 129 40.3
AL4G38500 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 8.4e-15 85.5 182 35.7
A03p22840 Brassica napus HOM05D003400 ORTHO05D003687 1.1e-14 85.1 179 37.4
C03p27090 Brassica napus HOM05D003400 ORTHO05D003687 1.1e-14 85.1 179 37.4
BcaC01g05391 Brassica carinata HOM05D003400 ORTHO05D003687 2.5e-14 84.0 179 36.9
Thhalv10016481m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 4.6e-13 79.7 231 29.0
unitig_37.g12474 Utricularia gibba HOM05D003400 ORTHO05D003687 6.0e-13 79.3 203 33.5
Haze_24472 Corylus avellana HOM05D003400 ORTHO05D003687 2.3e-12 77.4 226 35.4
BcaC02g07326 Brassica carinata HOM05D003400 ORTHO05D003687 3.0e-12 77.0 178 28.7
QL01p024561 Quercus lobata HOM05D003400 ORTHO05D003687 5.1e-12 76.3 258 32.6
BolC4t28345H Brassica oleracea HOM05D003400 ORTHO05D003687 1.9e-11 74.3 138 31.9
A04p31060 Brassica napus HOM05D003400 ORTHO05D003687 4.3e-11 73.2 99 37.4
MSTRG.20929 Avicennia marina HOM05D003400 ORTHO05D003687 2.8e-10 70.5 82 45.1
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 2.8e-10 70.5 103 44.7
THA.LOC104813796 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 4.1e-09 66.6 93 44.1
BcaB01g03526 Brassica carinata HOM05D003400 ORTHO05D003687 5.3e-09 66.2 113 39.8
BraA04t18562Z Brassica rapa HOM05D003400 ORTHO05D003687 6.9e-09 65.9 90 37.8
BcaB06g29158 Brassica carinata HOM05D003400 ORTHO05D003687 1.4e-06 58.2 221 27.1


User provided reference genes

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