Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 0.0e+00 1116.3 623 100.0
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 3.3e-121 439.9 386 62.7
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 1.1e-113 414.8 386 60.6
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 4.3e-113 412.9 387 56.8
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 6.9e-111 405.6 386 57.3
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 4.5e-110 402.9 387 58.9
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 9.9e-110 401.7 392 55.9
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 1.4e-108 397.9 387 56.6
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.2e-108 396.4 387 56.6
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 7.1e-108 395.6 386 56.2
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 2.1e-107 394.0 386 54.7
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.1e-107 394.0 386 53.9
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 2.7e-107 393.7 386 53.6
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 6.0e-107 392.5 387 55.6
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 7.9e-107 392.1 384 56.0
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 7.9e-107 392.1 386 53.6
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 3.9e-106 389.8 386 57.3
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 6.7e-106 389.0 387 55.0
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 6.7e-106 389.0 393 56.2
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 8.7e-106 388.7 386 56.0
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 7.4e-105 385.6 386 53.1
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 2.1e-104 384.0 386 54.4
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 2.8e-104 383.6 385 54.8
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 3.7e-104 383.3 386 56.5
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 1.1e-103 381.7 393 54.5
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 2.0e-102 377.5 392 52.3
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 2.0e-102 377.5 388 54.9
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 7.6e-102 375.6 385 51.2
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 2.2e-101 374.0 386 56.2
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 4.9e-101 372.9 386 56.2
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.1e-100 371.7 388 54.4
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.4e-100 371.3 386 51.8
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 3.2e-100 370.2 386 52.6
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 4.2e-100 369.8 388 52.6
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 4.2e-100 369.8 386 53.6
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.2e-99 368.2 387 53.7
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.2e-99 368.2 386 53.9
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.6e-99 367.9 386 54.4
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 3.5e-99 366.7 383 53.5
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 4.6e-99 366.3 387 53.0
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.0e-98 365.2 386 51.6
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 1.3e-98 364.8 413 51.6
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 3.0e-98 363.6 383 53.8
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 3.9e-98 363.2 390 51.5
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 8.7e-98 362.1 392 52.3
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.1e-97 361.7 388 52.3
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 3.3e-97 360.1 385 51.9
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 4.3e-97 359.8 386 54.9
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 1.6e-96 357.8 387 50.6
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.8e-96 356.3 392 53.6
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 8.2e-96 355.5 386 53.6
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.2e-96 355.5 386 53.6
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.1e-95 353.6 392 54.1
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.2e-94 351.7 386 53.1
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 1.5e-94 351.3 344 54.7
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 3.4e-94 350.1 385 55.8
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 4.5e-94 349.7 326 58.6
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 5.9e-94 349.4 394 50.5
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 7.6e-94 349.0 425 50.1
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.3e-93 348.2 385 48.8
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.7e-93 347.8 390 55.6
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.7e-93 347.8 390 53.1
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 2.2e-93 347.4 392 52.6
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 2.2e-93 347.4 391 54.7
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.9e-93 347.1 392 54.6
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 8.5e-93 345.5 393 51.9
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.9e-92 344.4 382 49.7
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 9.3e-92 342.0 389 55.0
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 2.1e-91 340.9 386 52.1
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.3e-90 338.2 386 52.8
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 6.7e-90 335.9 392 53.8
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 4.3e-89 333.2 384 46.6
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 5.7e-89 332.8 328 55.5
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.7e-89 332.8 384 46.6
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 5.7e-89 332.8 397 50.6
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 6.3e-88 329.3 384 46.6
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 6.3e-88 329.3 395 48.1
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.8e-87 327.8 390 50.5
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.8e-87 327.8 404 45.8
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 4.1e-87 326.6 395 46.3
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 9.1e-87 325.5 384 46.6
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.7e-85 321.2 397 46.1
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.7e-85 321.2 385 51.2
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 1.4e-84 318.2 401 50.1
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 3.2e-84 317.0 392 47.2
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 4.6e-83 313.2 308 56.5
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.4e-82 311.6 393 46.6
