Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 0.0e+00 1349.3 701 100.0
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 1.1e-279 966.5 707 71.1
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 1.4e-274 949.5 706 70.8
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.1e-269 933.3 699 70.2
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 2.2e-267 925.6 709 69.5
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 6.1e-265 917.5 705 68.5
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 7.4e-263 910.6 705 68.1
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 8.2e-262 907.1 720 67.5
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.0e-259 900.2 705 66.8
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 3.8e-259 898.3 702 67.1
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 1.2e-257 893.3 705 66.7
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 1.6e-257 892.9 700 68.0
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 2.7e-257 892.1 704 67.9
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 2.7e-257 892.1 700 67.9
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 8.8e-256 887.1 695 67.2
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 4.4e-255 884.8 704 66.6
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 7.4e-255 884.0 726 65.3
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 8.2e-254 880.6 733 65.9
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 1.8e-253 879.4 704 65.9
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 2.9e-251 872.1 703 65.7
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 3.8e-251 871.7 741 64.1
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 6.5e-251 870.9 681 67.3
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 1.4e-250 869.8 720 65.7
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 2.5e-250 869.0 702 64.2
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.3e-246 856.7 747 63.1
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 1.7e-246 856.3 699 66.1
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 6.3e-246 854.4 705 65.5
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 1.3e-243 846.7 707 62.7
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 9.4e-242 840.5 653 68.5
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 2.7e-241 839.0 705 63.3
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 4.7e-241 838.2 705 63.5
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 1.0e-240 837.0 709 64.5
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.8e-240 836.3 705 63.5
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 1.2e-239 833.6 712 62.9
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 4.4e-239 831.6 704 62.2
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 8.3e-238 827.4 699 62.9
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 1.7e-235 819.7 696 63.4
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 4.2e-234 815.1 693 63.2
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 2.1e-233 812.8 704 62.9
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 1.8e-232 809.7 699 62.4
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 3.0e-232 808.9 711 61.9
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 7.5e-231 804.3 705 62.3
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 2.2e-230 802.7 707 60.0
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 3.7e-230 802.0 698 61.7
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 7.0e-229 797.7 707 61.7
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 2.7e-228 795.8 693 61.2
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 1.1e-226 790.4 694 61.4
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 1.1e-226 790.4 699 61.4
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 3.3e-226 788.9 697 61.3
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 5.5e-226 788.1 704 61.6
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 7.2e-226 787.7 621 66.7
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 8.0e-225 784.3 704 61.6
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 1.4e-224 783.5 705 60.6
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 1.4e-224 783.5 699 61.1
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 3.0e-224 782.3 708 60.0
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 3.7e-222 775.4 703 60.5
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 1.4e-221 773.5 685 60.9
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 1.6e-220 770.0 703 59.0
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 3.3e-218 762.3 704 59.8
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 4.3e-218 761.9 703 58.0
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 5.6e-218 761.5 701 58.1
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 1.6e-217 760.0 701 59.2
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 2.1e-217 759.6 693 61.2
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 4.6e-212 741.9 643 62.5
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 2.8e-209 732.6 507 73.4
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 3.6e-209 732.3 608 63.8
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 2.2e-206 723.0 706 56.2
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 1.2e-204 717.2 617 61.4
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 5.1e-203 711.8 706 55.7
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 3.6e-201 705.7 707 55.9
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 3.6e-201 705.7 707 55.7
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 1.1e-200 704.1 712 56.9
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 1.4e-200 703.7 709 55.1
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.8e-200 703.4 707 55.7
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 2.3e-200 703.0 709 55.7
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 6.8e-200 701.4 706 55.2
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 1.4e-197 693.7 707 54.7
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 1.9e-194 683.3 626 59.1
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 3.3e-194 682.6 707 55.3
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 4.3e-194 682.2 705 54.2
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 1.4e-192 677.2 703 55.0
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 1.8e-192 676.8 520 66.9
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 4.2e-189 665.6 698 54.0
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 4.2e-189 665.6 692 55.3
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 7.1e-189 664.8 688 54.9
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 3.3e-186 656.0 704 53.1
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 1.2e-180 637.5 714 50.8
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 6.0e-180 635.2 604 58.4
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 7.6e-175 618.2 729 50.9
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 2.2e-174 616.7 696 50.0
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 2.4e-173 613.2 667 51.9
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 1.0e-171 607.8 700 48.9
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 2.4e-160 570.1 598 55.4
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 1.9e-154 550.4 712 47.1
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 4.1e-152 542.7 643 51.2
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 6.5e-142 508.8 735 44.8
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.9e-131 473.0 300 74.3
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 1.9e-125 454.1 507 49.5
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 2.7e-119 433.7 729 41.7
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 1.7e-118 431.0 279 74.6
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 1.0e-107 395.2 378 54.5
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 9.6e-69 265.8 310 53.2
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 1.3e-62 245.4 239 55.6
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 6.9e-43 179.9 103 83.5
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.7e-41 175.3 103 81.6
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.6e-39 168.7 122 68.9
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 6.1e-39 166.8 99 79.8
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 1.5e-34 152.1 478 31.4
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.2e-32 143.3 102 69.6
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 7.9e-31 139.8 102 69.6
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 4.5e-18 97.4 198 40.9
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.3e-14 85.1 47 83.0
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 5.7e-13 80.5 183 32.2
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.3e-12 79.3 62 62.9
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 7.7e-10 70.1 613 22.5
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.5e-08 65.1 51 60.8


User provided reference genes

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