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 2.3e-82 310.8 389 46.5
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 3.9e-82 310.1 388 46.1
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 2.6e-81 307.4 386 49.7
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 5.7e-81 306.2 386 43.5
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.3e-80 305.1 390 45.4
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 2.2e-80 304.3 330 50.9
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 3.7e-80 303.5 390 46.4
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 4.8e-80 303.1 390 48.2
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.1e-79 302.0 388 47.2
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 3.1e-79 300.4 395 45.1
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 1.2e-78 298.5 401 45.1
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 1.2e-78 298.5 401 45.1
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 1.2e-78 298.5 401 45.1
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 2.6e-78 297.4 388 48.2
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 7.7e-78 295.8 385 45.2
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.3e-77 295.0 404 43.1
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.0e-77 293.1 404 43.3
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 6.5e-77 292.7 386 46.1
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.1e-76 292.0 404 43.1
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.4e-76 291.6 385 44.7
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 3.2e-76 290.4 432 44.0
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 3.2e-76 290.4 388 46.6
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 3.2e-76 290.4 388 49.5
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.2e-75 288.5 388 44.6
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.4e-74 285.0 370 44.1
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.8e-74 284.6 401 43.6
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.8e-74 284.6 401 43.6
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.1e-73 282.0 384 43.5
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 2.0e-73 281.2 327 50.2
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 9.7e-73 278.9 388 43.3
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 9.7e-73 278.9 399 43.1
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.3e-72 278.5 385 43.1
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 6.3e-72 276.2 393 42.7
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 6.3e-72 276.2 393 45.8
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 2.4e-71 274.2 385 43.9
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 5.3e-71 273.1 387 42.6
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 5.3e-71 273.1 379 47.5
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 2.6e-70 270.8 394 45.9
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 2.2e-69 267.7 394 45.4
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.9e-69 267.3 341 46.9
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 9.4e-68 262.3 304 48.7
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 1.6e-67 261.5 423 43.5
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 3.6e-67 260.4 390 43.1
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 1.0e-66 258.8 273 52.4
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 1.7e-64 251.5 296 49.3
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 2.8e-64 250.8 389 42.7
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 3.1e-63 247.3 386 40.7
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 2.5e-60 237.7 348 42.2
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 1.4e-58 231.9 168 67.3
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 9.8e-57 225.7 342 43.3
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.8e-56 224.2 372 41.9
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 1.4e-55 221.9 159 67.3
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.2e-54 218.8 154 68.8
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 1.5e-52 211.8 314 43.0
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.6e-51 207.2 270 50.0
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.0e-45 189.1 341 37.8
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 1.9e-44 184.9 292 40.8
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.3e-44 183.7 266 47.7
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 3.6e-43 180.6 352 35.8
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.0e-43 179.5 266 46.2
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.5e-41 175.3 266 42.9
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.5e-41 175.3 150 55.3
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 7.5e-41 172.9 171 56.1
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.7e-37 161.8 222 44.6
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 2.3e-37 161.4 302 34.8
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.6e-36 156.8 121 59.5
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 4.7e-35 153.7 126 58.7
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 8.9e-34 149.4 341 32.8
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.4e-33 147.5 147 55.1
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 8.3e-32 142.9 134 57.5
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.0e-29 136.0 125 51.2
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.3e-26 124.8 262 37.4
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 5.2e-26 123.6 270 33.7
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 2.4e-23 114.8 98 59.2
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 9.2e-23 112.8 201 36.3
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 1.6e-22 112.1 92 59.8
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.3e-16 92.4 90 51.1
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.1e-14 85.1 52 78.8
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 3.5e-14 84.3 59 66.1
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 4.3e-12 77.4 136 38.2
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 9.6e-12 76.3 138 37.7
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 4.6e-06 57.4 35 77.1
Cfa020208 Carpinus fangiana HOM05D005871 ORTHO05D003654 6.0e-06 57.0 33 87.9
Manes.15G061300 Manihot esculenta HOM05D005871 ORTHO05D003654 6.0e-06 57.0 52 63.5
Phvul.006G056300 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 6.0e-06 57.0 142 36.6
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 7.8e-06 56.6 161 32.3


User provided reference genes

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